Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001615

Physical Location & Seq

Genomic Coordinates Forward (+)

10633842 .. 10634129

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g07810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGATTTTGGGTCAGGTCATATTACCCGTTTACTTTAACGGGTATTACACGACACGACCCGTTAAGCTATCGGGTATGACACGAAAACGACACGAAAACGAGAAACACAACACAAGTGCCAGGTTTATGTGCCTGATTTATTTATTTATTTATGAGAAATACCTAGAAATAGGACAATTTCTTAATCTTGGGACAAAATATGACATTTCGAATATGCACACCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005356 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009679 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015578 GO:0015672 GO:0015749 GO:0015757 GO:0015761 GO:0016020 GO:0019725 GO:0022804 GO:0022857 GO:0022890 GO:0033500 GO:0034219 GO:0034220 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0044464 GO:0046323 GO:0048878 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051716 GO:0055055 GO:0055056 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1901701 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

76

Amino Acids

8.93

Weight (kDa)

9.37

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001615)

Species	Orthologous Gene IDs
malus_domestica	MD00G1174900.v1.1 MD01G1174900.v1.1
pyrus_communis	pycom01g02540 pycom02g08640 pycom02g21750 pycom05g02950 pycom05g07810 pycom07g08030 pycom11g21700 pycom13g23410 pycom16g13490 pycom17g16180
rosa_chinensis	RchiOBHm_Chr6g0247261 RchiOBHm_Chr7g0204481
rosa_laevigata	RLG00000007852 RLG00000013807 RLG00000018815 RLG00000023656 RLG00000036145 RLG00000036151
rosa_multiflora	Rmu_sc0000367.1_g000212
rosa_roxburghii	Rroxscaffold_1G00054610 Rroxscaffold_3G00223650 Rroxscaffold_4G00310010 Rroxscaffold_4G00326510 Rroxscaffold_5G00347060 Rroxscaffold_7G00200030
rosa_rugosa	Rorug02G0466400 Rorug04G0195600 Rorug06G0200000
rosa_samantha	Rh2DG335000 Rh4BG049400 Rh4CG056000 Rh4CG286000 Rh4DG269000 Rh6AG158900 Rh6AG260100 Rh6BG163100 Rh6BG263200 Rh6CG155300 Rh6CG155400 Rh6CG262200 Rh6CG325100 Rh6DG138200 Rh6DG148900 Rh6DG254100 Rh6DG254400 Rh6DG310900 Rh7DG185300
rosa_wichuraiana	Rw1G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
AsuII	TTCGAA	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	121
BfaI	CTAG	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	121
Bpu14I	TTCGAA	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	205
Bsp119I	TTCGAA	1 cut(s)	209
BspT104I	TTCGAA	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	121
BstBI	TTCGAA	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	119
CviJI	RGCY	1 cut(s)	67
CviKI_1	RGCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	119
FaiI	YATR	6 cut(s)	20, 77, 128, 153, 201, 215
FaqI	GGGAC	1 cut(s)	205
FspBI	CTAG	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	31
Hpy8I	GTNNAC	1 cut(s)	31
HpyCH4V	TGCA	1 cut(s)	217
LpnPI	CCDG	3 cut(s)	106, 133, 146
MaeI	CTAG	1 cut(s)	164
MluCI	AATT	2 cut(s)	176, 223
MseI	TTAA	3 cut(s)	36, 63, 183
MspR9I	CCNGG	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	121
NspV	TTCGAA	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	119
SaqAI	TTAA	3 cut(s)	36, 63, 183
ScrFI	CCNGG	1 cut(s)	121
SetI	ASST	4 cut(s)	18, 69, 125, 165
SfuI	TTCGAA	1 cut(s)	209
Sse9I	AATT	2 cut(s)	176, 223
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	119
TaqI	TCGA	1 cut(s)	209
TasI	AATT	2 cut(s)	176, 223
Tru1I	TTAA	3 cut(s)	36, 63, 183
Tru9I	TTAA	3 cut(s)	36, 63, 183
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.