Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002093.1

Orthogroup ID

OG0000751

Physical Location & Seq

Genomic Coordinates Forward (+)

142885 .. 143586

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002093.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atggcgttgcagaagcaaacaatttctgaatacatggtccaagttggagtcatgggaaatcagaaaaacgttccacaaacaatagagtggacaatagagcaccacaagctcttcgtggacctgctgctccagtccggcggtttcgagaaagttcgcgcgttcatactaaagaggatgatgaagatagtgaagggtcttacatggtcagctgcgttagaccattctcgccagttggaacaactacagaagcaaactcaatcagttctattacgtcgtccaccccgaaaaccatcttgtaaactcagtgttttggtggacgatttggtgagagacttggagggtctaatcatggaacataagctgtcaacgtggacactcgagcatcacaagcgtgtggtggatgctttggcaaaggtgggtggctttgacatggcaaaccccatggagaagacggcggttagggttttgagacttatggaagaagagcgtcgccagggtctcaccgcacggatggtaacgaagcatctgatagggttgcgctatttacagaggagaactcaggaggccattgttaaagcggcagagaataaagctaaacatggctgcagcgtcaggaggcccaaaaaagtgaaggtgggaagaagaaaaaaaaataatcgaccagcagagtgtcatggcctttcgaatcatacgctggcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

26.77

Weight (kDa)

