Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000751

Physical Location & Seq

Genomic Coordinates Reverse (-)

7441481 .. 7442596

Gene Structure 1116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG100400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTCTCGTTTCGGGGTCGAAGGAGATCGGCGAGCAACACCTTCACCAAGAACGTTCGAGTGGACGTTGGAGCATCACAGGAAGTGTGTTGACACCTTCATCTTTCTGGGCGGTGATAAAGAAAAAGTTGGAGTACACAATGCCCTAAAGGCGGAGCTGTTGAGCCTGGCAGGGTGTTGTTGCAGAAGCTCTTACCTTGACTTCCACATTTCCTTGCTTGGTCTACTACAGAAAAGCTCCGAAGCATTATTTTCCTCTAACAAAGTCACCCTTGAAAGCCTATACGTGGCACCTCAAAAGATGTCATCGTTATGGACACTGGAGCATCACCGGCGGGTCGTGGAGGCGGTGATACAGCTCGGTGGGCTTAGCAGTAGCAAGACTACCCCAAAGGCCGTGCTGAAGCTGATGGATGAGGAGGACCGCCGCCAAGGCCTCACCACAAAGATGATAGCGCACCACCTTTTGGGGCTGTATCATTTGCAGAAGGAAACTCAACGGCCCCAGGGTCGTAGATTCGTAGTGTCTCTGTTCAGAGTTACAGTTACATATGGTGGTCCAGATAGAGCATATTACAGTTCCACAAGAACCACAAGGGCAGGCAACGATGGTGTTATGATTGAGGAGACCAAAGAAGCAGATAGGACAACTGGTCAAGCAACACGAGATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Mlf1IP

Protein Analysis

224

Amino Acids

25.2

Weight (kDa)

9.32

Isoelectric Point (pI)

