Rh1DG326300
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000751
Physical Location & Seq
Forward (+)
55131051 .. 55132060
1010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG326300.1

Sequence Viewer

Length: 591 bp
ATGGATGTGGACGCGGATGGTCAAGAACCAATGGAGTGGACGCTGGAGCACCACAAGACGTTTGTGGACATAGTGGTCCGGCTGGGTGGCTTTAACAAAATCGGAACACCGAGGATCGTAGTAGCAGAGATGATGAACAATGTGAAGGGTCTTTCCCAGAGAACCCTAGTGCAGCACATGGTTTGGTTTCAGCTAATAAACAAACGAACCCATTTATCATTGGGTCTCAGAACGAGGCCACCGCTGCAACCTTGTTCTGATTCGTACCAGAGTTTGGTGAGCCATTTTGAAGGTCTGCACGTGGCACCTCCTAAGAGGCTGTTGTCATCGTGGACGGTGGAGCATCACAAGCGGGTGGTGGAGGCAGTGACAAAGCTGGGTGGCCTGAGCAAGGCAACCCCGACGGTGGTTCTGAGGCTGATGGATGAGGAGCGCCGGCAGGGCCTCACCGTACGAACACTGAGGCTCCATCTTTCAGGTTTGCGGTATCTACAGAAGAAAACTCAGAAGTCTATTCATGAATGTAGCCAAGGCAAGGCGCTGAGAAATAGGAAAGTCAGTACCAAGTTCAAAAATTTTGTACAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

196

Amino Acids

22.48

Weight (kDa)

