Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000751

Physical Location & Seq

Genomic Coordinates Forward (+)

36959109 .. 36959843

Gene Structure 735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG207000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCTCGCTTTGGGGTGGAAGGAGATCACCATGGAACAACTACACCAAGAATGTTTGAGTGGACGTTGGAGCACCACAAACAGCTCGTGAATACCTTCATCTTCTTGGGCGGTGATAAAGAAAAAGTTGGAGTAGACAATGCCTTGAAGGCGGAGCTGTTGAGCCTGGCGGGGTGTTGTTGTAGAAGCTTTTACCTTGACTTCCACATTTCCTTGCTTGGGGTACTACAGAAAAGGTCCGAAGCATTATTTTCCTCTAACAAAGTCACCCTTGAAAGCCTATACGTGGCACCTAAAAAGATGTCATCGCCATGGACGCTGGAGCATCACCGGCGGGTCGTGGAGGCGGTGATACAACTAGGTGGGCTTAGCAATAGCAAGACTACCCCAAAGGCCGTGCTGAAGTTAATGGATGAGGAGGACCGCTGCCAAGGTCTCACCACAAAGATGATAGCACACCACCTTCTAGGGTTGTATCATTTGCAAAAGGAAACTCAGCGGCTAATGGCTTTTGGAATGGCCGGTGGTGAAGAAGAAAGTGAGCTATCGCTTAGGGAGCTCCAGTACCTTGTTTTTAAAGGGTTGCCCCTACAACGAAATAACGTTCTATACACAAATGTAAAAGATCCTCTACTCCGACAGCACCTGGGGCTCCTCAAACAAGTTAATATGGCACACCGAATAAGATTGCACATTATTAAGTCTGAGAGGGAAGTATTAAGAGCTTTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007275 GO:0007623 GO:0008150 GO:0009267 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048511 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055063 GO:0055081 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071496 GO:0072505 GO:0080090 GO:0098771 GO:0104004 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

244

Amino Acids

27.84

Weight (kDa)