49.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13881 FvH4_7g21401 FvH4_7g21460 FvH4_7g21461
prunus_persica	Prupe.2G229300_v2.0.a1 Prupe.2G229300_v2.0.a1
rosa_laevigata	RLG00000004659 RLG00000008621 RLG00000013452 RLG00000013453 RLG00000013454 RLG00000023300 RLG00000027397 RLG00000027398 RLG00000027399
rosa_multiflora	Rmu_co8024742.1_g000001 Rmu_sc0000058.1_g000004 Rmu_sc0000271.1_g000010 Rmu_sc0002093.1_g000035 Rmu_sc0003642.1_g000002 Rmu_sc0004311.1_g000014 Rmu_sc0004311.1_g000015 Rmu_sc0004311.1_g000016 Rmu_sc0004790.1_g000005 Rmu_sc0010532.1_g000005 Rmu_sc0018344.1_g000004 Rmu_sc0034955.1_g000002 Rmu_sc0034955.1_g000003
rosa_roxburghii	Rroxscaffold_3G00230670 Rroxscaffold_3G00266020 Rroxscaffold_4G00290880 Rroxscaffold_4G00290890 Rroxscaffold_4G00290900 Rroxscaffold_6G00398590 Rroxscaffold_7G00193140 Rroxscaffold_7G00193160
rosa_rugosa	Rorug01G0324200 Rorug01G0324300 Rorug01G0324300 Rorug03G0204900 Rorug05G0541000 Rorug06G0094500 Rorug06G0094600 Rorug06G0494100 Rorug07G0256300
rosa_samantha	Rh1AG332900 Rh1AG333000 Rh1AG333100 Rh1BG293800 Rh1BG293900 Rh1BG294000 Rh1CG310700 Rh1DG326200 Rh1DG326300 Rh1DG326400 Rh3AG253000 Rh3BG289700 Rh3CG287000 Rh3DG282600 Rh6AG206700 Rh6AG206800 Rh6AG207000 Rh6BG209700 Rh6CG212400 Rh6DG202800 Rh7AG098700 Rh7BG100400 Rh7BG386400 Rh7CG101900 Rh7DG100500
rosa_wichuraiana	Rw1G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	289
AccB7I	CCANNNNNTGG	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	223
AciI	CCGC	6 cut(s)	111, 152, 334, 347, 424, 427
AclI	AACGTT	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	422
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	3 cut(s)	151, 286, 466
AgsI	TTSAA	1 cut(s)	275
AhdI	GACNNNNNGTC	1 cut(s)	651
AjnI	CCWGG	2 cut(s)	165, 504
AluBI	AGCT	5 cut(s)	157, 189, 237, 358, 406
AluI	AGCT	5 cut(s)	157, 189, 237, 358, 406
Alw26I	GTCTC	3 cut(s)	9, 531, 620
AoxI	GGCC	3 cut(s)	393, 433, 500
AspLEI	GCGC	1 cut(s)	457
AspS9I	GGNCC	3 cut(s)	421, 501, 557
AsuHPI	GGTGA	6 cut(s)	36, 125, 259, 320, 361, 430
AvaII	GGWCC	2 cut(s)	421, 557
BanI	GGYRCC	1 cut(s)	289
BauI	CACGAG	1 cut(s)	663
BccI	CCATC	2 cut(s)	403, 602
BceAI	ACGGC	2 cut(s)	380, 515
BciT130I	CCWGG	2 cut(s)	167, 506
BcoDI	GTCTC	3 cut(s)	9, 531, 620
BfmI	CTRYAG	1 cut(s)	227
BglI	GCCNNNNNGGC	2 cut(s)	149, 432
BglII	AGATCT	1 cut(s)	667
BisI	GCNGC	1 cut(s)	427
BlpI	GCTNAGC	1 cut(s)	368
BlsI	GCNGC	1 cut(s)	428
Bme1390I	CCNGG	2 cut(s)	167, 506
Bme18I	GGWCC	2 cut(s)	421, 557
BmeRI	GACNNNNNGTC	1 cut(s)	651
BmgT120I	GGNCC	3 cut(s)	421, 501, 557
BmiI	GGNNCC	2 cut(s)	291, 503
BmrFI	CCNGG	2 cut(s)	167, 506
BmsI	GCATC	2 cut(s)	82, 334
BpmI	CTGGAG	1 cut(s)	341
Bpu1102I	GCTNAGC	1 cut(s)	368
BsaAI	YACGTR	1 cut(s)	286
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	3 cut(s)	430, 504, 505
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 286, 466
Bse118I	RCCGGY	1 cut(s)	330
Bse1I	ACTGG	2 cut(s)	324, 655
BseBI	CCWGG	2 cut(s)	167, 506
BseDI	CCNNGG	3 cut(s)	430, 504, 505
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	3 cut(s)	151, 286, 466
BseNI	ACTGG	2 cut(s)	324, 655
BseRI	GAGGAG	2 cut(s)	431, 638
BshFI	GGCC	3 cut(s)	395, 435, 502
BshNI	GGYRCC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	331
BslI	CCNNNNNNNGG	3 cut(s)	151, 286, 466
BsmAI	GTCTC	3 cut(s)	9, 531, 620
BsnI	GGCC	3 cut(s)	395, 435, 502
Bso31I	GGTCTC	1 cut(s)	620
Bsp143I	GATC	2 cut(s)	25, 667
Bsp1720I	GCTNAGC	1 cut(s)	368
BspACI	CCGC	6 cut(s)	111, 152, 334, 347, 424, 427
BspANI	GGCC	3 cut(s)	395, 435, 502
BspLI	GGNNCC	2 cut(s)	291, 503
BspT107I	GGYRCC	1 cut(s)	289
BspTNI	GGTCTC	1 cut(s)	620
BsrFI	RCCGGY	1 cut(s)	330
BsrI	ACTGG	2 cut(s)	324, 655
BssAI	RCCGGY	1 cut(s)	330
BssECI	CCNNGG	3 cut(s)	430, 504, 505
BssMI	GATC	2 cut(s)	25, 667
BssSI	CACGAG	1 cut(s)	663
BssT1I	CCWWGG	1 cut(s)	430
Bst2BI	CACGAG	1 cut(s)	663
Bst2UI	CCWGG	2 cut(s)	167, 506
Bst4CI	ACNGT	2 cut(s)	544, 578
BstBAI	YACGTR	1 cut(s)	286
BstC8I	GCNNGC	2 cut(s)	33, 601
BstDEI	CTNAG	1 cut(s)	368