10.38

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13881 FvH4_7g21401 FvH4_7g21460 FvH4_7g21461
prunus_persica	Prupe.2G229300_v2.0.a1 Prupe.2G229300_v2.0.a1
rosa_laevigata	RLG00000004659 RLG00000008621 RLG00000013452 RLG00000013453 RLG00000013454 RLG00000023300 RLG00000027397 RLG00000027398 RLG00000027399
rosa_multiflora	Rmu_co8024742.1_g000001 Rmu_sc0000058.1_g000004 Rmu_sc0000271.1_g000010 Rmu_sc0002093.1_g000035 Rmu_sc0003642.1_g000002 Rmu_sc0004311.1_g000014 Rmu_sc0004311.1_g000015 Rmu_sc0004311.1_g000016 Rmu_sc0004790.1_g000005 Rmu_sc0010532.1_g000005 Rmu_sc0018344.1_g000004 Rmu_sc0034955.1_g000002 Rmu_sc0034955.1_g000003
rosa_roxburghii	Rroxscaffold_3G00230670 Rroxscaffold_3G00266020 Rroxscaffold_4G00290880 Rroxscaffold_4G00290890 Rroxscaffold_4G00290900 Rroxscaffold_6G00398590 Rroxscaffold_7G00193140 Rroxscaffold_7G00193160
rosa_rugosa	Rorug01G0324200 Rorug01G0324300 Rorug01G0324300 Rorug03G0204900 Rorug05G0541000 Rorug06G0094500 Rorug06G0094600 Rorug06G0494100 Rorug07G0256300
rosa_samantha	Rh1AG332900 Rh1AG333000 Rh1AG333100 Rh1BG293800 Rh1BG293900 Rh1BG294000 Rh1CG310700 Rh1DG326200 Rh1DG326300 Rh1DG326400 Rh3AG253000 Rh3BG289700 Rh3CG287000 Rh3DG282600 Rh6AG206700 Rh6AG206800 Rh6AG207000 Rh6BG209700 Rh6CG212400 Rh6DG202800 Rh7AG098700 Rh7BG100400 Rh7BG386400 Rh7CG101900 Rh7DG100500
rosa_wichuraiana	Rw1G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	129
AccII	CGCG	2 cut(s)	156, 158
AciI	CCGC	4 cut(s)	138, 455, 504, 578
AclI	AACGTT	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	492
AleI	CACNNNNGTG	1 cut(s)	390
AluBI	AGCT	4 cut(s)	109, 209, 361, 593
AluI	AGCT	4 cut(s)	109, 209, 361, 593
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	3 cut(s)	324, 463, 503
Ama87I	CYCGRG	1 cut(s)	377
AoxI	GGCC	3 cut(s)	564, 617, 676
ApeKI	GCWGC	4 cut(s)	124, 209, 603, 606
AspLEI	GCGC	2 cut(s)	158, 540
AspS9I	GGNCC	3 cut(s)	37, 118, 618
AsuHPI	GGTGA	2 cut(s)	337, 493
AsuII	TTCGAA	1 cut(s)	683
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	2 cut(s)	37, 118
BbsI	GAAGAC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	4 cut(s)	111, 196, 590, 618
BccI	CCATC	2 cut(s)	298, 505
BceAI	ACGGC	1 cut(s)	468
BciT130I	CCWGG	1 cut(s)	494
BcoDI	GTCTC	3 cut(s)	324, 463, 503
BfmI	CTRYAG	2 cut(s)	242, 604
BfuAI	ACCTGC	1 cut(s)	129
BisI	GCNGC	5 cut(s)	125, 210, 579, 604, 607
BlsI	GCNGC	5 cut(s)	126, 211, 580, 605, 608
Bme1390I	CCNGG	1 cut(s)	494
Bme18I	GGWCC	2 cut(s)	37, 118
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	3 cut(s)	37, 118, 618
BmrFI	CCNGG	1 cut(s)	494
BmsI	GCATC	3 cut(s)	391, 391, 532
BpiI	GAAGAC	1 cut(s)	455
BplI	GAGNNNNNCTC	2 cut(s)	541, 573
BpmI	CTGGAG	1 cut(s)	113
Bpu14I	TTCGAA	1 cut(s)	683
BsaI	GGTCTC	1 cut(s)	503
BsaJI	CCNNGG	2 cut(s)	441, 493
Bse1I	ACTGG	2 cut(s)	130, 229
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	2 cut(s)	441, 493
BseGI	GGATG	3 cut(s)	180, 406, 516
BseMII	CTCAG	2 cut(s)	316, 572
BseNI	ACTGG	2 cut(s)	130, 229
BseRI	GAGGAG	1 cut(s)	565
BseXI	GCAGC	4 cut(s)	111, 196, 590, 618
Bsh1236I	CGCG	2 cut(s)	156, 158
BshFI	GGCC	3 cut(s)	566, 619, 678
BsiHKAI	GWGCWC	1 cut(s)	102
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	1 cut(s)	135
BsmAI	GTCTC	3 cut(s)	324, 463, 503
BsnI	GGCC	3 cut(s)	566, 619, 678
Bso31I	GGTCTC	1 cut(s)	503
BsoBI	CYCGRG	1 cut(s)	377
Bsp119I	TTCGAA	1 cut(s)	683
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp19I	CCATGG	1 cut(s)	441
BspACI	CCGC	4 cut(s)	138, 455, 504, 578
BspANI	GGCC	3 cut(s)	566, 619, 678
BspCNI	CTCAG	2 cut(s)	315, 571
BspFNI	CGCG	2 cut(s)	156, 158
BspMAI	CTGCAG	1 cut(s)	608
BspMI	ACCTGC	1 cut(s)	129
BspQI	GCTCTTC	2 cut(s)	116, 477
BspT104I	TTCGAA	1 cut(s)	683
BspTNI	GGTCTC	1 cut(s)	503
BsrI	ACTGG	2 cut(s)	130, 229
BssECI	CCNNGG	2 cut(s)	441, 493
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	494
Bst6I	CTCTTC	2 cut(s)	116, 477
BstBI	TTCGAA	1 cut(s)	683
BstC8I	GCNNGC	1 cut(s)	696
BstDEI	CTNAG	2 cut(s)	302, 558
BstDSI	CCRYGG	1 cut(s)	441
BstF5I	GGATG	3 cut(s)	180, 406, 516
BstFNI	CGCG	2 cut(s)	156, 158
BstHHI	GCGC	2 cut(s)	158, 540
BstMAI	GTCTC	3 cut(s)	324, 463, 503
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 388
BstNI	CCWGG	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	492
BstSFI	CTRYAG	2 cut(s)	242, 604