10.35

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 304
AccB7I CCANNNNNTGG 1 cut(s) 274
AccII CGCG 1 cut(s) 14
AciI CCGC 4 cut(s) 14, 242, 352, 484
AclWI GGATC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 574
AcvI CACGTG 1 cut(s) 301
AfaI GTAC 4 cut(s) 266, 453, 562, 582
AfiI CCNNNNNNNGG 4 cut(s) 274, 391, 406, 535
AgsI TTSAA 2 cut(s) 290, 571
AluBI AGCT 2 cut(s) 193, 376
AluI AGCT 2 cut(s) 193, 376
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 1 cut(s) 122
AoxI GGCC 3 cut(s) 236, 382, 442
ApeKI GCWGC 2 cut(s) 172, 244
ApoI RAATTY 1 cut(s) 574
AspLEI GCGC 2 cut(s) 435, 541
AspS9I GGNCC 2 cut(s) 76, 442
AsuHPI GGTGA 2 cut(s) 289, 439
AvaII GGWCC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 304
BbrPI CACGTG 1 cut(s) 301
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 2 cut(s) 184, 231
BccI CCATC 3 cut(s) 11, 415, 477
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 491
BfoI RGCGCY 2 cut(s) 436, 542
BglI GCCNNNNNGGC 1 cut(s) 441
BisI GCNGC 2 cut(s) 173, 245
BlsI GCNGC 2 cut(s) 174, 246
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 2 cut(s) 76, 442
BmiI GGNNCC 2 cut(s) 306, 467
BmsI GCATC 1 cut(s) 352
BpmI CTGGAG 1 cut(s) 65
Bpu10I CCTNAGC 1 cut(s) 386
BsaAI YACGTR 1 cut(s) 301
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 110, 529
BsaXI ACNNNNNCTCC 2 cut(s) 450, 480
Bsc4I CCNNNNNNNGG 4 cut(s) 274, 391, 406, 535
Bse118I RCCGGY 1 cut(s) 435
BseDI CCNNGG 2 cut(s) 110, 529
BseGI GGATG 3 cut(s) 10, 22, 430
BseLI CCNNNNNNNGG 4 cut(s) 274, 391, 406, 535
BseMII CTCAG 6 cut(s) 241, 377, 404, 452, 518, 533
BseRI GAGGAG 1 cut(s) 443
BseXI GCAGC 2 cut(s) 184, 231
BseYI CCCAGC 2 cut(s) 82, 376
BsgI GTGCAG 2 cut(s) 191, 281
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 3 cut(s) 238, 384, 444
BshNI GGYRCC 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 2 cut(s) 79, 436
BsiWI CGTACG 1 cut(s) 451
BslI CCNNNNNNNGG 4 cut(s) 274, 391, 406, 535
BsmAI GTCTC 1 cut(s) 230
BsnI GGCC 3 cut(s) 238, 384, 444
Bso31I GGTCTC 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 51
Bsp1407I TGTACA 1 cut(s) 580
Bsp143I GATC 1 cut(s) 114
BspACI CCGC 4 cut(s) 14, 242, 352, 484
BspANI GGCC 3 cut(s) 238, 384, 444
BspCNI CTCAG 6 cut(s) 240, 378, 405, 453, 517, 534
BspFNI CGCG 1 cut(s) 14
BspHI TCATGA 1 cut(s) 517
BspLI GGNNCC 2 cut(s) 306, 467
BspPI GGATC 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 304
BspTNI GGTCTC 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 435
BsrGI TGTACA 1 cut(s) 580
BssAI RCCGGY 1 cut(s) 435
BssECI CCNNGG 2 cut(s) 110, 529
BssMI GATC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 529
Bst4CI ACNGT 3 cut(s) 337, 406, 451
BstAUI TGTACA 1 cut(s) 580
BstBAI YACGTR 1 cut(s) 301
BstC8I GCNNGC 1 cut(s) 437
BstDEI CTNAG 7 cut(s) 227, 312, 386, 413, 461, 504, 542
BstENI CCTNNNNNAGG 1 cut(s) 389
BstF5I GGATG 3 cut(s) 10, 22, 430
BstFNI CGCG 1 cut(s) 14
BstH2I RGCGCY 2 cut(s) 436, 542
BstHHI GCGC 2 cut(s) 435, 541
BstKTI GATC 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 1 cut(s) 114
BstMWI GCNNNNNNNGC 3 cut(s) 244, 349, 441
BstSFI CTRYAG 1 cut(s) 491
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 184, 231
BstXI CCANNNNNNTGG 1 cut(s) 36
BsuRI GGCC 3 cut(s) 238, 384, 444
BtsCI GGATG 3 cut(s) 10, 22, 430
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 2 cut(s) 372, 458
Cac8I GCNNGC 1 cut(s) 437
CciI TCATGA 1 cut(s) 517
CfoI GCGC 2 cut(s) 435, 541
Cfr10I RCCGGY 1 cut(s) 435
Cfr13I GGNCC 2 cut(s) 76, 442
CseI GACGC 2 cut(s) 20, 49
Csp6I GTAC 4 cut(s) 265, 452, 561, 581
CviAII CATG 2 cut(s) 178, 518
CviQI GTAC 4 cut(s) 265, 452, 561, 581
DdeI CTNAG 7 cut(s) 227, 312, 386, 413, 461, 504, 542