BstF5I	GGATG	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	2 cut(s)	28, 670
BstMAI	GTCTC	3 cut(s)	9, 531, 620
BstMBI	GATC	2 cut(s)	25, 667
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 331, 364, 432
BstNI	CCWGG	2 cut(s)	167, 506
BstSCI	CCNGG	2 cut(s)	165, 504
BstSFI	CTRYAG	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	667
BstYI	RGATCY	1 cut(s)	667
BsuRI	GGCC	3 cut(s)	395, 435, 502
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	317
Cac8I	GCNNGC	2 cut(s)	33, 601
CfoI	GCGC	1 cut(s)	457
Cfr10I	RCCGGY	1 cut(s)	330
Cfr13I	GGNCC	3 cut(s)	421, 501, 557
Csp6I	GTAC	1 cut(s)	134
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	368
DpnI	GATC	2 cut(s)	27, 669
DpnII	GATC	2 cut(s)	25, 667
DriI	GACNNNNNGTC	1 cut(s)	651
Eam1105I	GACNNNNNGTC	1 cut(s)	651
EciI	GGCGGA	1 cut(s)	167
Eco130I	CCWWGG	1 cut(s)	430
Eco147I	AGGCCT	1 cut(s)	435
Eco31I	GGTCTC	1 cut(s)	620
Eco47I	GGWCC	2 cut(s)	421, 557
Eco57I	CTGAAG	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	165, 504
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FaiI	YATR	6 cut(s)	283, 313, 550, 552, 571, 617
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FauI	CCCGC	1 cut(s)	327
FauNDI	CATATG	1 cut(s)	550
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	427
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	1 cut(s)	427
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	1 cut(s)	427
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	3 cut(s)	395, 435, 502
HapII	CCGG	1 cut(s)	331
HhaI	GCGC	1 cut(s)	457
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	516
HpaII	CCGG	1 cut(s)	331
HphI	GGTGA	6 cut(s)	36, 125, 259, 320, 361, 430
Hpy166II	GTNNAC	4 cut(s)	63, 91, 136, 224
Hpy188I	TCNGA	2 cut(s)	241, 536
Hpy188III	TCNNGA	1 cut(s)	560
Hpy8I	GTNNAC	4 cut(s)	63, 91, 136, 224
HpyAV	CCTTC	4 cut(s)	14, 51, 106, 481
HpyCH4III	ACNGT	2 cut(s)	544, 578
HpyCH4IV	ACGT	3 cut(s)	53, 65, 285
HpyCH4V	TGCA	2 cut(s)	183, 484
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 331, 364, 432
HpyF3I	CTNAG	1 cut(s)	368
HpySE526I	ACGT	3 cut(s)	53, 65, 285
HspAI	GCGC	1 cut(s)	455
Kzo9I	GATC	2 cut(s)	25, 667
LmnI	GCTCC	4 cut(s)	70, 154, 242, 322
LweI	GCATC	2 cut(s)	82, 334
MaeII	ACGT	3 cut(s)	53, 65, 285
MaeIII	GTNAC	3 cut(s)	265, 538, 544
MalI	GATC	2 cut(s)	27, 669
MboI	GATC	2 cut(s)	25, 667
MflI	RGATCY	1 cut(s)	667
MmeI	TCCRAC	2 cut(s)	48, 109
MnlI	CCTC	7 cut(s)	265, 303, 337, 409, 412, 446, 616
MslI	CAYNNNNRTG	2 cut(s)	310, 446
MspI	CCGG	1 cut(s)	331
MspR9I	CCNGG	2 cut(s)	167, 506
MvaI	CCWGG	2 cut(s)	167, 506
MwoI	GCNNNNNNNGC	4 cut(s)	149, 331, 364, 432
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	2 cut(s)	25, 667
NlaIV	GGNNCC	2 cut(s)	291, 503
NmuCI	GTSAC	1 cut(s)	265
PasI	CCCWGGG	1 cut(s)	505
PceI	AGGCCT	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	516
PflMI	CCANNNNNTGG	1 cut(s)	466
PkrI	GCNGC	1 cut(s)	428
Ppu21I	YACGTR	1 cut(s)	286
Psp1406I	AACGTT	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	165, 504
PspGI	CCWGG	2 cut(s)	165, 504
PspN4I	GGNNCC	2 cut(s)	291, 503
PspPI	GGNCC	3 cut(s)	421, 501, 557
PsuI	RGATCY	1 cut(s)	667
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
RseI	CAYNNNNRTG	2 cut(s)	310, 446
SatI	GCNGC	1 cut(s)	427
Sau3AI	GATC	2 cut(s)	25, 667
Sau96I	GGNCC	3 cut(s)	421, 501, 557
ScrFI	CCNGG	2 cut(s)	167, 506
SfaNI	GCATC	2 cut(s)	82, 334
SfcI	CTRYAG	1 cut(s)	227
SgrAI	CRCCGGYG	1 cut(s)	330
SinI	GGWCC	2 cut(s)	421, 557
SmiMI	CAYNNNNRTG	2 cut(s)	310, 446
SseBI	AGGCCT	1 cut(s)	435
SsiI	CCGC	6 cut(s)	111, 152, 334, 347, 424, 427
StuI	AGGCCT	1 cut(s)	435
StyD4I	CCNGG	2 cut(s)	165, 504
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	2 cut(s)	544, 578
TaiI	ACGT	3 cut(s)	56, 68, 288
TaqI	TCGA	2 cut(s)	18, 57
TatI	WGTACW	1 cut(s)	133
TauI	GCSGC	1 cut(s)	429
TfiI	GAWTC	1 cut(s)	516
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	88
TspRI	CASTG	1 cut(s)	324
Van91I	CCANNNNNTGG	1 cut(s)	466
VpaK11BI	GGWCC	2 cut(s)	421, 557
XmiI	GTMKAC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.