Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001615

Physical Location & Seq

Genomic Coordinates Forward (+)

40604139 .. 40604789

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1174900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGATCCTTGCTATATCGTTGCATGCGTCATCAGACCATCACAGTGTAAACCACCATTGAAGCCGAGAGCTTCAAGATCTGAAACTCGAATCCAGGTGAGTTTTTTGTCACGTCCTCGGAGAAAACTCCGGCAAGTTTGTGGGTTGAGATCCAATGGACGCCGAGGCAAAACAGAAGAAAAAACGTGGCTGATGTCAGCCTTGCATCAAACCCACTCCGGGCTCTCGGGCTGGCAACTCTCCACCGGCCTCTCACTCGGGTCTGCTCGGGCTCCCTTGCTAACACATGTTGGACTTGATTGCTCTGGCTTTCTGGCCCTGTTCACTTGCCTGTCCCTCGGGCTCCAGCACACACTGGAGCTACTCTCATCATATTGGATAGGAAAAACTCATATAATGTTACATAAACCAACTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

140

Amino Acids

15.51

Weight (kDa)

10.31

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001615)

Species	Orthologous Gene IDs
malus_domestica	MD00G1174900.v1.1 MD01G1174900.v1.1
pyrus_communis	pycom01g02540 pycom02g08640 pycom02g21750 pycom05g02950 pycom05g07810 pycom07g08030 pycom11g21700 pycom13g23410 pycom16g13490 pycom17g16180
rosa_chinensis	RchiOBHm_Chr6g0247261 RchiOBHm_Chr7g0204481
rosa_laevigata	RLG00000007852 RLG00000013807 RLG00000018815 RLG00000023656 RLG00000036145 RLG00000036151
rosa_multiflora	Rmu_sc0000367.1_g000212
rosa_roxburghii	Rroxscaffold_1G00054610 Rroxscaffold_3G00223650 Rroxscaffold_4G00310010 Rroxscaffold_4G00326510 Rroxscaffold_5G00347060 Rroxscaffold_7G00200030
rosa_rugosa	Rorug02G0466400 Rorug04G0195600 Rorug06G0200000
rosa_samantha	Rh2DG335000 Rh4BG049400 Rh4CG056000 Rh4CG286000 Rh4DG269000 Rh6AG158900 Rh6AG260100 Rh6BG163100 Rh6BG263200 Rh6CG155300 Rh6CG155400 Rh6CG262200 Rh6CG325100 Rh6DG138200 Rh6DG148900 Rh6DG254100 Rh6DG254400 Rh6DG310900 Rh7DG185300
rosa_wichuraiana	Rw1G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	12, 144
AcyI	GRCGYC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	219
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	61, 75
AjiI	CACGTC	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	2 cut(s)	71, 361
AluI	AGCT	2 cut(s)	71, 361
AlwI	GGATC	2 cut(s)	12, 144
Ama87I	CYCGRG	4 cut(s)	226, 257, 267, 338
AoxI	GGCC	2 cut(s)	247, 315
AspS9I	GGNCC	1 cut(s)	316
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	109
AvaI	CYCGRG	4 cut(s)	226, 257, 267, 338
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	3 cut(s)	225, 274, 345
BccI	CCATC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	95
BcnI	CCSGG	1 cut(s)	220
BglII	AGATCT	1 cut(s)	77
Bme1390I	CCNGG	2 cut(s)	95, 220
BmeT110I	CYCGRG	4 cut(s)	226, 257, 267, 338
BmgBI	CACGTC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	3 cut(s)	6, 273, 344
BmrFI	CCNGG	2 cut(s)	95, 220
BmsI	GCATC	1 cut(s)	214
BplI	GAGNNNNNCTC	2 cut(s)	350, 382
BpmI	CTGGAG	2 cut(s)	329, 377
BpuMI	CCSGG	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	160
BsaJI	CCNNGG	3 cut(s)	116, 163, 337
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse118I	RCCGGY	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	3 cut(s)	116, 163, 337
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	360
BshFI	GGCC	2 cut(s)	249, 317
BsiHKCI	CYCGRG	4 cut(s)	226, 257, 267, 338
BsiSI	CCGG	3 cut(s)	130, 219, 246
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	249, 317
BsoBI	CYCGRG	4 cut(s)	226, 257, 267, 338
Bsp1286I	GDGCHC	3 cut(s)	225, 274, 345
Bsp143I	GATC	3 cut(s)	4, 77, 149
BspANI	GGCC	2 cut(s)	249, 317
BspLI	GGNNCC	3 cut(s)	6, 273, 344