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 529
Eco31I GGTCTC 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 76
Eco72I CACGTG 1 cut(s) 301
EcoNI CCTNNNNNAGG 1 cut(s) 389
EcoO109I RGGNCCY 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 529
ErhI CCWWGG 1 cut(s) 529
FaeI CATG 2 cut(s) 181, 521
FaiI YATR 3 cut(s) 71, 179, 519
FatI CATG 2 cut(s) 177, 517
FauI CCCGC 1 cut(s) 345
Fnu4HI GCNGC 2 cut(s) 173, 245
FokI GGATG 3 cut(s) 17, 29, 437
Fsp4HI GCNGC 2 cut(s) 173, 245
FspBI CTAG 1 cut(s) 167
GlaI GCGC 2 cut(s) 434, 540
GluI GCNGC 2 cut(s) 173, 245
GsaI CCCAGC 2 cut(s) 86, 380
GsuI CTGGAG 1 cut(s) 65
HaeII RGCGCY 2 cut(s) 436, 542
HaeIII GGCC 3 cut(s) 238, 384, 444
HapII CCGG 2 cut(s) 79, 436
HgaI GACGC 2 cut(s) 20, 49
HhaI GCGC 2 cut(s) 435, 541
Hin1II CATG 2 cut(s) 181, 521
Hin6I GCGC 2 cut(s) 433, 539
HinP1I GCGC 2 cut(s) 433, 539
HinfI GANTC 1 cut(s) 260
HpaII CCGG 2 cut(s) 79, 436
HphI GGTGA 2 cut(s) 289, 439
Hpy166II GTNNAC 4 cut(s) 10, 39, 67, 333
Hpy188I TCNGA 5 cut(s) 104, 230, 259, 414, 507
Hpy188III TCNNGA 2 cut(s) 23, 518
Hpy8I GTNNAC 4 cut(s) 10, 39, 67, 333
Hpy99I CGWCG 1 cut(s) 406
HpyAV CCTTC 2 cut(s) 139, 284
HpyCH4III ACNGT 3 cut(s) 337, 406, 451
HpyCH4IV ACGT 2 cut(s) 59, 300
HpyCH4V TGCA 3 cut(s) 172, 247, 298
HpyF10VI GCNNNNNNNGC 3 cut(s) 244, 349, 441
HpyF3I CTNAG 7 cut(s) 227, 312, 386, 413, 461, 504, 542
HpySE526I ACGT 2 cut(s) 59, 300
Hsp92II CATG 2 cut(s) 181, 521
HspAI GCGC 2 cut(s) 433, 539
KroI GCCGGC 1 cut(s) 435
KroNI GCCGGC 1 cut(s) 437
Kzo9I GATC 1 cut(s) 114
LmnI GCTCC 4 cut(s) 46, 340, 430, 471
Lsp1109I GCAGC 2 cut(s) 184, 231
LweI GCATC 1 cut(s) 352
MaeI CTAG 1 cut(s) 167
MaeII ACGT 2 cut(s) 59, 300
MaeIII GTNAC 1 cut(s) 367
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 1 cut(s) 508
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 1 cut(s) 574
MnlI CCTC 9 cut(s) 105, 228, 309, 318, 355, 408, 421, 455, 456
MroNI GCCGGC 1 cut(s) 435
MseI TTAA 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 244
MspI CCGG 2 cut(s) 79, 436
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 3 cut(s) 244, 349, 441
NaeI GCCGGC 1 cut(s) 437
NdeII GATC 1 cut(s) 114
NgoMIV GCCGGC 1 cut(s) 435
NlaIII CATG 2 cut(s) 181, 521
NlaIV GGNNCC 2 cut(s) 306, 467
NmuCI GTSAC 1 cut(s) 367
PagI TCATGA 1 cut(s) 517
PdiI GCCGGC 1 cut(s) 437
PfeI GAWTC 1 cut(s) 260
Pfl23II CGTACG 1 cut(s) 451
PflMI CCANNNNNTGG 1 cut(s) 274
PkrI GCNGC 2 cut(s) 174, 246
PmaCI CACGTG 1 cut(s) 301
PmlI CACGTG 1 cut(s) 301
Ppu21I YACGTR 1 cut(s) 301
PspCI CACGTG 1 cut(s) 301
PspFI CCCAGC 2 cut(s) 82, 376
PspLI CGTACG 1 cut(s) 451
PspN4I GGNNCC 2 cut(s) 306, 467
PspPI GGNCC 2 cut(s) 76, 442
RsaI GTAC 4 cut(s) 266, 453, 562, 582
RsaNI GTAC 4 cut(s) 265, 452, 561, 581
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 2 cut(s) 173, 245
Sau3AI GATC 1 cut(s) 114
Sau96I GGNCC 2 cut(s) 76, 442
SduI GDGCHC 1 cut(s) 51
SetI ASST 8 cut(s) 62, 195, 253, 295, 303, 310, 378, 481
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 1 cut(s) 491
SinI GGWCC 1 cut(s) 76
Sse9I AATT 1 cut(s) 574
SsiI CCGC 4 cut(s) 14, 242, 352, 484
SspMI CTAG 1 cut(s) 167
StyI CCWWGG 1 cut(s) 529
TaaI ACNGT 3 cut(s) 337, 406, 451
TaiI ACGT 2 cut(s) 62, 303
TasI AATT 1 cut(s) 574
TatI WGTACW 1 cut(s) 580
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 2 cut(s) 372, 465
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 2 cut(s) 172, 244
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 3 cut(s) 149, 506, 534
TspRI CASTG 2 cut(s) 372, 465
Van91I CCANNNNNTGG 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 76
XagI CCTNNNNNAGG 1 cut(s) 389
XapI RAATTY 1 cut(s) 574
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.