Rw1G029560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000751
Physical Location & Seq
Forward (+)
57273492 .. 57274305
814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G029560.1

Sequence Viewer

Length: 780 bp
ATGGAAGTCACCGGCGGAGAAACCAGAAGAGACCCTTTGATCATAGGGTGGACGCTGGAGCACCACAAGCAGTTTTTAGAGTCGGTGGTGCGCAACGGTGGTTTTAACAAACCCTCAATTACTCCAATAGTAGTGGTGGACGTGCTGAACAAGGTGAACGGTCTTCGCCCGTATCCTATTGTGTATCACATGTTCTGGTTCCGAAAATTCCACAAAGAGAATGAATCCCTATTCAAGAAGTTGGCTGAGTTTGATTCTTTGGTCAGAGATTTTGCAGGCCTAGGAGTGGAAGGAGCAAAGTGCTGGTCGTCATGGACAGTAGAGCATTACAAGGAGGTGGTGGAGGCTATTATACAGCTGGGTGGCCTAGGCAACGAAACACCAGCGAAGCTCCTGGAGTTGGTGGACCGCCGCCTTGGCCTCACAGTAGAGATTCTAGAGCACATACTTTCGAGGTTGGAAACTTTGCAGGAAAGAACTCAAGAAGCTACGTATGGCCACGGCGGTCCACTGCGGCCGGGCAGGCAGAGAAGAAAAATAATAAGAGATGAATCTACGAAACTAGCCACTATTCTCAAATCAAAAGTAGATGAAACAATCATGAGCCACCGGCAACTCACAAGAGAACAAAGAATGGAATATTTGGAGGCAAAAGCAAGAGCAACAAGAGCAGAAAGAATGGAATATTGGGTGACAAGAGCAGCAAGAAGAATGGAAAATTTGGTGACAAAAATGGATCATATAAATTTGGGTCGATCCGGAAGTGAATCGAGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

29.91

Weight (kDa)

9.25

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 92
AccIII TCCGGA 1 cut(s) 758
AciI CCGC 5 cut(s) 15, 409, 412, 504, 514
AclWI GGATC 2 cut(s) 744, 750
AcoI YGGCCR 2 cut(s) 496, 515
AcsI RAATTY 3 cut(s) 206, 718, 745
AfiI CCNNNNNNNGG 2 cut(s) 286, 400
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 1 cut(s) 235
AjiI CACGTC 1 cut(s) 142
AjnI CCWGG 1 cut(s) 393
AjuI GAANNNNNNNTTGG 2 cut(s) 670, 702
AluBI AGCT 3 cut(s) 358, 391, 488
AluI AGCT 3 cut(s) 358, 391, 488
Alw21I GWGCWC 2 cut(s) 63, 444
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 2 cut(s) 744, 750
Aor13HI TCCGGA 1 cut(s) 758
AoxI GGCC 5 cut(s) 277, 364, 418, 496, 515
ApeKI GCWGC 1 cut(s) 701
ApoI RAATTY 3 cut(s) 206, 718, 745
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AspA2I CCTAGG 2 cut(s) 280, 367
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 2 cut(s) 406, 506
AsuC2I CCSGG 1 cut(s) 519
AsuHPI GGTGA 3 cut(s) 166, 703, 736
AvaII GGWCC 2 cut(s) 406, 506
AvrII CCTAGG 2 cut(s) 280, 367
BalI TGGCCA 1 cut(s) 498
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 2 cut(s) 63, 444
BbvI GCAGC 1 cut(s) 713
BceAI ACGGC 1 cut(s) 517
BciT130I CCWGG 1 cut(s) 395
BciVI GTATCC 1 cut(s) 183
BclI TGATCA 1 cut(s) 39
BcnI CCSGG 1 cut(s) 519
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 4 cut(s) 281, 368, 437, 563
BfuI GTATCC 1 cut(s) 183
BglI GCCNNNNNGGC 2 cut(s) 417, 523
BisI GCNGC 3 cut(s) 412, 515, 702
