Rh6DG202800
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000751
Physical Location & Seq
Forward (+)
36147597 .. 36148857
1261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG202800.1

Sequence Viewer

Length: 741 bp
ATGAACATGTCTCGCTTTGGGGTTGAAGGAGATCACCGAGGAACAACTACACCAAGAATGTTTGAGTGGACGTTGGAGCACCACAAACAGTTCGTGAATACCTTCATCTTCTTGGGCGGTGATAAAGAAAAAGTTGGAGTACACAATGCCTTAAAGGCGGAGCTGTTGAGCCTGGCCGGGTGTTGTTGTAGAAGCTTTTACCTTGACTTCCACATTTCCTTGCTTGGGATACTACAGAAAAGGTCCGAAGCATTATTTTCCTCTAACAAAGTCACCCTTGAAAGCCTATACGTGGCACCTAAAAAGATGTCATCGCCATGGACGCTGGAGCATCACCGGCGGGTCGTGGAGGCGGTGATACAACTAGGTGGGCTTAGCAATAGCAAGACTACCCCAAAGGCCGTGCTGAAGTTAATGGATGAGGAGGACCGCTGCCAAGGTCTCACCACAAAGATGATAGCACACCACCTTCTAGGGTTGTATCATTTGCAAAAGGAAACTCAGCGGCTAATGGCTTTTGGAATGGCCGGTGGTGAAGAAGAAAGAGAGCTATCGCTTAGGGAGCTCCAGTACCTTGTTTTTAAAGGGTTGCCCCAACAACGAAATAACGTTCTATACACAAATGTAAAAGATCCTCTACTCCGACAGCACCTGGGGCTCCTCAAACAAGTTAATATGGCACACCGAATAAGATTACACATTATTAAGTCTGAGAGGGAAGTATTAAGAGCTTTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

246

Amino Acids

28.26

Weight (kDa)

