Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8024742.1

Orthogroup ID

OG0000751

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 542

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8024742.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

aagcttttaccttgacttccacatttccttgcttggggtactacagaaaaggtccgaagcattattttcctctaacaaagtcacccttgaaagcctatacgtggcacctaaaaagatgtcatcgccatggacgctggagcatcaccggcgggtcgtggaggcggtgatacaactaggtgggcttagcaatagcaagactaccccaaaggccgtgctgaagttaatggatgaggaggaccgctgccaaggtctcaccacaaagatgatagcacaccaccttctagggttgtatcatttgcaaaaggaaactcagcggctaatggcttttggaatggccggtggtgaagaagaaagagagctatcgcttagggagctccagtaccttgtttttaaagcgttgcccctacaacgaaataacgttctatacacaaatgtaaaagatcctctactccgacagcacctggggctcctcaaacaagttaatatggcacaccgaataagatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007275 GO:0007623 GO:0008150 GO:0009267 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048511 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055063 GO:0055081 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071496 GO:0072505 GO:0080090 GO:0098771 GO:0104004 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

167

Amino Acids

19.19

Weight (kDa)

9.64

Isoelectric Point (pI)

54.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000751)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13881 FvH4_7g21401 FvH4_7g21460 FvH4_7g21461
prunus_persica	Prupe.2G229300_v2.0.a1 Prupe.2G229300_v2.0.a1
rosa_laevigata	RLG00000004659 RLG00000008621 RLG00000013452 RLG00000013453 RLG00000013454 RLG00000023300 RLG00000027397 RLG00000027398 RLG00000027399
rosa_multiflora	Rmu_co8024742.1_g000001 Rmu_sc0000058.1_g000004 Rmu_sc0000271.1_g000010 Rmu_sc0002093.1_g000035 Rmu_sc0003642.1_g000002 Rmu_sc0004311.1_g000014 Rmu_sc0004311.1_g000015 Rmu_sc0004311.1_g000016 Rmu_sc0004790.1_g000005 Rmu_sc0010532.1_g000005 Rmu_sc0018344.1_g000004 Rmu_sc0034955.1_g000002 Rmu_sc0034955.1_g000003
rosa_roxburghii	Rroxscaffold_3G00230670 Rroxscaffold_3G00266020 Rroxscaffold_4G00290880 Rroxscaffold_4G00290890 Rroxscaffold_4G00290900 Rroxscaffold_6G00398590 Rroxscaffold_7G00193140 Rroxscaffold_7G00193160
rosa_rugosa	Rorug01G0324200 Rorug01G0324300 Rorug01G0324300 Rorug03G0204900 Rorug05G0541000 Rorug06G0094500 Rorug06G0094600 Rorug06G0494100 Rorug07G0256300
rosa_samantha	Rh1AG332900 Rh1AG333000 Rh1AG333100 Rh1BG293800 Rh1BG293900 Rh1BG294000 Rh1CG310700 Rh1DG326200 Rh1DG326300 Rh1DG326400 Rh3AG253000 Rh3BG289700 Rh3CG287000 Rh3DG282600 Rh6AG206700 Rh6AG206800 Rh6AG207000 Rh6BG209700 Rh6CG212400 Rh6DG202800 Rh7AG098700 Rh7BG100400 Rh7BG386400 Rh7CG101900 Rh7DG100500
rosa_wichuraiana	Rw1G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	104
AciI	CCGC	4 cut(s)	149, 162, 239, 314
AclI	AACGTT	1 cut(s)	418
AclWI	GGATC	1 cut(s)	435
AcoI	YGGCCR	1 cut(s)	334
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	2 cut(s)	40, 381
AfiI	CCNNNNNNNGG	2 cut(s)	34, 101
AgsI	TTSAA	1 cut(s)	90
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	3 cut(s)	4, 359, 374
AluI	AGCT	3 cut(s)	4, 359, 374
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	435
