Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001615

Physical Location & Seq

Genomic Coordinates Forward (+)

48941017 .. 48941370

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG269000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCGCGGTTCAATCTCTTGACCGTTAGGGCCGGCATTGACTTGATGTCGACGCCGTTAATGTTGGAGATTCGCCAGATCACAGTGCTTAGGCTTCCACCTCCACTTGACGAGTTCACGGCCGTTGGATTTGTTGTTGGAAATGCAATTCCAGCCCTTGAAGATCCCCTTGCAGGTGTTGTCGTACTTGGGAGAAGCATTAGGGTCATAGATCCAGGCTCCATCGGAGTAGTCGCAGGACTCGACCAGCTCCGTCAGGTCGGATCCAGGGGGTTTCGGGAATTCGAGGGAGCTGTGAGGTTGGGAAGGAACGGAGGAGGTGTTTTTGATGCAAGAGAGTGGCAAAGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.73

Weight (kDa)

8.95

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001615)

Species	Orthologous Gene IDs
malus_domestica	MD00G1174900.v1.1 MD01G1174900.v1.1
pyrus_communis	pycom01g02540 pycom02g08640 pycom02g21750 pycom05g02950 pycom05g07810 pycom07g08030 pycom11g21700 pycom13g23410 pycom16g13490 pycom17g16180
rosa_chinensis	RchiOBHm_Chr6g0247261 RchiOBHm_Chr7g0204481
rosa_laevigata	RLG00000007852 RLG00000013807 RLG00000018815 RLG00000023656 RLG00000036145 RLG00000036151
rosa_multiflora	Rmu_sc0000367.1_g000212
rosa_roxburghii	Rroxscaffold_1G00054610 Rroxscaffold_3G00223650 Rroxscaffold_4G00310010 Rroxscaffold_4G00326510 Rroxscaffold_5G00347060 Rroxscaffold_7G00200030
rosa_rugosa	Rorug02G0466400 Rorug04G0195600 Rorug06G0200000
rosa_samantha	Rh2DG335000 Rh4BG049400 Rh4CG056000 Rh4CG286000 Rh4DG269000 Rh6AG158900 Rh6AG260100 Rh6BG163100 Rh6BG263200 Rh6CG155300 Rh6CG155400 Rh6CG262200 Rh6CG325100 Rh6DG138200 Rh6DG148900 Rh6DG254100 Rh6DG254400 Rh6DG310900 Rh7DG185300
rosa_wichuraiana	Rw1G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	164
Acc36I	ACCTGC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	50
AccII	CGCG	1 cut(s)	7
AciI	CCGC	1 cut(s)	7
AclWI	GGATC	4 cut(s)	158, 206, 258, 271
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	13, 161
AhdI	GACNNNNNGTC	1 cut(s)	46
AjnI	CCWGG	2 cut(s)	214, 266
AluBI	AGCT	2 cut(s)	250, 293
AluI	AGCT	2 cut(s)	250, 293
AlwI	GGATC	4 cut(s)	158, 206, 258, 271
AoxI	GGCC	2 cut(s)	30, 120
ApoI	RAATTY	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	30
BamHI	GGATCC	1 cut(s)	263
BccI	CCATC	2 cut(s)	230, 342
BceAI	ACGGC	3 cut(s)	40, 107, 135
BciT130I	CCWGG	2 cut(s)	216, 268
BfuAI	ACCTGC	1 cut(s)	164
Bme1390I	CCNGG	2 cut(s)	216, 268
BmeRI	GACNNNNNGTC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	2 cut(s)	220, 265
BmrFI	CCNGG	2 cut(s)	216, 268
BmsI	GCATC	1 cut(s)	319
Bpu10I	CCTNAGC	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	267
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse118I	RCCGGY	1 cut(s)	32
BseBI	CCWGG	2 cut(s)	216, 268
BseDI	CCNNGG	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	330
BseX3I	CGGCCG	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	7
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	32, 122
BsiEI	CGRYCG	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	173
BsnI	GGCC	2 cut(s)	32, 122
Bsp143I	GATC	4 cut(s)	78, 163, 211, 263