9.14

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13881 FvH4_7g21401 FvH4_7g21460 FvH4_7g21461
prunus_persica	Prupe.2G229300_v2.0.a1 Prupe.2G229300_v2.0.a1
rosa_laevigata	RLG00000004659 RLG00000008621 RLG00000013452 RLG00000013453 RLG00000013454 RLG00000023300 RLG00000027397 RLG00000027398 RLG00000027399
rosa_multiflora	Rmu_co8024742.1_g000001 Rmu_sc0000058.1_g000004 Rmu_sc0000271.1_g000010 Rmu_sc0002093.1_g000035 Rmu_sc0003642.1_g000002 Rmu_sc0004311.1_g000014 Rmu_sc0004311.1_g000015 Rmu_sc0004311.1_g000016 Rmu_sc0004790.1_g000005 Rmu_sc0010532.1_g000005 Rmu_sc0018344.1_g000004 Rmu_sc0034955.1_g000002 Rmu_sc0034955.1_g000003
rosa_roxburghii	Rroxscaffold_3G00230670 Rroxscaffold_3G00266020 Rroxscaffold_4G00290880 Rroxscaffold_4G00290890 Rroxscaffold_4G00290900 Rroxscaffold_6G00398590 Rroxscaffold_7G00193140 Rroxscaffold_7G00193160
rosa_rugosa	Rorug01G0324200 Rorug01G0324300 Rorug01G0324300 Rorug03G0204900 Rorug05G0541000 Rorug06G0094500 Rorug06G0094600 Rorug06G0494100 Rorug07G0256300
rosa_samantha	Rh1AG332900 Rh1AG333000 Rh1AG333100 Rh1BG293800 Rh1BG293900 Rh1BG294000 Rh1CG310700 Rh1DG326200 Rh1DG326300 Rh1DG326400 Rh3AG253000 Rh3BG289700 Rh3CG287000 Rh3DG282600 Rh6AG206700 Rh6AG206800 Rh6AG207000 Rh6BG209700 Rh6CG212400 Rh6DG202800 Rh7AG098700 Rh7BG100400 Rh7BG386400 Rh7CG101900 Rh7DG100500
rosa_wichuraiana	Rw1G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	289
AccI	GTMKAC	1 cut(s)	135
AciI	CCGC	7 cut(s)	111, 152, 170, 334, 347, 424, 499
AclI	AACGTT	1 cut(s)	603
AclWI	GGATC	1 cut(s)	620
AcoI	YGGCCR	1 cut(s)	519
AcuI	CTGAAG	1 cut(s)	422
AfaI	GTAC	2 cut(s)	225, 566
AfiI	CCNNNNNNNGG	2 cut(s)	219, 286
AgsI	TTSAA	3 cut(s)	148, 275, 731
AjnI	CCWGG	2 cut(s)	165, 645
AluBI	AGCT	6 cut(s)	85, 157, 189, 544, 559, 725
AluI	AGCT	6 cut(s)	85, 157, 189, 544, 559, 725
Alw21I	GWGCWC	2 cut(s)	75, 561
Alw26I	GTCTC	2 cut(s)	9, 440
AlwI	GGATC	1 cut(s)	620
AlwNI	CAGNNNCTG	1 cut(s)	646
AoxI	GGCC	2 cut(s)	393, 519
ApeKI	GCWGC	1 cut(s)	426
Asp700I	GAANNNNTTC	1 cut(s)	95
AspS9I	GGNCC	2 cut(s)	237, 421
AsuHPI	GGTGA	7 cut(s)	20, 125, 259, 320, 361, 430, 539
AvaII	GGWCC	2 cut(s)	237, 421
BanI	GGYRCC	1 cut(s)	289
BanII	GRGCYC	2 cut(s)	561, 654
BauI	CACGAG	1 cut(s)	86
Bbv12I	GWGCWC	2 cut(s)	75, 561
BbvI	GCAGC	1 cut(s)	413
BceAI	ACGGC	1 cut(s)	380
BciT130I	CCWGG	2 cut(s)	167, 647
BcoDI	GTCTC	2 cut(s)	9, 440
BfaI	CTAG	2 cut(s)	359, 467
BfmI	CTRYAG	1 cut(s)	227
BglI	GCCNNNNNGGC	1 cut(s)	149
BisI	GCNGC	2 cut(s)	427, 500
BlpI	GCTNAGC	1 cut(s)	368
BlsI	GCNGC	2 cut(s)	428, 501
Bme1390I	CCNGG	2 cut(s)	167, 647
Bme18I	GGWCC	2 cut(s)	237, 421
BmgT120I	GGNCC	2 cut(s)	237, 421
BmiI	GGNNCC	2 cut(s)	291, 653
BmrFI	CCNGG	2 cut(s)	167, 647
BmsI	GCATC	1 cut(s)	334
BpmI	CTGGAG	2 cut(s)	341, 545
Bpu10I	CCTNAGC	1 cut(s)	551
Bpu1102I	GCTNAGC	1 cut(s)	368
BsaAI	YACGTR	1 cut(s)	286
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	4 cut(s)	31, 311, 430, 646
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 286
Bse118I	RCCGGY	2 cut(s)	330, 521
Bse1I	ACTGG	1 cut(s)	562