BspPI	GGATC	2 cut(s)	12, 144
BsrFI	RCCGGY	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	360
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	3 cut(s)	116, 163, 337
BssMI	GATC	3 cut(s)	4, 77, 149
BssNI	GRCGYC	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	45
BstACI	GRCGYC	1 cut(s)	160
BstC8I	GCNNGC	2 cut(s)	25, 233
BstKTI	GATC	3 cut(s)	7, 80, 152
BstMBI	GATC	3 cut(s)	4, 77, 149
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	2 cut(s)	27, 290
BstSCI	CCNGG	2 cut(s)	93, 218
BstX2I	RGATCY	3 cut(s)	4, 77, 149
BstYI	RGATCY	3 cut(s)	4, 77, 149
BsuRI	GGCC	2 cut(s)	249, 317
BtrI	CACGTC	1 cut(s)	113
BtsIMutI	CAGTG	2 cut(s)	50, 353
Cac8I	GCNNGC	2 cut(s)	25, 233
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	316
CseI	GACGC	2 cut(s)	16, 168
CviAII	CATG	2 cut(s)	24, 287
DpnI	GATC	3 cut(s)	6, 79, 151
DpnII	GATC	3 cut(s)	4, 77, 149
Eco24I	GRGCYC	3 cut(s)	225, 274, 345
Eco88I	CYCGRG	4 cut(s)	226, 257, 267, 338
EcoRII	CCWGG	1 cut(s)	93
EcoT38I	GRGCYC	3 cut(s)	225, 274, 345
FaeI	CATG	2 cut(s)	27, 290
FaiI	YATR	7 cut(s)	15, 25, 288, 373, 393, 395, 405
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	2 cut(s)	23, 286
FriOI	GRGCYC	3 cut(s)	225, 274, 345
GsuI	CTGGAG	2 cut(s)	329, 377
HaeIII	GGCC	2 cut(s)	249, 317
HapII	CCGG	3 cut(s)	130, 219, 246
HgaI	GACGC	2 cut(s)	16, 168
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	2 cut(s)	27, 290
HinfI	GANTC	1 cut(s)	90
HpaII	CCGG	3 cut(s)	130, 219, 246
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	50, 324
Hpy188I	TCNGA	3 cut(s)	35, 82, 120
Hpy188III	TCNNGA	1 cut(s)	75
Hpy8I	GTNNAC	2 cut(s)	50, 324
HpyCH4III	ACNGT	1 cut(s)	45
HpyCH4IV	ACGT	2 cut(s)	112, 185
HpyCH4V	TGCA	2 cut(s)	23, 205
HpySE526I	ACGT	2 cut(s)	112, 185
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	2 cut(s)	27, 290
Kzo9I	GATC	3 cut(s)	4, 77, 149
LmnI	GCTCC	3 cut(s)	277, 348, 358
LweI	GCATC	1 cut(s)	214
MaeII	ACGT	2 cut(s)	112, 185
MaeIII	GTNAC	2 cut(s)	108, 399
MalI	GATC	3 cut(s)	6, 79, 151
MboI	GATC	3 cut(s)	4, 77, 149
MboII	GAAGA	1 cut(s)	188
MflI	RGATCY	3 cut(s)	4, 77, 149
MhlI	GDGCHC	3 cut(s)	225, 274, 345
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	4 cut(s)	126, 158, 260, 347
MslI	CAYNNNNRTG	1 cut(s)	43
MspI	CCGG	3 cut(s)	130, 219, 246
MspR9I	CCNGG	2 cut(s)	95, 220
MvaI	CCWGG	1 cut(s)	95
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	3 cut(s)	4, 77, 149
NlaIII	CATG	2 cut(s)	27, 290
NlaIV	GGNNCC	3 cut(s)	6, 273, 344
NmeAIII	GCCGAG	2 cut(s)	90, 188
NmuCI	GTSAC	1 cut(s)	108
NspI	RCATGY	2 cut(s)	27, 290
PaeI	GCATGC	1 cut(s)	27
PciI	ACATGT	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	90
PscI	ACATGT	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	3 cut(s)	6, 273, 344
PspPI	GGNCC	1 cut(s)	316
PsuI	RGATCY	3 cut(s)	4, 77, 149
RseI	CAYNNNNRTG	1 cut(s)	43
Sau3AI	GATC	3 cut(s)	4, 77, 149
Sau96I	GGNCC	1 cut(s)	316
ScrFI	CCNGG	2 cut(s)	95, 220
SduI	GDGCHC	3 cut(s)	225, 274, 345
SetI	ASST	5 cut(s)	73, 99, 115, 188, 363
SfaNI	GCATC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	43
SphI	GCATGC	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	93, 218
TaaI	ACNGT	1 cut(s)	45
TaiI	ACGT	2 cut(s)	115, 188
TaqI	TCGA	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	90
TscAI	CASTG	2 cut(s)	50, 360
TseFI	GTSAC	1 cut(s)	108
Tsp45I	GTSAC	1 cut(s)	108
TspRI	CASTG	2 cut(s)	50, 360
XceI	RCATGY	2 cut(s)	27, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.