BlnI CCTAGG 2 cut(s) 280, 367
BlsI GCNGC 3 cut(s) 413, 516, 703
Bme1390I CCNGG 2 cut(s) 395, 519
Bme18I GGWCC 2 cut(s) 406, 506
BmgBI CACGTC 1 cut(s) 142
BmgT120I GGNCC 2 cut(s) 406, 506
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 2 cut(s) 395, 519
BpiI GAAGAC 1 cut(s) 155
BpmI CTGGAG 2 cut(s) 77, 416
BpuEI CTTGAG 1 cut(s) 465
BpuMI CCSGG 1 cut(s) 519
BsaAI YACGTR 1 cut(s) 492
BsaI GGTCTC 1 cut(s) 24
BsaJI CCNNGG 4 cut(s) 280, 367, 415, 499
BsaWI WCCGGW 1 cut(s) 758
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 400
Bse118I RCCGGY 2 cut(s) 11, 609
BseAI TCCGGA 1 cut(s) 758
BseBI CCWGG 1 cut(s) 395
BseDI CCNNGG 4 cut(s) 280, 367, 415, 499
BseLI CCNNNNNNNGG 2 cut(s) 286, 400
BseMII CTCAG 1 cut(s) 237
BseX3I CGGCCG 1 cut(s) 515
BseXI GCAGC 1 cut(s) 713
BseYI CCCAGC 1 cut(s) 358
Bsh1285I CGRYCG 1 cut(s) 518
BshFI GGCC 5 cut(s) 279, 366, 420, 498, 517
BsiEI CGRYCG 1 cut(s) 518
BsiHKAI GWGCWC 2 cut(s) 63, 444
BsiSI CCGG 4 cut(s) 12, 518, 610, 759
BslI CCNNNNNNNGG 2 cut(s) 286, 400
BsmAI GTCTC 1 cut(s) 24
BsnI GGCC 5 cut(s) 279, 366, 420, 498, 517
Bso31I GGTCTC 1 cut(s) 24
Bsp1286I GDGCHC 2 cut(s) 63, 444
Bsp13I TCCGGA 1 cut(s) 758
Bsp143I GATC 3 cut(s) 39, 736, 755
BspACI CCGC 5 cut(s) 15, 409, 412, 504, 514
BspANI GGCC 5 cut(s) 279, 366, 420, 498, 517
BspCNI CTCAG 1 cut(s) 238
BspEI TCCGGA 1 cut(s) 758
BspHI TCATGA 1 cut(s) 600
BspLI GGNNCC 1 cut(s) 200
BspPI GGATC 2 cut(s) 744, 750
BspTNI GGTCTC 1 cut(s) 24
BsrFI RCCGGY 2 cut(s) 11, 609
BssAI RCCGGY 2 cut(s) 11, 609
BssECI CCNNGG 4 cut(s) 280, 367, 415, 499
BssMI GATC 3 cut(s) 39, 736, 755
BssT1I CCWWGG 3 cut(s) 280, 367, 415
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 4 cut(s) 98, 161, 319, 427
Bst6I CTCTTC 1 cut(s) 22
BstBAI YACGTR 1 cut(s) 492
BstC8I GCNNGC 2 cut(s) 277, 524
BstDEI CTNAG 1 cut(s) 246
BstDSI CCRYGG 1 cut(s) 499
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 3 cut(s) 42, 739, 758
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 3 cut(s) 39, 736, 755
BstMCI CGRYCG 1 cut(s) 518
BstMWI GCNNNNNNNGC 4 cut(s) 67, 417, 523, 668
BstNI CCWGG 1 cut(s) 395
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 2 cut(s) 393, 517
BstSNI TACGTA 1 cut(s) 492
BstV1I GCAGC 1 cut(s) 713
BstV2I GAAGAC 1 cut(s) 155
BstZI CGGCCG 1 cut(s) 515
BsuI GTATCC 1 cut(s) 183
BsuRI GGCC 5 cut(s) 279, 366, 420, 498, 517
BtgI CCRYGG 1 cut(s) 499
BtrI CACGTC 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 509
BtsIMutI CAGTG 1 cut(s) 509
Cac8I GCNNGC 2 cut(s) 277, 524
