Rorug06G0094500
MYB Family

Myb family transcription factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
12640080 .. 12641680
1601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0094500.1

Sequence Viewer

Length: 1272 bp
ATGCTGTTTAGCGGTGCCAAGATTTACAAGTTGGATTGTGTTGATATTACGGTGTTGAAGAACAATGGAAGTTGCAGCAAAAATGCTTCTATTTCATTTGAAGATAGCTGCTCCGGTATTGTGGATGAAGATGATTACCTCACTGAGGCATTTAGAACTAAAGTTCAAAAGTCTTACTTGTCGAATGAGTGGGCTAGTTACATTCAAAGTGTAGGGCAGAAATTTCGTGGCGGTTCCCCCAAGTTCCGAGAGAAGCTCAGAAAATATGCTGTTGAAGTTGGGTTCAGCTTTGTGTTTATTAGAAATGATTGGGATAGAATTCATGCGGTTTGTTCCAATTGGGGAACCGAAGGATGTGATTGGAATGTCCGTGGTTATGTATCCCCTGCAAATGGATGCTTTATAATTGGTGATTTGAACAATGTGCACCCTTGCAAAGGTGTTCTTCGGAAGCAAAAACATGAGCTTTTGGGATCGAAAATTGTCAAGACATGTATTGAAGAGGACATTAGCTATAACTTATCATTGAAGCCAAGGGAAATTATCATCAAGTTCAAGTCAGCTTATGGGTTTGATATATCGTACAAGGTTTCTTGGAAAGCAAAGCAGAAGGCTAGGGAAATGATTTATGGTTCTGAGGCTGATTCGTTTAACAAGTTAACATGGTATAGGGATGCTGTATTTGAGACTAACCTGGGATCTTCGTTTGTTTTGGAAGTTGATCCATCGAGCAATCGGTTTCAGAGGCTTTTCCTAGCTTATGCAGGCTGTGTTAAAGGTTTTGAATTCTGTCTTCCCGTCTTGTTTGTCGATGGGACTTTTGGGAAGAGTGTCTACAAGGGGCAGATACTTTGTGCAACTGGAAAGAATGGAAATCATGGTTTCTTTCCTCTTGCAATGTGTGTCTGTGATTCTGAGACTGATGCTAATTGGTCTTTTTTCTTCCAACACTTGAAGAGCTTGCTGGAACCTCAAGGTAGATTAATTACGTTTATTAGTGATCGTGGTGTTGTACTGTTGAGTGCTTTCGACAAGATATTTCCTGGTAATCCTCATCTTTTCTGTTACAAGCACTTGGTGCATAACCTTATGACTAAATACAACGGTAAAGGGTCTTCTGTTTTGAAAGATGATGTTAAAAAGAAGTTTTTTGAGTTGGCATATTCGTGCACTGAAAAGGAATATCATTTTCATTTAAGAGAGTTGAGAGAAGTTTGTGGTGTTGATATTATAGATTCATTTCTTGCTGATTTGCCTCTTCAAAATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

423

Amino Acids

48.16

Weight (kDa)

8.46

Isoelectric Point (pI)

