Rroxscaffold_4G00326510

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001615
Physical Location & Seq
Reverse (-)
58673880 .. 58676026
2147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00326510.1

Sequence Viewer

Length: 546 bp
ATGAAGAGGGAAGTACTAATTGGGAAGAAGGATGAGATATATGGTGGCAGGTTATTAGCGAGTTTGCAGTTGTTTGTTATAAATGATGCGGATGAGTTTAGTGCGGTTTTGAAGCGTGAATCGAATCCGAAGATATTGATCACCACTTGCCGATTTAACTCTTCTGGTCCTGCTTTTATAGAGGAACTACTTTCGGTGATCCCAAATGCGCAGTACTATAAAAGAGACACTTATGACTTGAAAAGGTACATTTTTGAAACCAAAGAGACTAAACAGGCTGAAGTAAAGGGCAAAAAGACCAAGGATTCCAAAGTTGACGCTATTACTGAAGCAAAACCATTTGCGCGCCTACAGATCTTAACGGTCTTTCTTGTCTTAAACACTCAGGAATGTGGTCCTCGTTTTACCCTTAAATTGATCGGTCTACAGCACGGGACATTTGATCCTAGAGGCGGGGAGTTTGAGTGGGTTCACAAGCTGCTACAACATTTAAATATGCTTTTGATTACAAACCATCCGGCATCAACTGGTACCCTTCACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

181

Amino Acids

20.62

Weight (kDa)

