Rroxscaffold_7G00193140
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000751
Physical Location & Seq
Reverse (-)
34488541 .. 34489405
865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00193140.1

Sequence Viewer

Length: 729 bp
ATGTCTCGCTTTGGGGTTGAAGGAGATCACCGAGGAACAACTACACCAAGAATGTTTGAGTGGACGTTGGAGCACCACAAACAGTTAGTGAATACCTTCATCTTCTTGGGCGGTGATAAAGAAAAAGTTGGAGTACACAATGCCTTGAAGGCGGAGCTGTTAAGCCTGGCGGGGTGTTGCTGTAGAAGCTTTTACCTTGACTTCCACATTTCCTTGCTTGGGGTACTACAGAAAAGGTCCGAAGCATTATTTTCCTCTAACAAAGTCACCCTTGAAACCCTATACGTGGCACCTAAAAAGATGTCATCGCCATGGACGCTGGAGCATCACCGGCGGGTCGTGGAGGCGGTGATACAACTAGGTGGGCTTAGCAATAGCAAGACTACCCCAAAGGCCGTGCTGAAGTTAATGGATGAAGAGGACCGCTGCCAAGGCCTCACCACAAAGATGATAGCACACCACCTTTTAGGGTTGTATCATTTGCAAAAGGAAACTCAGCGGCTAATGGCTTTTGGAATGGCCGGTGGTGAAGAAGAAAGAGAGCTATCGCTTAGGGAGCTCCAGTACCTTGTTTTTAAAGGGTTGCCCCAACAACGAAATAACGTTCTGTACACAAATGTAAAAGATCCTCTACTCCGACAGCACCTGGGGCTCCTCAAACAAGATGATCAAGATGTCCAAGATAGTGATCTGAACATGGATGTCGATCCTGAAAATGTGGATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

242

Amino Acids

27.57

Weight (kDa)