BseBI	CCWGG	2 cut(s)	167, 647
BseDI	CCNNGG	4 cut(s)	31, 311, 430, 646
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	2 cut(s)	219, 286
BseMII	CTCAG	2 cut(s)	509, 696
BseNI	ACTGG	1 cut(s)	562
BseRI	GAGGAG	2 cut(s)	431, 644
BseXI	GCAGC	1 cut(s)	413
BshFI	GGCC	2 cut(s)	395, 521
BshNI	GGYRCC	1 cut(s)	289
BsiHKAI	GWGCWC	2 cut(s)	75, 561
BsiSI	CCGG	2 cut(s)	331, 522
BslI	CCNNNNNNNGG	2 cut(s)	219, 286
BsmAI	GTCTC	2 cut(s)	9, 440
BsnI	GGCC	2 cut(s)	395, 521
Bso31I	GGTCTC	1 cut(s)	440
Bsp1286I	GDGCHC	3 cut(s)	75, 561, 654
Bsp143I	GATC	2 cut(s)	25, 625
Bsp1720I	GCTNAGC	1 cut(s)	368
Bsp19I	CCATGG	2 cut(s)	31, 311
BspACI	CCGC	7 cut(s)	111, 152, 170, 334, 347, 424, 499
BspANI	GGCC	2 cut(s)	395, 521
BspCNI	CTCAG	2 cut(s)	508, 697
BspLI	GGNNCC	2 cut(s)	291, 653
BspPI	GGATC	1 cut(s)	620
BspT107I	GGYRCC	1 cut(s)	289
BspTNI	GGTCTC	1 cut(s)	440
BsrFI	RCCGGY	2 cut(s)	330, 521
BsrI	ACTGG	1 cut(s)	562
BssAI	RCCGGY	2 cut(s)	330, 521
BssECI	CCNNGG	4 cut(s)	31, 311, 430, 646
BssMI	GATC	2 cut(s)	25, 625
BssSI	CACGAG	1 cut(s)	86
BssT1I	CCWWGG	3 cut(s)	31, 311, 430
Bst2BI	CACGAG	1 cut(s)	86
Bst2UI	CCWGG	2 cut(s)	167, 647
BstBAI	YACGTR	1 cut(s)	286
BstDEI	CTNAG	4 cut(s)	368, 495, 551, 705
BstDSI	CCRYGG	2 cut(s)	31, 311
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	2 cut(s)	28, 628
BstMAI	GTCTC	2 cut(s)	9, 440
BstMBI	GATC	2 cut(s)	25, 625
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 316, 331, 556, 649
BstNI	CCWGG	2 cut(s)	167, 647
BstSCI	CCNGG	2 cut(s)	165, 645
BstSFI	CTRYAG	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	413
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BsuRI	GGCC	2 cut(s)	395, 521
BtgI	CCRYGG	2 cut(s)	31, 311
BtgZI	GCGATG	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	418
CaiI	CAGNNNCTG	1 cut(s)	646
Cfr10I	RCCGGY	2 cut(s)	330, 521
Cfr13I	GGNCC	2 cut(s)	237, 421
CseI	GACGC	1 cut(s)	325
Csp6I	GTAC	2 cut(s)	224, 565
CviAII	CATG	2 cut(s)	32, 312
CviQI	GTAC	2 cut(s)	224, 565
DdeI	CTNAG	4 cut(s)	368, 495, 551, 705
DpnI	GATC	2 cut(s)	27, 627
DpnII	GATC	2 cut(s)	25, 625
DraI	TTTAAA	1 cut(s)	577
EaeI	YGGCCR	1 cut(s)	519
EciI	GGCGGA	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	559
Eco130I	CCWWGG	3 cut(s)	31, 311, 430
Eco24I	GRGCYC	2 cut(s)	561, 654
Eco31I	GGTCTC	1 cut(s)	440
Eco47I	GGWCC	2 cut(s)	237, 421
Eco53kI	GAGCTC	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	559
EcoRII	CCWGG	2 cut(s)	165, 645
EcoT14I	CCWWGG	3 cut(s)	31, 311, 430
EcoT38I	GRGCYC	2 cut(s)	561, 654
ErhI	CCWWGG	3 cut(s)	31, 311, 430
FaeI	CATG	2 cut(s)	35, 315
FaiI	YATR	5 cut(s)	33, 283, 313, 610, 671
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FatI	CATG	2 cut(s)	31, 311
FauI	CCCGC	2 cut(s)	163, 327
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	427, 500
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	2 cut(s)	561, 654
Fsp4HI	GCNGC	2 cut(s)	427, 500
FspBI	CTAG	2 cut(s)	359, 467
GluI	GCNGC	2 cut(s)	427, 500
GsuI	CTGGAG	2 cut(s)	341, 545
HaeIII	GGCC	2 cut(s)	395, 521
HapII	CCGG	2 cut(s)	331, 522