AlwNI	CAGNNNCTG	1 cut(s)	461
AoxI	GGCC	2 cut(s)	208, 334
ApeKI	GCWGC	1 cut(s)	241
AspS9I	GGNCC	2 cut(s)	52, 236
AsuHPI	GGTGA	5 cut(s)	74, 135, 176, 245, 354
AvaII	GGWCC	2 cut(s)	52, 236
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	2 cut(s)	376, 469
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	228
BceAI	ACGGC	1 cut(s)	195
BciT130I	CCWGG	1 cut(s)	462
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	2 cut(s)	174, 282
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	2 cut(s)	242, 315
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	2 cut(s)	243, 316
Bme1390I	CCNGG	1 cut(s)	462
Bme18I	GGWCC	2 cut(s)	52, 236
BmgT120I	GGNCC	2 cut(s)	52, 236
BmiI	GGNNCC	2 cut(s)	106, 468
BmrFI	CCNGG	1 cut(s)	462
BmsI	GCATC	1 cut(s)	149
BpmI	CTGGAG	2 cut(s)	156, 360
Bpu10I	CCTNAGC	1 cut(s)	366
Bpu1102I	GCTNAGC	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	126, 245, 461
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 101
Bse118I	RCCGGY	2 cut(s)	145, 336
Bse1I	ACTGG	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	3 cut(s)	126, 245, 461
BseGI	GGATG	1 cut(s)	233
BseLI	CCNNNNNNNGG	2 cut(s)	34, 101
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	2 cut(s)	246, 459
BseXI	GCAGC	1 cut(s)	228
BshFI	GGCC	2 cut(s)	210, 336
BshNI	GGYRCC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	2 cut(s)	146, 337
BslI	CCNNNNNNNGG	2 cut(s)	34, 101
BsmAI	GTCTC	1 cut(s)	255
BsnI	GGCC	2 cut(s)	210, 336
Bso31I	GGTCTC	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	376, 469
Bsp143I	GATC	1 cut(s)	440
Bsp1720I	GCTNAGC	1 cut(s)	183
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	4 cut(s)	149, 162, 239, 314
BspANI	GGCC	2 cut(s)	210, 336
BspCNI	CTCAG	1 cut(s)	323
BspLI	GGNNCC	2 cut(s)	106, 468
BspPI	GGATC	1 cut(s)	435
BspT107I	GGYRCC	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	255
BsrFI	RCCGGY	2 cut(s)	145, 336
BsrI	ACTGG	1 cut(s)	377
BssAI	RCCGGY	2 cut(s)	145, 336
BssECI	CCNNGG	3 cut(s)	126, 245, 461
BssMI	GATC	1 cut(s)	440
BssT1I	CCWWGG	2 cut(s)	126, 245
Bst2UI	CCWGG	1 cut(s)	462
BstBAI	YACGTR	1 cut(s)	101
BstDEI	CTNAG	3 cut(s)	183, 310, 366
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	233
BstKTI	GATC	1 cut(s)	443
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	1 cut(s)	440
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 146, 371, 464
BstNI	CCWGG	1 cut(s)	462
BstSCI	CCNGG	1 cut(s)	460
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BsuRI	GGCC	2 cut(s)	210, 336
BtgI	CCRYGG	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	233
CaiI	CAGNNNCTG	1 cut(s)	461
Cfr10I	RCCGGY	2 cut(s)	145, 336
Cfr13I	GGNCC	2 cut(s)	52, 236
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	39, 380
CviAII	CATG	1 cut(s)	127
CviQI	GTAC	2 cut(s)	39, 380
DdeI	CTNAG	3 cut(s)	183, 310, 366
DpnI	GATC	1 cut(s)	442
DpnII	GATC	1 cut(s)	440
DraI	TTTAAA	1 cut(s)	392
EaeI	YGGCCR	1 cut(s)	334
Ecl136II	GAGCTC	1 cut(s)	374
Eco130I	CCWWGG	2 cut(s)	126, 245
Eco24I	GRGCYC	2 cut(s)	376, 469
Eco31I	GGTCTC	1 cut(s)	255
Eco47I	GGWCC	2 cut(s)	52, 236
Eco53kI	GAGCTC	1 cut(s)	374
Eco57I	CTGAAG	1 cut(s)	237