9.17

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 80
Acc16I TGCGCA 1 cut(s) 210
Acc36I ACCTGC 1 cut(s) 39
Acc65I GGTACC 1 cut(s) 530
AccB1I GGYRCC 1 cut(s) 530
AccI GTMKAC 1 cut(s) 424
AccII CGCG 1 cut(s) 346
AciI CCGC 3 cut(s) 89, 104, 453
AclWI GGATC 2 cut(s) 193, 437
AcuI CTGAAG 2 cut(s) 300, 348
AfaI GTAC 4 cut(s) 15, 215, 248, 532
AfiI CCNNNNNNNGG 1 cut(s) 452
AgsI TTSAA 3 cut(s) 112, 241, 257
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AluBI AGCT 1 cut(s) 478
AluI AGCT 1 cut(s) 478
Alw26I GTCTC 2 cut(s) 219, 260
AlwI GGATC 2 cut(s) 193, 437
ApeKI GCWGC 1 cut(s) 478
Asp718I GGTACC 1 cut(s) 530
AspLEI GCGC 3 cut(s) 211, 346, 348
AspS9I GGNCC 2 cut(s) 167, 395
AsuHPI GGTGA 2 cut(s) 133, 208
AvaII GGWCC 2 cut(s) 167, 395
BanI GGYRCC 1 cut(s) 530
BbvI GCAGC 1 cut(s) 465
BccI CCATC 1 cut(s) 522
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 2 cut(s) 219, 260
BfaI CTAG 2 cut(s) 447, 544
BfmI CTRYAG 2 cut(s) 350, 425
BfuAI ACCTGC 1 cut(s) 39
BglII AGATCT 1 cut(s) 354
BisI GCNGC 1 cut(s) 479
BlsI GCNGC 1 cut(s) 480
BmcAI AGTACT 2 cut(s) 15, 215
Bme18I GGWCC 2 cut(s) 167, 395
BmgT120I GGNCC 2 cut(s) 167, 395
BmiI GGNNCC 1 cut(s) 532
BmsI GCATC 2 cut(s) 76, 530
BsaBI GATNNNNATC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 300
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse1I ACTGG 1 cut(s) 532
Bse8I GATNNNNATC 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 3 cut(s) 37, 97, 514
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMII CTCAG 1 cut(s) 398
BseNI ACTGG 1 cut(s) 532
BsePI GCGCGC 1 cut(s) 344
BseXI GCAGC 1 cut(s) 465
Bsh1236I CGCG 1 cut(s) 346
BshNI GGYRCC 1 cut(s) 530
BsiSI CCGG 1 cut(s) 518
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 1 cut(s) 452
BsmAI GTCTC 2 cut(s) 219, 260
BsmFI GGGAC 1 cut(s) 448
Bsp143I GATC 5 cut(s) 138, 198, 354, 417, 442
BspACI CCGC 3 cut(s) 89, 104, 453
BspCNI CTCAG 1 cut(s) 397
BspFNI CGCG 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 532
BspMI ACCTGC 1 cut(s) 39
BspPI GGATC 2 cut(s) 193, 437
BspT107I GGYRCC 1 cut(s) 530
BsrI ACTGG 1 cut(s) 532
BssECI CCNNGG 1 cut(s) 300
BssHII GCGCGC 1 cut(s) 344
BssMI GATC 5 cut(s) 138, 198, 354, 417, 442
BssT1I CCWWGG 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 1 cut(s) 384
BstF5I GGATG 3 cut(s) 37, 97, 514
BstFNI CGCG 1 cut(s) 346
BstHHI GCGC 3 cut(s) 211, 346, 348
BstKTI GATC 5 cut(s) 141, 201, 357, 420, 445
BstMAI GTCTC 2 cut(s) 219, 260
BstMBI GATC 5 cut(s) 138, 198, 354, 417, 442
BstSFI CTRYAG 2 cut(s) 350, 425
BstUI CGCG 1 cut(s) 346
BstV1I GCAGC 1 cut(s) 465
BstX2I RGATCY 1 cut(s) 354
BstYI RGATCY 1 cut(s) 354
BtsCI GGATG 3 cut(s) 37, 97, 514
BveI ACCTGC 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 346
CfoI GCGC 3 cut(s) 211, 346, 348
Cfr13I GGNCC 2 cut(s) 167, 395
CseI GACGC 1 cut(s) 326
Csp6I GTAC 4 cut(s) 14, 214, 247, 531
CviJI RGCY 2 cut(s) 278, 478
CviKI_1 RGCY 2 cut(s) 278, 478
CviQI GTAC 4 cut(s) 14, 214, 247, 531
DdeI CTNAG 1 cut(s) 384
DpnI GATC 5 cut(s) 140, 200, 356, 419, 444
DpnII GATC 5 cut(s) 138, 198, 354, 417, 442
DraI TTTAAA 1 cut(s) 492
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 300
Eco47I GGWCC 2 cut(s) 167, 395
Eco57I CTGAAG 2 cut(s) 300, 348
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
FaiI YATR 7 cut(s) 40, 42, 80, 179, 219, 234, 497
FalI AAGNNNNNCTT 2 cut(s) 214, 246
FaqI GGGAC 1 cut(s) 448
FauI CCCGC 1 cut(s) 446
FbaI TGATCA 1 cut(s) 138
FblI GTMKAC 1 cut(s) 424
Fnu4HI GCNGC 1 cut(s) 479
FokI GGATG 3 cut(s) 44, 104, 501
Fsp4HI GCNGC 1 cut(s) 479
FspBI CTAG 2 cut(s) 447, 544
FspI TGCGCA 1 cut(s) 210
GlaI GCGC 3 cut(s) 210, 345, 347
GluI GCNGC 1 cut(s) 479
HapII CCGG 1 cut(s) 518
HgaI GACGC 1 cut(s) 326
HhaI GCGC 3 cut(s) 211, 346, 348
Hin6I GCGC 3 cut(s) 209, 344, 346
HinP1I GCGC 3 cut(s) 209, 344, 346
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 3 cut(s) 119, 124, 305
HpaII CCGG 1 cut(s) 518
HphI GGTGA 2 cut(s) 133, 208
Hpy166II GTNNAC 3 cut(s) 316, 425, 472
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 1 cut(s) 386
Hpy8I GTNNAC 3 cut(s) 316, 425, 472
HpyAV CCTTC 2 cut(s) 22, 545
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4V TGCA 1 cut(s) 67
HpyF3I CTNAG 1 cut(s) 384
HspAI GCGC 3 cut(s) 209, 344, 346
KpnI GGTACC 1 cut(s) 534
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 5 cut(s) 138, 198, 354, 417, 442
LpnPI CCDG 7 cut(s) 34, 150, 183, 260, 371, 513, 531
Lsp1109I GCAGC 1 cut(s) 465
LweI GCATC 2 cut(s) 76, 530
MaeI CTAG 2 cut(s) 447, 544
MalI GATC 5 cut(s) 140, 200, 356, 419, 444
MboI GATC 5 cut(s) 138, 198, 354, 417, 442
MboII GAAGA 4 cut(s) 16, 37, 142, 153
MflI RGATCY 1 cut(s) 354
MluCI AATT 2 cut(s) 18, 413
MnlI CCTC 3 cut(s) 175, 408, 443
MseI TTAA 5 cut(s) 156, 359, 377, 411, 491
MspI CCGG 1 cut(s) 518
MvnI CGCG 1 cut(s) 346
NdeII GATC 5 cut(s) 138, 198, 354, 417, 442
NlaIV GGNNCC 1 cut(s) 532
NsbI TGCGCA 1 cut(s) 210
PauI GCGCGC 1 cut(s) 344
PfeI GAWTC 3 cut(s) 119, 124, 305
PkrI GCNGC 1 cut(s) 480
PsiI TTATAA 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 532
PspPI GGNCC 2 cut(s) 167, 395
PsuI RGATCY 1 cut(s) 354
PteI GCGCGC 1 cut(s) 344
RsaI GTAC 4 cut(s) 15, 215, 248, 532
RsaNI GTAC 4 cut(s) 14, 214, 247, 531
SaqAI TTAA 5 cut(s) 156, 359, 377, 411, 491
SatI GCNGC 1 cut(s) 479
Sau3AI GATC 5 cut(s) 138, 198, 354, 417, 442
Sau96I GGNCC 2 cut(s) 167, 395
ScaI AGTACT 2 cut(s) 15, 215
SetI ASST 3 cut(s) 53, 248, 480
SfaNI GCATC 2 cut(s) 76, 530
SfcI CTRYAG 2 cut(s) 350, 425
SinI GGWCC 2 cut(s) 167, 395
SmiI ATTTAAAT 1 cut(s) 492
Sse9I AATT 2 cut(s) 18, 413
SsiI CCGC 3 cut(s) 89, 104, 453
SspMI CTAG 2 cut(s) 447, 544
StyI CCWWGG 1 cut(s) 300
SwaI ATTTAAAT 1 cut(s) 492
TaaI ACNGT 1 cut(s) 364
TaqI TCGA 1 cut(s) 122
TaqII GACCGA 1 cut(s) 410
TasI AATT 2 cut(s) 18, 413
TatI WGTACW 2 cut(s) 13, 213
TfiI GAWTC 3 cut(s) 119, 124, 305
Tru1I TTAA 5 cut(s) 156, 359, 377, 411, 491
Tru9I TTAA 5 cut(s) 156, 359, 377, 411, 491
TseI GCWGC 1 cut(s) 478
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 167, 395
XmiI GTMKAC 1 cut(s) 424
XspI CTAG 2 cut(s) 447, 544
ZrmI AGTACT 2 cut(s) 15, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.