22.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 70 - 136 1.4e-08 MuDR family transposase
MULE PF10551 267 - 362 7e-14 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 404
AccB1I GGYRCC 1 cut(s) 14
AccI GTMKAC 1 cut(s) 834
AciI CCGC 3 cut(s) 12, 231, 326
AclWI GGATC 3 cut(s) 481, 706, 716
AcsI RAATTY 3 cut(s) 221, 318, 785
AdeI CACNNNGTG 1 cut(s) 1078
AfaI GTAC 2 cut(s) 584, 1014
AfiI CCNNNNNNNGG 3 cut(s) 145, 392, 437
AflIII ACRYGT 1 cut(s) 491
AjnI CCWGG 2 cut(s) 693, 1042
AluBI AGCT 8 cut(s) 108, 256, 288, 466, 513, 563, 758, 960
AluI AGCT 8 cut(s) 108, 256, 288, 466, 513, 563, 758, 960
Alw21I GWGCWC 2 cut(s) 429, 1172
Alw26I GTCTC 2 cut(s) 680, 911
Alw44I GTGCAC 2 cut(s) 425, 1168
AlwI GGATC 3 cut(s) 481, 706, 716
ApaLI GTGCAC 2 cut(s) 425, 1168
ApeKI GCWGC 2 cut(s) 75, 108
ApoI RAATTY 3 cut(s) 221, 318, 785
AseI ATTAAT 1 cut(s) 983
AsuHPI GGTGA 1 cut(s) 422
BaeGI GKGCMC 2 cut(s) 429, 1172
BanI GGYRCC 1 cut(s) 14
BarI GAAGNNNNNNTAC 4 cut(s) 818, 850, 1099, 1131
BbsI GAAGAC 2 cut(s) 785, 1107
Bbv12I GWGCWC 2 cut(s) 429, 1172
BbvI GCAGC 2 cut(s) 87, 95
BccI CCATC 2 cut(s) 733, 806
BcgI CGANNNNNNTGC 2 cut(s) 206, 240
BciT130I CCWGG 2 cut(s) 695, 1044
BciVI GTATCC 1 cut(s) 391
BcoDI GTCTC 2 cut(s) 680, 911
BfaI CTAG 3 cut(s) 195, 615, 755
BfuI GTATCC 1 cut(s) 391
BisI GCNGC 2 cut(s) 76, 109
BlsI GCNGC 2 cut(s) 77, 110
Bme1390I CCNGG 2 cut(s) 695, 1044
BmiI GGNNCC 4 cut(s) 16, 235, 346, 969
BmrFI CCNGG 2 cut(s) 695, 1044
BmsI GCATC 3 cut(s) 386, 664, 913
BpiI GAAGAC 2 cut(s) 785, 1107
BplI GAGNNNNNCTC 2 cut(s) 240, 272
BpuEI CTTGAG 1 cut(s) 957
BsaJI CCNNGG 3 cut(s) 370, 533, 694
BsaWI WCCGGW 1 cut(s) 113
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 392, 437
Bse1I ACTGG 1 cut(s) 865
Bse3DI GCAATG 1 cut(s) 903
BseBI CCWGG 2 cut(s) 695, 1044
BseDI CCNNGG 3 cut(s) 370, 533, 694
BseGI GGATG 4 cut(s) 130, 359, 401, 679
BseLI CCNNNNNNNGG 3 cut(s) 145, 392, 437
BseMI GCAATG 1 cut(s) 903
BseMII CTCAG 4 cut(s) 135, 271, 627, 906
BseNI ACTGG 1 cut(s) 865
BseSI GKGCMC 2 cut(s) 429, 1172
BseXI GCAGC 2 cut(s) 87, 95
BshNI GGYRCC 1 cut(s) 14
BsiHKAI GWGCWC 2 cut(s) 429, 1172
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 829
BslI CCNNNNNNNGG 3 cut(s) 145, 392, 437
BsmAI GTCTC 2 cut(s) 680, 911
BsmFI GGGAC 1 cut(s) 829
Bsp1286I GDGCHC 2 cut(s) 429, 1172
Bsp143I GATC 4 cut(s) 473, 698, 721, 1000
BspACI CCGC 3 cut(s) 12, 231, 326
BspCNI CTCAG 4 cut(s) 136, 270, 628, 907
BspLI GGNNCC 4 cut(s) 16, 235, 346, 969
BspPI GGATC 3 cut(s) 481, 706, 716
BspQI GCTCTTC 1 cut(s) 950
BspT107I GGYRCC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 903