EcoICRI	GAGCTC	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	460
EcoT14I	CCWWGG	2 cut(s)	126, 245
EcoT38I	GRGCYC	2 cut(s)	376, 469
ErhI	CCWWGG	2 cut(s)	126, 245
FaeI	CATG	1 cut(s)	130
FaiI	YATR	4 cut(s)	98, 128, 425, 486
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FatI	CATG	1 cut(s)	126
FauI	CCCGC	1 cut(s)	142
Fnu4HI	GCNGC	2 cut(s)	242, 315
FokI	GGATG	1 cut(s)	240
FriOI	GRGCYC	2 cut(s)	376, 469
Fsp4HI	GCNGC	2 cut(s)	242, 315
FspBI	CTAG	2 cut(s)	174, 282
GluI	GCNGC	2 cut(s)	242, 315
GsuI	CTGGAG	2 cut(s)	156, 360
HaeIII	GGCC	2 cut(s)	210, 336
HapII	CCGG	2 cut(s)	146, 337
HgaI	GACGC	1 cut(s)	140
Hin1II	CATG	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	2
HpaII	CCGG	2 cut(s)	146, 337
HphI	GGTGA	5 cut(s)	74, 135, 176, 245, 354
Hpy188I	TCNGA	2 cut(s)	56, 453
HpyAV	CCTTC	1 cut(s)	288
HpyCH4IV	ACGT	2 cut(s)	100, 418
HpyCH4V	TGCA	1 cut(s)	299
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 146, 371, 464
HpyF3I	CTNAG	3 cut(s)	183, 310, 366
HpySE526I	ACGT	2 cut(s)	100, 418
Hsp92II	CATG	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	440
LmnI	GCTCC	4 cut(s)	137, 371, 379, 472
LpnPI	CCDG	6 cut(s)	120, 159, 350, 390, 447, 474
Lsp1109I	GCAGC	1 cut(s)	228
LweI	GCATC	1 cut(s)	149
MaeI	CTAG	2 cut(s)	174, 282
MaeII	ACGT	2 cut(s)	100, 418
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	1 cut(s)	442
MboI	GATC	1 cut(s)	440
MboII	GAAGA	2 cut(s)	357, 360
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	2 cut(s)	376, 469
MmeI	TCCRAC	1 cut(s)	476
MnlI	CCTC	6 cut(s)	80, 152, 224, 227, 454, 480
MseI	TTAA	3 cut(s)	222, 391, 481
MslI	CAYNNNNRTG	2 cut(s)	125, 261
MspA1I	CMGCKG	2 cut(s)	241, 314
MspI	CCGG	2 cut(s)	146, 337
MspR9I	CCNGG	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	4 cut(s)	131, 146, 371, 464
NcoI	CCATGG	1 cut(s)	126
NdeII	GATC	1 cut(s)	440
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	2 cut(s)	106, 468
NmuCI	GTSAC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	243, 316
Ppu21I	YACGTR	1 cut(s)	101
Psp124BI	GAGCTC	1 cut(s)	376
Psp1406I	AACGTT	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	2 cut(s)	106, 468
PspPI	GGNCC	2 cut(s)	52, 236
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	1 cut(s)	440
RsaI	GTAC	2 cut(s)	40, 381
RsaNI	GTAC	2 cut(s)	39, 380
RseI	CAYNNNNRTG	2 cut(s)	125, 261
SacI	GAGCTC	1 cut(s)	376
SaqAI	TTAA	3 cut(s)	222, 391, 481
SatI	GCNGC	2 cut(s)	242, 315
Sau3AI	GATC	1 cut(s)	440
Sau96I	GGNCC	2 cut(s)	52, 236
ScrFI	CCNGG	1 cut(s)	462
SduI	GDGCHC	2 cut(s)	376, 469
SfaNI	GCATC	1 cut(s)	149
SfcI	CTRYAG	1 cut(s)	42
SgrAI	CRCCGGYG	1 cut(s)	145
SinI	GGWCC	2 cut(s)	52, 236
SmiMI	CAYNNNNRTG	2 cut(s)	125, 261
SsiI	CCGC	4 cut(s)	149, 162, 239, 314
SspMI	CTAG	2 cut(s)	174, 282
SstI	GAGCTC	1 cut(s)	376
StyD4I	CCNGG	1 cut(s)	460
StyI	CCWWGG	2 cut(s)	126, 245
TaiI	ACGT	2 cut(s)	103, 421
TauI	GCSGC	1 cut(s)	317
Tru1I	TTAA	3 cut(s)	222, 391, 481
Tru9I	TTAA	3 cut(s)	222, 391, 481
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	80
VpaK11BI	GGWCC	2 cut(s)	52, 236
XspI	CTAG	2 cut(s)	174, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.