HgaI	GACGC	1 cut(s)	325
Hin1II	CATG	2 cut(s)	35, 315
HindIII	AAGCTT	1 cut(s)	187
HpaII	CCGG	2 cut(s)	331, 522
HphI	GGTGA	7 cut(s)	20, 125, 259, 320, 361, 430, 539
Hpy166II	GTNNAC	2 cut(s)	63, 136
Hpy188I	TCNGA	3 cut(s)	241, 638, 706
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	2 cut(s)	63, 136
HpyAV	CCTTC	4 cut(s)	14, 106, 142, 473
HpyCH4IV	ACGT	3 cut(s)	65, 285, 603
HpyCH4V	TGCA	2 cut(s)	484, 691
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 316, 331, 556, 649
HpyF3I	CTNAG	4 cut(s)	368, 495, 551, 705
HpySE526I	ACGT	3 cut(s)	65, 285, 603
Hsp92II	CATG	2 cut(s)	35, 315
Kzo9I	GATC	2 cut(s)	25, 625
LmnI	GCTCC	6 cut(s)	70, 154, 322, 556, 564, 657
LpnPI	CCDG	8 cut(s)	152, 179, 305, 344, 535, 575, 632, 659
Lsp1109I	GCAGC	1 cut(s)	413
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	2 cut(s)	359, 467
MaeII	ACGT	3 cut(s)	65, 285, 603
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	2 cut(s)	27, 627
MboI	GATC	2 cut(s)	25, 625
MboII	GAAGA	3 cut(s)	94, 542, 545
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	3 cut(s)	75, 561, 654
MmeI	TCCRAC	3 cut(s)	48, 109, 661
MnlI	CCTC	7 cut(s)	265, 337, 409, 412, 639, 665, 702
MroXI	GAANNNNTTC	1 cut(s)	95
MseI	TTAA	5 cut(s)	407, 576, 666, 699, 719
MslI	CAYNNNNRTG	2 cut(s)	310, 446
MspA1I	CMGCKG	2 cut(s)	426, 499
MspI	CCGG	2 cut(s)	331, 522
MspR9I	CCNGG	2 cut(s)	167, 647
MvaI	CCWGG	2 cut(s)	167, 647
MwoI	GCNNNNNNNGC	5 cut(s)	149, 316, 331, 556, 649
NcoI	CCATGG	2 cut(s)	31, 311
NdeII	GATC	2 cut(s)	25, 625
NlaIII	CATG	2 cut(s)	35, 315
NlaIV	GGNNCC	2 cut(s)	291, 653
NmuCI	GTSAC	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	428, 501
Ppu21I	YACGTR	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	561
Psp1406I	AACGTT	1 cut(s)	603
Psp6I	CCWGG	2 cut(s)	165, 645
PspGI	CCWGG	2 cut(s)	165, 645
PspN4I	GGNNCC	2 cut(s)	291, 653
PspPI	GGNCC	2 cut(s)	237, 421
PstNI	CAGNNNCTG	1 cut(s)	646
PsuI	RGATCY	1 cut(s)	625
RsaI	GTAC	2 cut(s)	225, 566
RsaNI	GTAC	2 cut(s)	224, 565
RseI	CAYNNNNRTG	2 cut(s)	310, 446
SacI	GAGCTC	1 cut(s)	561
SaqAI	TTAA	5 cut(s)	407, 576, 666, 699, 719
SatI	GCNGC	2 cut(s)	427, 500
Sau3AI	GATC	2 cut(s)	25, 625
Sau96I	GGNCC	2 cut(s)	237, 421
ScrFI	CCNGG	2 cut(s)	167, 647
SduI	GDGCHC	3 cut(s)	75, 561, 654
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	1 cut(s)	227
SgrAI	CRCCGGYG	1 cut(s)	330
SinI	GGWCC	2 cut(s)	237, 421
SmiMI	CAYNNNNRTG	2 cut(s)	310, 446
SsiI	CCGC	7 cut(s)	111, 152, 170, 334, 347, 424, 499
SspMI	CTAG	2 cut(s)	359, 467
SstI	GAGCTC	1 cut(s)	561
StyD4I	CCNGG	2 cut(s)	165, 645
StyI	CCWWGG	3 cut(s)	31, 311, 430
TaiI	ACGT	3 cut(s)	68, 288, 606
TauI	GCSGC	1 cut(s)	502
Tru1I	TTAA	5 cut(s)	407, 576, 666, 699, 719
Tru9I	TTAA	5 cut(s)	407, 576, 666, 699, 719
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	1 cut(s)	426
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	88
VpaK11BI	GGWCC	2 cut(s)	237, 421
XmiI	GTMKAC	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	2 cut(s)	359, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.