BsrI ACTGG 1 cut(s) 865
BssECI CCNNGG 3 cut(s) 370, 533, 694
BssMI GATC 4 cut(s) 473, 698, 721, 1000
BssT1I CCWWGG 1 cut(s) 533
Bst2UI CCWGG 2 cut(s) 695, 1044
Bst4CI ACNGT 3 cut(s) 52, 1017, 1106
Bst6I CTCTTC 4 cut(s) 495, 821, 950, 1263
BstAPI GCANNNNNTGC 1 cut(s) 1078
BstC8I GCNNGC 2 cut(s) 766, 962
BstDEI CTNAG 4 cut(s) 144, 257, 636, 915
BstDSI CCRYGG 1 cut(s) 370
BstENI CCTNNNNNAGG 2 cut(s) 143, 435
BstF5I GGATG 4 cut(s) 130, 359, 401, 679
BstKTI GATC 4 cut(s) 476, 701, 724, 1003
BstMAI GTCTC 2 cut(s) 680, 911
BstMBI GATC 4 cut(s) 473, 698, 721, 1000
BstMWI GCNNNNNNNGC 1 cut(s) 1078
BstNI CCWGG 2 cut(s) 695, 1044
BstNSI RCATGY 1 cut(s) 495
BstSCI CCNGG 2 cut(s) 693, 1042
BstSLI GKGCMC 2 cut(s) 429, 1172
BstV1I GCAGC 2 cut(s) 87, 95
BstV2I GAAGAC 2 cut(s) 785, 1107
BstX2I RGATCY 1 cut(s) 698
BstYI RGATCY 1 cut(s) 698
BsuI GTATCC 1 cut(s) 391
BtgI CCRYGG 1 cut(s) 370
BtsCI GGATG 4 cut(s) 130, 359, 401, 679
BtsIMutI CAGTG 2 cut(s) 141, 1170
Cac8I GCNNGC 2 cut(s) 766, 962
Csp6I GTAC 2 cut(s) 583, 1013
CviAII CATG 5 cut(s) 323, 461, 492, 663, 878
CviQI GTAC 2 cut(s) 583, 1013
DdeI CTNAG 4 cut(s) 144, 257, 636, 915
DpnI GATC 4 cut(s) 475, 700, 723, 1002
DpnII GATC 4 cut(s) 473, 698, 721, 1000
DraIII CACNNNGTG 1 cut(s) 1078
Eam1104I CTCTTC 4 cut(s) 495, 821, 950, 1263
EarI CTCTTC 4 cut(s) 495, 821, 950, 1263
Eco130I CCWWGG 1 cut(s) 533
EcoNI CCTNNNNNAGG 2 cut(s) 143, 435
EcoRI GAATTC 2 cut(s) 318, 785
EcoRII CCWGG 2 cut(s) 693, 1042
EcoT14I CCWWGG 1 cut(s) 533
ErhI CCWWGG 1 cut(s) 533
FaeI CATG 5 cut(s) 326, 464, 495, 666, 881
FalI AAGNNNNNCTT 4 cut(s) 161, 193, 429, 461
FaqI GGGAC 1 cut(s) 829
FatI CATG 5 cut(s) 322, 460, 491, 662, 877
FblI GTMKAC 1 cut(s) 834
Fnu4HI GCNGC 2 cut(s) 76, 109
FokI GGATG 4 cut(s) 137, 366, 408, 686
Fsp4HI GCNGC 2 cut(s) 76, 109
FspBI CTAG 3 cut(s) 195, 615, 755
GluI GCNGC 2 cut(s) 76, 109
HapII CCGG 1 cut(s) 114
Hin1II CATG 5 cut(s) 326, 464, 495, 666, 881
HincII GTYRAC 1 cut(s) 660
HindII GTYRAC 1 cut(s) 660
HinfI GANTC 3 cut(s) 644, 911, 1235
HpaI GTTAAC 1 cut(s) 660
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 4 cut(s) 427, 660, 835, 1170
Hpy188I TCNGA 6 cut(s) 248, 260, 450, 637, 744, 916
Hpy188III TCNNGA 1 cut(s) 487
Hpy8I GTNNAC 4 cut(s) 427, 660, 835, 1170
HpyAV CCTTC 2 cut(s) 344, 604
HpyCH4III ACNGT 3 cut(s) 52, 1017, 1106
HpyCH4IV ACGT 1 cut(s) 989
HpyCH4V TGCA 9 cut(s) 75, 389, 427, 435, 764, 857, 896, 1081, 1170
HpyF10VI GCNNNNNNNGC 1 cut(s) 1078
HpyF3I CTNAG 4 cut(s) 144, 257, 636, 915
HpySE526I ACGT 1 cut(s) 989
Hsp92II CATG 5 cut(s) 326, 464, 495, 666, 881