BstUI	CGCG	2 cut(s)	156, 158
BstV1I	GCAGC	4 cut(s)	111, 196, 590, 618
BstV2I	GAAGAC	1 cut(s)	455
BsuRI	GGCC	3 cut(s)	566, 619, 678
BtgI	CCRYGG	1 cut(s)	441
BtsCI	GGATG	3 cut(s)	180, 406, 516
BtsIMutI	CAGTG	1 cut(s)	310
BveI	ACCTGC	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	696
CfoI	GCGC	2 cut(s)	158, 540
Cfr13I	GGNCC	3 cut(s)	37, 118, 618
CseI	GACGC	2 cut(s)	476, 598
CviAII	CATG	8 cut(s)	34, 52, 201, 349, 430, 442, 599, 674
CviJI	RGCY	9 cut(s)	109, 209, 361, 423, 566, 593, 603, 619, 678
CviKI_1	RGCY	9 cut(s)	109, 209, 361, 423, 566, 593, 603, 619, 678
DdeI	CTNAG	2 cut(s)	302, 558
Eam1104I	CTCTTC	2 cut(s)	116, 477
EarI	CTCTTC	2 cut(s)	116, 477
Eco130I	CCWWGG	1 cut(s)	441
Eco31I	GGTCTC	1 cut(s)	503
Eco47I	GGWCC	2 cut(s)	37, 118
Eco88I	CYCGRG	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	8 cut(s)	37, 55, 204, 352, 433, 445, 602, 677
FatI	CATG	8 cut(s)	33, 51, 200, 348, 429, 441, 598, 673
Fnu4HI	GCNGC	5 cut(s)	125, 210, 579, 604, 607
FokI	GGATG	3 cut(s)	187, 413, 523
Fsp4HI	GCNGC	5 cut(s)	125, 210, 579, 604, 607
GlaI	GCGC	2 cut(s)	157, 539
GluI	GCNGC	5 cut(s)	125, 210, 579, 604, 607
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	3 cut(s)	566, 619, 678
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	2 cut(s)	476, 598
HhaI	GCGC	2 cut(s)	158, 540
Hin1II	CATG	8 cut(s)	37, 55, 204, 352, 433, 445, 602, 677
Hin6I	GCGC	2 cut(s)	156, 538
HinP1I	GCGC	2 cut(s)	156, 538
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	2 cut(s)	48, 685
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	2 cut(s)	337, 493
Hpy166II	GTNNAC	7 cut(s)	90, 118, 278, 299, 316, 366, 372
Hpy188I	TCNGA	3 cut(s)	28, 63, 528
Hpy188III	TCNNGA	3 cut(s)	145, 560, 613
Hpy8I	GTNNAC	7 cut(s)	90, 118, 278, 299, 316, 366, 372
Hpy99I	CGWCG	2 cut(s)	276, 492
HpyAV	CCTTC	2 cut(s)	184, 625
HpyCH4IV	ACGT	3 cut(s)	69, 271, 368
HpyCH4V	TGCA	2 cut(s)	10, 606
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 388
HpyF3I	CTNAG	2 cut(s)	302, 558
HpySE526I	ACGT	3 cut(s)	69, 271, 368
Hsp92II	CATG	8 cut(s)	37, 55, 204, 352, 433, 445, 602, 677
HspAI	GCGC	2 cut(s)	156, 538
LguI	GCTCTTC	2 cut(s)	116, 477
LmnI	GCTCC	1 cut(s)	132
Lsp1109I	GCAGC	4 cut(s)	111, 196, 590, 618
LweI	GCATC	3 cut(s)	391, 391, 532
MaeII	ACGT	3 cut(s)	69, 271, 368
MaeIII	GTNAC	1 cut(s)	514
MboII	GAAGA	7 cut(s)	103, 193, 460, 491, 494, 651, 654
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	57
MmeI	TCCRAC	2 cut(s)	25, 213
MnlI	CCTC	5 cut(s)	165, 331, 543, 556, 609
MseI	TTAA	1 cut(s)	573
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	494
MvnI	CGCG	2 cut(s)	156, 158
MwoI	GCNNNNNNNGC	2 cut(s)	106, 388
NcoI	CCATGG	1 cut(s)	441
NlaIII	CATG	8 cut(s)	37, 55, 204, 352, 433, 445, 602, 677
NspV	TTCGAA	1 cut(s)	683
OliI	CACNNNNGTG	1 cut(s)	390
PaeR7I	CTCGAG	1 cut(s)	377
PciSI	GCTCTTC	2 cut(s)	116, 477
PcsI	WCGNNNNNNNCGW	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	685
PkrI	GCNGC	5 cut(s)	126, 211, 580, 605, 608
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
Psp1406I	AACGTT	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PspPI	GGNCC	3 cut(s)	37, 118, 618
PspXI	VCTCGAGB	1 cut(s)	377
PstI	CTGCAG	1 cut(s)	608
PvuII	CAGCTG	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	390
SapI	GCTCTTC	2 cut(s)	116, 477
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	5 cut(s)	125, 210, 579, 604, 607
Sau96I	GGNCC	3 cut(s)	37, 118, 618
SchI	GAGTC	1 cut(s)	57
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	1 cut(s)	102
SfaNI	GCATC	3 cut(s)	391, 391, 532
SfcI	CTRYAG	2 cut(s)	242, 604
Sfr274I	CTCGAG	1 cut(s)	377
SfuI	TTCGAA	1 cut(s)	683
SinI	GGWCC	2 cut(s)	37, 118
SlaI	CTCGAG	1 cut(s)	377
SmiMI	CAYNNNNRTG	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	4 cut(s)	138, 455, 504, 578
StyD4I	CCNGG	1 cut(s)	492
StyI	CCWWGG	1 cut(s)	441
TaiI	ACGT	3 cut(s)	72, 274, 371
TaqI	TCGA	4 cut(s)	144, 378, 658, 683
TasI	AATT	1 cut(s)	21
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	1 cut(s)	685
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TscAI	CASTG	1 cut(s)	310
TseI	GCWGC	4 cut(s)	124, 209, 603, 606
TspDTI	ATGAA	2 cut(s)	151, 194
TspGWI	ACGGA	1 cut(s)	523
TspRI	CASTG	1 cut(s)	310
VpaK11BI	GGWCC	2 cut(s)	37, 118
XhoI	CTCGAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.