6.41

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 289
AciI CCGC 7 cut(s) 111, 152, 170, 334, 347, 424, 499
AclI AACGTT 1 cut(s) 603
AclWI GGATC 2 cut(s) 620, 701
AcoI YGGCCR 1 cut(s) 519
AcuI CTGAAG 1 cut(s) 422
AfaI GTAC 4 cut(s) 135, 225, 566, 611
AfiI CCNNNNNNNGG 2 cut(s) 219, 286
AgsI TTSAA 3 cut(s) 20, 148, 275
AjnI CCWGG 2 cut(s) 165, 645
AluBI AGCT 4 cut(s) 157, 189, 544, 559
AluI AGCT 4 cut(s) 157, 189, 544, 559
Alw21I GWGCWC 2 cut(s) 75, 561
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 2 cut(s) 620, 701
AlwNI CAGNNNCTG 1 cut(s) 646
AoxI GGCC 3 cut(s) 393, 433, 519
ApeKI GCWGC 1 cut(s) 426
Asp700I GAANNNNTTC 1 cut(s) 95
AspS9I GGNCC 2 cut(s) 237, 421
AsuHPI GGTGA 7 cut(s) 20, 125, 259, 320, 361, 430, 539
AvaII GGWCC 2 cut(s) 237, 421
BanI GGYRCC 1 cut(s) 289
BanII GRGCYC 2 cut(s) 561, 654
Bbv12I GWGCWC 2 cut(s) 75, 561
BbvI GCAGC 1 cut(s) 413
BceAI ACGGC 1 cut(s) 380
BciT130I CCWGG 2 cut(s) 167, 647
BclI TGATCA 1 cut(s) 667
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 2 cut(s) 181, 227
BglI GCCNNNNNGGC 1 cut(s) 149
BisI GCNGC 2 cut(s) 427, 500
BlpI GCTNAGC 1 cut(s) 368
BlsI GCNGC 2 cut(s) 428, 501
Bme1390I CCNGG 2 cut(s) 167, 647
Bme18I GGWCC 2 cut(s) 237, 421
BmgT120I GGNCC 2 cut(s) 237, 421
BmiI GGNNCC 2 cut(s) 291, 653
BmrFI CCNGG 2 cut(s) 167, 647
BmsI GCATC 1 cut(s) 334
BpmI CTGGAG 2 cut(s) 341, 545
Bpu10I CCTNAGC 1 cut(s) 551
Bpu1102I GCTNAGC 1 cut(s) 368
BsaAI YACGTR 1 cut(s) 286
BsaBI GATNNNNATC 2 cut(s) 687, 705
BsaJI CCNNGG 4 cut(s) 31, 311, 430, 646
BsaXI ACNNNNNCTCC 2 cut(s) 548, 578
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 286
Bse118I RCCGGY 2 cut(s) 330, 521
Bse1I ACTGG 1 cut(s) 562
Bse8I GATNNNNATC 2 cut(s) 687, 705
BseBI CCWGG 2 cut(s) 167, 647
BseDI CCNNGG 4 cut(s) 31, 311, 430, 646
BseGI GGATG 2 cut(s) 418, 706
BseJI GATNNNNATC 2 cut(s) 687, 705
BseLI CCNNNNNNNGG 2 cut(s) 219, 286
BseMII CTCAG 1 cut(s) 509
BseNI ACTGG 1 cut(s) 562
BseRI GAGGAG 1 cut(s) 644
BseXI GCAGC 1 cut(s) 413
BshFI GGCC 3 cut(s) 395, 435, 521
BshNI GGYRCC 1 cut(s) 289
BsiHKAI GWGCWC 2 cut(s) 75, 561
BsiSI CCGG 2 cut(s) 331, 522
BslI CCNNNNNNNGG 2 cut(s) 219, 286
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 3 cut(s) 395, 435, 521
Bsp1286I GDGCHC 3 cut(s) 75, 561, 654
Bsp1407I TGTACA 1 cut(s) 609
Bsp143I GATC 6 cut(s) 25, 625, 667, 688, 706, 721
Bsp1720I GCTNAGC 1 cut(s) 368
Bsp19I CCATGG 1 cut(s) 311
BspACI CCGC 7 cut(s) 111, 152, 170, 334, 347, 424, 499
BspANI GGCC 3 cut(s) 395, 435, 521
BspCNI CTCAG 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 291, 653
BspPI GGATC 2 cut(s) 620, 701
BspT107I GGYRCC 1 cut(s) 289
BsrFI RCCGGY 2 cut(s) 330, 521
BsrGI TGTACA 1 cut(s) 609
BsrI ACTGG 1 cut(s) 562