KspAI GTTAAC 1 cut(s) 660
Kzo9I GATC 4 cut(s) 473, 698, 721, 1000
LguI GCTCTTC 1 cut(s) 950
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 9 cut(s) 127, 399, 680, 707, 750, 846, 950, 1029, 1056
Lsp1109I GCAGC 2 cut(s) 87, 95
LweI GCATC 3 cut(s) 386, 664, 913
MaeI CTAG 3 cut(s) 195, 615, 755
MaeII ACGT 1 cut(s) 989
MaeIII GTNAC 2 cut(s) 197, 1064
MalI GATC 4 cut(s) 475, 700, 723, 1002
MboI GATC 4 cut(s) 473, 698, 721, 1000
MfeI CAATTG 1 cut(s) 337
MflI RGATCY 1 cut(s) 698
MhlI GDGCHC 2 cut(s) 429, 1172
MmeI TCCRAC 2 cut(s) 12, 970
MnlI CCTC 9 cut(s) 139, 149, 496, 631, 738, 900, 981, 1062, 1266
MseI TTAA 6 cut(s) 651, 659, 774, 983, 1137, 1196
MslI CAYNNNNRTG 1 cut(s) 1165
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 2 cut(s) 695, 1044
MunI CAATTG 1 cut(s) 337
MvaI CCWGG 2 cut(s) 695, 1044
MwoI GCNNNNNNNGC 1 cut(s) 1078
NdeII GATC 4 cut(s) 473, 698, 721, 1000
NlaIII CATG 5 cut(s) 326, 464, 495, 666, 881
NlaIV GGNNCC 4 cut(s) 16, 235, 346, 969
NspI RCATGY 1 cut(s) 495
PciI ACATGT 1 cut(s) 491
PciSI GCTCTTC 1 cut(s) 950
PfeI GAWTC 3 cut(s) 644, 911, 1235
PkrI GCNGC 2 cut(s) 77, 110
PscI ACATGT 1 cut(s) 491
PshBI ATTAAT 1 cut(s) 983
PsiI TTATAA 1 cut(s) 404
Psp6I CCWGG 2 cut(s) 693, 1042
PspGI CCWGG 2 cut(s) 693, 1042
PspN4I GGNNCC 4 cut(s) 16, 235, 346, 969
PsuI RGATCY 1 cut(s) 698
RsaI GTAC 2 cut(s) 584, 1014
RsaNI GTAC 2 cut(s) 583, 1013
RseI CAYNNNNRTG 1 cut(s) 1165
SapI GCTCTTC 1 cut(s) 950
SaqAI TTAA 6 cut(s) 651, 659, 774, 983, 1137, 1196
SatI GCNGC 2 cut(s) 76, 109
Sau3AI GATC 4 cut(s) 473, 698, 721, 1000
ScrFI CCNGG 2 cut(s) 695, 1044
SduI GDGCHC 2 cut(s) 429, 1172
SfaNI GCATC 3 cut(s) 386, 664, 913
SmiMI CAYNNNNRTG 1 cut(s) 1165
SmlI CTYRAG 1 cut(s) 972
SmoI CTYRAG 1 cut(s) 972
SsiI CCGC 3 cut(s) 12, 231, 326
SspMI CTAG 3 cut(s) 195, 615, 755
StyD4I CCNGG 2 cut(s) 693, 1042
StyI CCWWGG 1 cut(s) 533
TaaI ACNGT 3 cut(s) 52, 1017, 1106
TaiI ACGT 1 cut(s) 992
TaqI TCGA 5 cut(s) 182, 476, 728, 810, 1029
TatI WGTACW 1 cut(s) 1012
TfiI GAWTC 3 cut(s) 644, 911, 1235
Tru1I TTAA 6 cut(s) 651, 659, 774, 983, 1137, 1196
Tru9I TTAA 6 cut(s) 651, 659, 774, 983, 1137, 1196
TscAI CASTG 2 cut(s) 148, 1177
TseI GCWGC 2 cut(s) 75, 108
TspDTI ATGAA 5 cut(s) 84, 141, 311, 1181, 1227
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 2 cut(s) 148, 1177
VneI GTGCAC 2 cut(s) 425, 1168
VspI ATTAAT 1 cut(s) 983
XagI CCTNNNNNAGG 2 cut(s) 143, 435
XapI RAATTY 3 cut(s) 221, 318, 785
XceI RCATGY 1 cut(s) 495
XmiI GTMKAC 1 cut(s) 834
XspI CTAG 3 cut(s) 195, 615, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.