CciI TCATGA 1 cut(s) 600
CfoI GCGC 1 cut(s) 93
Cfr10I RCCGGY 2 cut(s) 11, 609
Cfr13I GGNCC 2 cut(s) 406, 506
CseI GACGC 1 cut(s) 61
CspCI CAANNNNNGTGG 2 cut(s) 114, 149
CviAII CATG 3 cut(s) 190, 312, 601
DdeI CTNAG 1 cut(s) 246
DpnI GATC 3 cut(s) 41, 738, 757
DpnII GATC 3 cut(s) 39, 736, 755
EaeI YGGCCR 2 cut(s) 496, 515
EagI CGGCCG 1 cut(s) 515
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
EciI GGCGGA 1 cut(s) 30
EclXI CGGCCG 1 cut(s) 515
Eco105I TACGTA 1 cut(s) 492
Eco130I CCWWGG 3 cut(s) 280, 367, 415
Eco147I AGGCCT 1 cut(s) 279
Eco31I GGTCTC 1 cut(s) 24
Eco47I GGWCC 2 cut(s) 406, 506
Eco52I CGGCCG 1 cut(s) 515
EcoRII CCWGG 1 cut(s) 393
EcoT14I CCWWGG 3 cut(s) 280, 367, 415
ErhI CCWWGG 3 cut(s) 280, 367, 415
FaeI CATG 3 cut(s) 193, 315, 604
FaiI YATR 9 cut(s) 44, 191, 313, 353, 446, 495, 602, 741, 743
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FatI CATG 3 cut(s) 189, 311, 600
FbaI TGATCA 1 cut(s) 39
Fnu4HI GCNGC 3 cut(s) 412, 515, 702
Fsp4HI GCNGC 3 cut(s) 412, 515, 702
FspBI CTAG 4 cut(s) 281, 368, 437, 563
FspI TGCGCA 1 cut(s) 92
GlaI GCGC 1 cut(s) 92
GluI GCNGC 3 cut(s) 412, 515, 702
GsaI CCCAGC 1 cut(s) 362
GsuI CTGGAG 2 cut(s) 77, 416
HaeIII GGCC 5 cut(s) 279, 366, 420, 498, 517
HapII CCGG 4 cut(s) 12, 518, 610, 759
HgaI GACGC 1 cut(s) 61
HhaI GCGC 1 cut(s) 93
Hin1II CATG 3 cut(s) 193, 315, 604
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HinfI GANTC 6 cut(s) 80, 224, 254, 433, 551, 767
HpaII CCGG 4 cut(s) 12, 518, 610, 759
HphI GGTGA 3 cut(s) 166, 703, 736
Hpy166II GTNNAC 5 cut(s) 51, 139, 157, 406, 509
Hpy188I TCNGA 2 cut(s) 203, 266
Hpy188III TCNNGA 5 cut(s) 235, 437, 482, 601, 759
Hpy8I GTNNAC 5 cut(s) 51, 139, 157, 406, 509
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 4 cut(s) 98, 161, 319, 427
HpyCH4IV ACGT 2 cut(s) 141, 491
HpyCH4V TGCA 2 cut(s) 275, 469
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 417, 523, 668
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 2 cut(s) 141, 491
Hsp92II CATG 3 cut(s) 193, 315, 604
HspAI GCGC 1 cut(s) 91
Kpn2I TCCGGA 1 cut(s) 758
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 3 cut(s) 39, 736, 755
LmnI GCTCC 3 cut(s) 58, 293, 396
Lsp1109I GCAGC 1 cut(s) 713
MaeI CTAG 4 cut(s) 281, 368, 437, 563
MaeII ACGT 2 cut(s) 141, 491
MaeIII GTNAC 3 cut(s) 7, 691, 724
MalI GATC 3 cut(s) 41, 738, 757
MboI GATC 3 cut(s) 39, 736, 755
MboII GAAGA 4 cut(s) 39, 155, 543, 720
MhlI GDGCHC 2 cut(s) 63, 444
MlsI TGGCCA 1 cut(s) 498