9.47

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 295
AciI CCGC 6 cut(s) 117, 158, 340, 353, 430, 505
AclI AACGTT 1 cut(s) 609
AclWI GGATC 1 cut(s) 626
AcoI YGGCCR 2 cut(s) 174, 525
AcuI CTGAAG 1 cut(s) 428
AfaI GTAC 2 cut(s) 141, 572
AfiI CCNNNNNNNGG 2 cut(s) 225, 292
AflIII ACRYGT 1 cut(s) 6
AgsI TTSAA 3 cut(s) 26, 281, 737
AjnI CCWGG 2 cut(s) 171, 651
AluBI AGCT 5 cut(s) 163, 195, 550, 565, 731
AluI AGCT 5 cut(s) 163, 195, 550, 565, 731
Alw21I GWGCWC 2 cut(s) 81, 567
Alw26I GTCTC 2 cut(s) 15, 446
AlwI GGATC 1 cut(s) 626
AlwNI CAGNNNCTG 1 cut(s) 652
AoxI GGCC 3 cut(s) 174, 399, 525
ApeKI GCWGC 1 cut(s) 432
Asp700I GAANNNNTTC 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 243, 427
AsuC2I CCSGG 1 cut(s) 178
AsuHPI GGTGA 7 cut(s) 26, 131, 265, 326, 367, 436, 545
AvaII GGWCC 2 cut(s) 243, 427
BanI GGYRCC 1 cut(s) 295
BanII GRGCYC 2 cut(s) 567, 660
Bbv12I GWGCWC 2 cut(s) 81, 567
BbvI GCAGC 1 cut(s) 419
BceAI ACGGC 1 cut(s) 386
BciT130I CCWGG 2 cut(s) 173, 653
BciVI GTATCC 1 cut(s) 222
BcnI CCSGG 1 cut(s) 178
BcoDI GTCTC 2 cut(s) 15, 446
BfaI CTAG 2 cut(s) 365, 473
BfmI CTRYAG 1 cut(s) 233
BfuI GTATCC 1 cut(s) 222
BglI GCCNNNNNGGC 1 cut(s) 155
BisI GCNGC 2 cut(s) 433, 506
BlpI GCTNAGC 1 cut(s) 374
BlsI GCNGC 2 cut(s) 434, 507
Bme1390I CCNGG 3 cut(s) 173, 178, 653
Bme18I GGWCC 2 cut(s) 243, 427
BmgT120I GGNCC 2 cut(s) 243, 427
BmiI GGNNCC 2 cut(s) 297, 659
BmrFI CCNGG 3 cut(s) 173, 178, 653
BmsI GCATC 1 cut(s) 340
BpmI CTGGAG 2 cut(s) 347, 551
Bpu10I CCTNAGC 1 cut(s) 557
Bpu1102I GCTNAGC 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 178
BsaAI YACGTR 1 cut(s) 292
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 4 cut(s) 37, 317, 436, 652
BsaXI ACNNNNNCTCC 2 cut(s) 554, 584
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 292
Bse118I RCCGGY 2 cut(s) 336, 527
Bse1I ACTGG 1 cut(s) 568
BseBI CCWGG 2 cut(s) 173, 653
BseDI CCNNGG 4 cut(s) 37, 317, 436, 652
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 2 cut(s) 225, 292
BseMII CTCAG 2 cut(s) 515, 702
BseNI ACTGG 1 cut(s) 568
BseRI GAGGAG 2 cut(s) 437, 650
BseXI GCAGC 1 cut(s) 419
BshFI GGCC 3 cut(s) 176, 401, 527
BshNI GGYRCC 1 cut(s) 295
BsiHKAI GWGCWC 2 cut(s) 81, 567
BsiSI CCGG 3 cut(s) 177, 337, 528
BslI CCNNNNNNNGG 2 cut(s) 225, 292
BsmAI GTCTC 2 cut(s) 15, 446
BsnI GGCC 3 cut(s) 176, 401, 527
Bso31I GGTCTC 1 cut(s) 446
Bsp1286I GDGCHC 3 cut(s) 81, 567, 660
Bsp143I GATC 2 cut(s) 31, 631
Bsp1720I GCTNAGC 1 cut(s) 374
Bsp19I CCATGG 1 cut(s) 317
BspACI CCGC 6 cut(s) 117, 158, 340, 353, 430, 505
BspANI GGCC 3 cut(s) 176, 401, 527
BspCNI CTCAG 2 cut(s) 514, 703
BspLI GGNNCC 2 cut(s) 297, 659
BspPI GGATC 1 cut(s) 626