BssAI RCCGGY 2 cut(s) 330, 521
BssECI CCNNGG 4 cut(s) 31, 311, 430, 646
BssMI GATC 6 cut(s) 25, 625, 667, 688, 706, 721
BssT1I CCWWGG 2 cut(s) 311, 430
Bst2UI CCWGG 2 cut(s) 167, 647
Bst4CI ACNGT 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 411
BstAUI TGTACA 1 cut(s) 609
BstBAI YACGTR 1 cut(s) 286
BstDEI CTNAG 3 cut(s) 368, 495, 551
BstDSI CCRYGG 1 cut(s) 311
BstF5I GGATG 2 cut(s) 418, 706
BstKTI GATC 6 cut(s) 28, 628, 670, 691, 709, 724
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 6 cut(s) 25, 625, 667, 688, 706, 721
BstMWI GCNNNNNNNGC 7 cut(s) 149, 186, 316, 331, 432, 556, 649
BstNI CCWGG 2 cut(s) 167, 647
BstSCI CCNGG 2 cut(s) 165, 645
BstSFI CTRYAG 2 cut(s) 181, 227
BstV1I GCAGC 1 cut(s) 413
BstX2I RGATCY 1 cut(s) 625
BstYI RGATCY 1 cut(s) 625
BsuRI GGCC 3 cut(s) 395, 435, 521
BtgI CCRYGG 1 cut(s) 311
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 2 cut(s) 418, 706
CaiI CAGNNNCTG 1 cut(s) 646
Cfr10I RCCGGY 2 cut(s) 330, 521
Cfr13I GGNCC 2 cut(s) 237, 421
CseI GACGC 1 cut(s) 325
Csp6I GTAC 4 cut(s) 134, 224, 565, 610
CviAII CATG 2 cut(s) 312, 697
CviQI GTAC 4 cut(s) 134, 224, 565, 610
DdeI CTNAG 3 cut(s) 368, 495, 551
DpnI GATC 6 cut(s) 27, 627, 669, 690, 708, 723
DpnII GATC 6 cut(s) 25, 625, 667, 688, 706, 721
DraI TTTAAA 1 cut(s) 577
EaeI YGGCCR 1 cut(s) 519
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
EciI GGCGGA 1 cut(s) 167
Ecl136II GAGCTC 1 cut(s) 559
Eco130I CCWWGG 2 cut(s) 311, 430
Eco147I AGGCCT 1 cut(s) 435
Eco24I GRGCYC 2 cut(s) 561, 654
Eco47I GGWCC 2 cut(s) 237, 421
Eco53kI GAGCTC 1 cut(s) 559
Eco57I CTGAAG 1 cut(s) 422
EcoICRI GAGCTC 1 cut(s) 559
EcoRII CCWGG 2 cut(s) 165, 645
EcoT14I CCWWGG 2 cut(s) 311, 430
EcoT38I GRGCYC 2 cut(s) 561, 654
ErhI CCWWGG 2 cut(s) 311, 430
FaeI CATG 2 cut(s) 315, 700
FaiI YATR 3 cut(s) 283, 313, 698
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FatI CATG 2 cut(s) 311, 696
FauI CCCGC 2 cut(s) 163, 327
FbaI TGATCA 1 cut(s) 667
Fnu4HI GCNGC 2 cut(s) 427, 500
FokI GGATG 2 cut(s) 425, 713
FriOI GRGCYC 2 cut(s) 561, 654
Fsp4HI GCNGC 2 cut(s) 427, 500
FspBI CTAG 1 cut(s) 359
GluI GCNGC 2 cut(s) 427, 500
GsuI CTGGAG 2 cut(s) 341, 545
HaeIII GGCC 3 cut(s) 395, 435, 521
HapII CCGG 2 cut(s) 331, 522
HgaI GACGC 1 cut(s) 325
Hin1II CATG 2 cut(s) 315, 700
HindIII AAGCTT 1 cut(s) 187
HpaII CCGG 2 cut(s) 331, 522
HphI GGTGA 7 cut(s) 20, 125, 259, 320, 361, 430, 539
Hpy166II GTNNAC 3 cut(s) 63, 136, 612
Hpy188I TCNGA 3 cut(s) 241, 638, 693
Hpy188III TCNNGA 2 cut(s) 671, 710
Hpy8I GTNNAC 3 cut(s) 63, 136, 612
HpyAV CCTTC 3 cut(s) 14, 106, 142
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4IV ACGT 3 cut(s) 65, 285, 603
HpyCH4V TGCA 1 cut(s) 484