MluCI AATT 4 cut(s) 117, 206, 718, 745
MluNI TGGCCA 1 cut(s) 498
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 6 cut(s) 124, 328, 337, 431, 447, 640
Mox20I TGGCCA 1 cut(s) 498
MroI TCCGGA 1 cut(s) 758
MscI TGGCCA 1 cut(s) 498
MseI TTAA 1 cut(s) 105
Msp20I TGGCCA 1 cut(s) 498
MspA1I CMGCKG 1 cut(s) 358
MspI CCGG 4 cut(s) 12, 518, 610, 759
MspR9I CCNGG 2 cut(s) 395, 519
MvaI CCWGG 1 cut(s) 395
MwoI GCNNNNNNNGC 4 cut(s) 67, 417, 523, 668
NciI CCSGG 1 cut(s) 519
NdeII GATC 3 cut(s) 39, 736, 755
NlaIII CATG 3 cut(s) 193, 315, 604
NlaIV GGNNCC 1 cut(s) 200
NmuCI GTSAC 3 cut(s) 7, 691, 724
NsbI TGCGCA 1 cut(s) 92
NspI RCATGY 1 cut(s) 193
PagI TCATGA 1 cut(s) 600
PceI AGGCCT 1 cut(s) 279
PciI ACATGT 1 cut(s) 189
PfeI GAWTC 5 cut(s) 224, 254, 433, 551, 767
PfoI TCCNGGA 1 cut(s) 393
PkrI GCNGC 3 cut(s) 413, 516, 703
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Ppu21I YACGTR 1 cut(s) 492
PscI ACATGT 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 393
PspFI CCCAGC 1 cut(s) 358
PspGI CCWGG 1 cut(s) 393
PspN4I GGNNCC 1 cut(s) 200
PspPI GGNCC 2 cut(s) 406, 506
PsrI GAACNNNNNNTAC 2 cut(s) 176, 208
PvuII CAGCTG 1 cut(s) 358
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 3 cut(s) 412, 515, 702
Sau3AI GATC 3 cut(s) 39, 736, 755
Sau96I GGNCC 2 cut(s) 406, 506
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 2 cut(s) 395, 519
SduI GDGCHC 2 cut(s) 63, 444
SetI ASST 8 cut(s) 144, 156, 339, 360, 393, 458, 490, 494
SgrAI CRCCGGYG 1 cut(s) 11
SinI GGWCC 2 cut(s) 406, 506
SmlI CTYRAG 1 cut(s) 480
SmoI CTYRAG 1 cut(s) 480
SnaBI TACGTA 1 cut(s) 492
Sse9I AATT 4 cut(s) 117, 206, 718, 745
SseBI AGGCCT 1 cut(s) 279
SsiI CCGC 5 cut(s) 15, 409, 412, 504, 514
SspI AATATT 2 cut(s) 641, 686
SspMI CTAG 4 cut(s) 281, 368, 437, 563
StuI AGGCCT 1 cut(s) 279
StyD4I CCNGG 2 cut(s) 393, 517
StyI CCWWGG 3 cut(s) 280, 367, 415
TaaI ACNGT 4 cut(s) 98, 161, 319, 427
TaiI ACGT 2 cut(s) 144, 494
TaqI TCGA 3 cut(s) 452, 754, 770
TasI AATT 4 cut(s) 117, 206, 718, 745
TauI GCSGC 2 cut(s) 414, 517
TfiI GAWTC 5 cut(s) 224, 254, 433, 551, 767
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 516
TseFI GTSAC 3 cut(s) 7, 691, 724
TseI GCWGC 1 cut(s) 701
Tsp45I GTSAC 3 cut(s) 7, 691, 724
TspDTI ATGAA 3 cut(s) 237, 564, 606
TspRI CASTG 1 cut(s) 516
VpaK11BI GGWCC 2 cut(s) 406, 506
XapI RAATTY 3 cut(s) 206, 718, 745
XbaI TCTAGA 1 cut(s) 436
XceI RCATGY 1 cut(s) 193
XmaJI CCTAGG 2 cut(s) 280, 367
XspI CTAG 4 cut(s) 281, 368, 437, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.