BspT107I GGYRCC 1 cut(s) 295
BspTNI GGTCTC 1 cut(s) 446
BsrFI RCCGGY 2 cut(s) 336, 527
BsrI ACTGG 1 cut(s) 568
BssAI RCCGGY 2 cut(s) 336, 527
BssECI CCNNGG 4 cut(s) 37, 317, 436, 652
BssMI GATC 2 cut(s) 31, 631
BssT1I CCWWGG 2 cut(s) 317, 436
Bst2UI CCWGG 2 cut(s) 173, 653
Bst4CI ACNGT 1 cut(s) 90
BstBAI YACGTR 1 cut(s) 292
BstDEI CTNAG 4 cut(s) 374, 501, 557, 711
BstDSI CCRYGG 1 cut(s) 317
BstF5I GGATG 1 cut(s) 424
BstKTI GATC 2 cut(s) 34, 634
BstMAI GTCTC 2 cut(s) 15, 446
BstMBI GATC 2 cut(s) 31, 631
BstMWI GCNNNNNNNGC 5 cut(s) 155, 322, 337, 562, 655
BstNI CCWGG 2 cut(s) 173, 653
BstNSI RCATGY 1 cut(s) 10
BstSCI CCNGG 3 cut(s) 171, 176, 651
BstSFI CTRYAG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 419
BstX2I RGATCY 1 cut(s) 631
BstYI RGATCY 1 cut(s) 631
BsuI GTATCC 1 cut(s) 222
BsuRI GGCC 3 cut(s) 176, 401, 527
BtgI CCRYGG 1 cut(s) 317
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 1 cut(s) 424
CaiI CAGNNNCTG 1 cut(s) 652
Cfr10I RCCGGY 2 cut(s) 336, 527
Cfr13I GGNCC 2 cut(s) 243, 427
CseI GACGC 1 cut(s) 331
Csp6I GTAC 2 cut(s) 140, 571
CviAII CATG 2 cut(s) 7, 318
CviQI GTAC 2 cut(s) 140, 571
DdeI CTNAG 4 cut(s) 374, 501, 557, 711
DpnI GATC 2 cut(s) 33, 633
DpnII GATC 2 cut(s) 31, 631
DraI TTTAAA 1 cut(s) 583
EaeI YGGCCR 2 cut(s) 174, 525
EciI GGCGGA 1 cut(s) 173
Ecl136II GAGCTC 1 cut(s) 565
Eco130I CCWWGG 2 cut(s) 317, 436
Eco24I GRGCYC 2 cut(s) 567, 660
Eco31I GGTCTC 1 cut(s) 446
Eco47I GGWCC 2 cut(s) 243, 427
Eco53kI GAGCTC 1 cut(s) 565
Eco57I CTGAAG 1 cut(s) 428
EcoICRI GAGCTC 1 cut(s) 565
EcoRII CCWGG 2 cut(s) 171, 651
EcoT14I CCWWGG 2 cut(s) 317, 436
EcoT38I GRGCYC 2 cut(s) 567, 660
ErhI CCWWGG 2 cut(s) 317, 436
FaeI CATG 2 cut(s) 10, 321
FaiI YATR 5 cut(s) 8, 289, 319, 616, 677
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 2 cut(s) 6, 317
FauI CCCGC 1 cut(s) 333
Fnu4HI GCNGC 2 cut(s) 433, 506
FokI GGATG 1 cut(s) 431
FriOI GRGCYC 2 cut(s) 567, 660
Fsp4HI GCNGC 2 cut(s) 433, 506
FspBI CTAG 2 cut(s) 365, 473
GluI GCNGC 2 cut(s) 433, 506
GsuI CTGGAG 2 cut(s) 347, 551
HaeIII GGCC 3 cut(s) 176, 401, 527
HapII CCGG 3 cut(s) 177, 337, 528
HgaI GACGC 1 cut(s) 331
Hin1II CATG 2 cut(s) 10, 321
HindIII AAGCTT 1 cut(s) 193
HpaII CCGG 3 cut(s) 177, 337, 528
HphI GGTGA 7 cut(s) 26, 131, 265, 326, 367, 436, 545
Hpy166II GTNNAC 2 cut(s) 69, 142
Hpy188I TCNGA 3 cut(s) 247, 644, 712
Hpy188III TCNNGA 1 cut(s) 94
Hpy8I GTNNAC 2 cut(s) 69, 142
HpyAV CCTTC 3 cut(s) 20, 112, 479
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4IV ACGT 3 cut(s) 71, 291, 609
HpyCH4V TGCA 1 cut(s) 490
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 322, 337, 562, 655