HpyF10VI GCNNNNNNNGC 7 cut(s) 149, 186, 316, 331, 432, 556, 649
HpyF3I CTNAG 3 cut(s) 368, 495, 551
HpySE526I ACGT 3 cut(s) 65, 285, 603
Hsp92II CATG 2 cut(s) 315, 700
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 6 cut(s) 25, 625, 667, 688, 706, 721
LmnI GCTCC 6 cut(s) 70, 154, 322, 556, 564, 657
LpnPI CCDG 9 cut(s) 152, 179, 305, 344, 535, 575, 632, 659, 723
Lsp1109I GCAGC 1 cut(s) 413
LweI GCATC 1 cut(s) 334
MaeI CTAG 1 cut(s) 359
MaeII ACGT 3 cut(s) 65, 285, 603
MaeIII GTNAC 1 cut(s) 265
MalI GATC 6 cut(s) 27, 627, 669, 690, 708, 723
MboI GATC 6 cut(s) 25, 625, 667, 688, 706, 721
MboII GAAGA 4 cut(s) 94, 428, 542, 545
MflI RGATCY 1 cut(s) 625
MhlI GDGCHC 3 cut(s) 75, 561, 654
MmeI TCCRAC 3 cut(s) 48, 109, 661
MnlI CCTC 7 cut(s) 26, 265, 337, 412, 446, 639, 665
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 3 cut(s) 161, 407, 576
MslI CAYNNNNRTG 2 cut(s) 310, 446
MspA1I CMGCKG 2 cut(s) 426, 499
MspI CCGG 2 cut(s) 331, 522
MspR9I CCNGG 2 cut(s) 167, 647
MvaI CCWGG 2 cut(s) 167, 647
MwoI GCNNNNNNNGC 7 cut(s) 149, 186, 316, 331, 432, 556, 649
NcoI CCATGG 1 cut(s) 311
NdeII GATC 6 cut(s) 25, 625, 667, 688, 706, 721
NlaIII CATG 2 cut(s) 315, 700
NlaIV GGNNCC 2 cut(s) 291, 653
NmuCI GTSAC 1 cut(s) 265
PceI AGGCCT 1 cut(s) 435
PdmI GAANNNNTTC 1 cut(s) 95
PkrI GCNGC 2 cut(s) 428, 501
Ppu21I YACGTR 1 cut(s) 286
Psp124BI GAGCTC 1 cut(s) 561
Psp1406I AACGTT 1 cut(s) 603
Psp6I CCWGG 2 cut(s) 165, 645
PspGI CCWGG 2 cut(s) 165, 645
PspN4I GGNNCC 2 cut(s) 291, 653
PspPI GGNCC 2 cut(s) 237, 421
PstNI CAGNNNCTG 1 cut(s) 646
PsuI RGATCY 1 cut(s) 625
RsaI GTAC 4 cut(s) 135, 225, 566, 611
RsaNI GTAC 4 cut(s) 134, 224, 565, 610
RseI CAYNNNNRTG 2 cut(s) 310, 446
SacI GAGCTC 1 cut(s) 561
SaqAI TTAA 3 cut(s) 161, 407, 576
SatI GCNGC 2 cut(s) 427, 500
Sau3AI GATC 6 cut(s) 25, 625, 667, 688, 706, 721
Sau96I GGNCC 2 cut(s) 237, 421
ScrFI CCNGG 2 cut(s) 167, 647
SduI GDGCHC 3 cut(s) 75, 561, 654
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 2 cut(s) 181, 227
SgrAI CRCCGGYG 1 cut(s) 330
SinI GGWCC 2 cut(s) 237, 421
SmiMI CAYNNNNRTG 2 cut(s) 310, 446
SseBI AGGCCT 1 cut(s) 435
SsiI CCGC 7 cut(s) 111, 152, 170, 334, 347, 424, 499
SspMI CTAG 1 cut(s) 359
SstI GAGCTC 1 cut(s) 561
StuI AGGCCT 1 cut(s) 435
StyD4I CCNGG 2 cut(s) 165, 645
StyI CCWWGG 2 cut(s) 311, 430
TaaI ACNGT 1 cut(s) 84
TaiI ACGT 3 cut(s) 68, 288, 606
TaqI TCGA 1 cut(s) 705
TatI WGTACW 2 cut(s) 133, 609
TauI GCSGC 1 cut(s) 502
Tru1I TTAA 3 cut(s) 161, 407, 576
Tru9I TTAA 3 cut(s) 161, 407, 576
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 1 cut(s) 426
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 2 cut(s) 88, 429
VpaK11BI GGWCC 2 cut(s) 237, 421
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.