HpyF3I CTNAG 4 cut(s) 374, 501, 557, 711
HpySE526I ACGT 3 cut(s) 71, 291, 609
Hsp92II CATG 2 cut(s) 10, 321
Kzo9I GATC 2 cut(s) 31, 631
LmnI GCTCC 6 cut(s) 76, 160, 328, 562, 570, 663
LpnPI CCDG 9 cut(s) 158, 185, 190, 311, 350, 541, 581, 638, 665
Lsp1109I GCAGC 1 cut(s) 419
LweI GCATC 1 cut(s) 340
MaeI CTAG 2 cut(s) 365, 473
MaeII ACGT 3 cut(s) 71, 291, 609
MaeIII GTNAC 1 cut(s) 271
MalI GATC 2 cut(s) 33, 633
MboI GATC 2 cut(s) 31, 631
MboII GAAGA 3 cut(s) 100, 548, 551
MflI RGATCY 1 cut(s) 631
MhlI GDGCHC 3 cut(s) 81, 567, 660
MmeI TCCRAC 3 cut(s) 54, 115, 667
MnlI CCTC 8 cut(s) 32, 271, 343, 415, 418, 645, 671, 708
MroXI GAANNNNTTC 1 cut(s) 101
MseI TTAA 6 cut(s) 152, 413, 582, 672, 705, 725
MslI CAYNNNNRTG 2 cut(s) 316, 452
MspA1I CMGCKG 2 cut(s) 432, 505
MspI CCGG 3 cut(s) 177, 337, 528
MspR9I CCNGG 3 cut(s) 173, 178, 653
MvaI CCWGG 2 cut(s) 173, 653
MwoI GCNNNNNNNGC 5 cut(s) 155, 322, 337, 562, 655
NciI CCSGG 1 cut(s) 178
NcoI CCATGG 1 cut(s) 317
NdeII GATC 2 cut(s) 31, 631
NlaIII CATG 2 cut(s) 10, 321
NlaIV GGNNCC 2 cut(s) 297, 659
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 10
PciI ACATGT 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 101
PkrI GCNGC 2 cut(s) 434, 507
Ppu21I YACGTR 1 cut(s) 292
PscI ACATGT 1 cut(s) 6
Psp124BI GAGCTC 1 cut(s) 567
Psp1406I AACGTT 1 cut(s) 609
Psp6I CCWGG 2 cut(s) 171, 651
PspGI CCWGG 2 cut(s) 171, 651
PspN4I GGNNCC 2 cut(s) 297, 659
PspPI GGNCC 2 cut(s) 243, 427
PstNI CAGNNNCTG 1 cut(s) 652
PsuI RGATCY 1 cut(s) 631
RsaI GTAC 2 cut(s) 141, 572
RsaNI GTAC 2 cut(s) 140, 571
RseI CAYNNNNRTG 2 cut(s) 316, 452
SacI GAGCTC 1 cut(s) 567
SaqAI TTAA 6 cut(s) 152, 413, 582, 672, 705, 725
SatI GCNGC 2 cut(s) 433, 506
Sau3AI GATC 2 cut(s) 31, 631
Sau96I GGNCC 2 cut(s) 243, 427
ScrFI CCNGG 3 cut(s) 173, 178, 653
SduI GDGCHC 3 cut(s) 81, 567, 660
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 1 cut(s) 233
SgrAI CRCCGGYG 1 cut(s) 336
SinI GGWCC 2 cut(s) 243, 427
SmiMI CAYNNNNRTG 2 cut(s) 316, 452
SsiI CCGC 6 cut(s) 117, 158, 340, 353, 430, 505
SspMI CTAG 2 cut(s) 365, 473
SstI GAGCTC 1 cut(s) 567
StyD4I CCNGG 3 cut(s) 171, 176, 651
StyI CCWWGG 2 cut(s) 317, 436
TaaI ACNGT 1 cut(s) 90
TaiI ACGT 3 cut(s) 74, 294, 612
TatI WGTACW 1 cut(s) 139
TauI GCSGC 1 cut(s) 508
Tru1I TTAA 6 cut(s) 152, 413, 582, 672, 705, 725
Tru9I TTAA 6 cut(s) 152, 413, 582, 672, 705, 725
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 1 cut(s) 432
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 2 cut(s) 17, 94
VpaK11BI GGWCC 2 cut(s) 243, 427
XceI RCATGY 1 cut(s) 10
XmnI GAANNNNTTC 1 cut(s) 101
XspI CTAG 2 cut(s) 365, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.