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	2 cut(s)	32, 122
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	220, 265
BspMI	ACCTGC	1 cut(s)	164
BspPI	GGATC	4 cut(s)	158, 206, 258, 271
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	4 cut(s)	78, 163, 211, 263
BssNI	GRCGYC	1 cut(s)	53
Bst2UI	CCWGG	2 cut(s)	216, 268
Bst4CI	ACNGT	2 cut(s)	25, 85
BstACI	GRCGYC	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	89
BstFNI	CGCG	1 cut(s)	7
BstKTI	GATC	4 cut(s)	81, 166, 214, 266
BstMBI	GATC	4 cut(s)	78, 163, 211, 263
BstMCI	CGRYCG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	2 cut(s)	216, 268
BstSCI	CCNGG	2 cut(s)	214, 266
BstUI	CGCG	1 cut(s)	7
BstX2I	RGATCY	3 cut(s)	163, 211, 263
BstYI	RGATCY	3 cut(s)	163, 211, 263
BstZI	CGGCCG	1 cut(s)	120
BsuRI	GGCC	2 cut(s)	32, 122
BtsIMutI	CAGTG	1 cut(s)	90
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	34
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	30
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	185
CviJI	RGCY	7 cut(s)	32, 94, 122, 155, 219, 250, 293
CviKI_1	RGCY	7 cut(s)	32, 94, 122, 155, 219, 250, 293
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	4 cut(s)	80, 165, 213, 265
DpnII	GATC	4 cut(s)	78, 163, 211, 263
DriI	GACNNNNNGTC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	120
EagI	CGGCCG	1 cut(s)	120
Eam1105I	GACNNNNNGTC	1 cut(s)	46
EclXI	CGGCCG	1 cut(s)	120
Eco52I	CGGCCG	1 cut(s)	120
EcoRI	GAATTC	1 cut(s)	281
EcoRII	CCWGG	2 cut(s)	214, 266
FaiI	YATR	1 cut(s)	209
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FblI	GTMKAC	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	32, 122
HapII	CCGG	1 cut(s)	33
HgaI	GACGC	1 cut(s)	61
Hin1I	GRCGYC	1 cut(s)	53
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	2 cut(s)	70, 240
HpaII	CCGG	1 cut(s)	33
Hpy166II	GTNNAC	2 cut(s)	51, 117
Hpy188I	TCNGA	2 cut(s)	227, 263
Hpy188III	TCNNGA	2 cut(s)	19, 278
Hpy8I	GTNNAC	2 cut(s)	51, 117
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	300
HpyCH4III	ACNGT	2 cut(s)	25, 85
HpyCH4V	TGCA	3 cut(s)	146, 173, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	89
Hsp92I	GRCGYC	1 cut(s)	53
KroI	GCCGGC	1 cut(s)	32
KroNI	GCCGGC	1 cut(s)	34
Kzo9I	GATC	4 cut(s)	78, 163, 211, 263
LmnI	GCTCC	3 cut(s)	224, 255, 290
LweI	GCATC	1 cut(s)	319
MalI	GATC	4 cut(s)	80, 165, 213, 265
MboI	GATC	4 cut(s)	78, 163, 211, 263
MboII	GAAGA	1 cut(s)	173
MflI	RGATCY	3 cut(s)	163, 211, 263
MluCI	AATT	2 cut(s)	147, 281
MlyI	GAGTC	1 cut(s)	234
MmeI	TCCRAC	4 cut(s)	45, 106, 118, 241
MnlI	CCTC	5 cut(s)	111, 280, 291, 308, 311
MroNI	GCCGGC	1 cut(s)	32
MseI	TTAA	1 cut(s)	59
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	2 cut(s)	216, 268
MvaI	CCWGG	2 cut(s)	216, 268
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	152
NaeI	GCCGGC	1 cut(s)	34
NdeII	GATC	4 cut(s)	78, 163, 211, 263
NgoMIV	GCCGGC	1 cut(s)	32
NlaIV	GGNNCC	2 cut(s)	220, 265
PaqCI	CACCTGC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PdiI	GCCGGC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	70
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	214, 266
PspGI	CCWGG	2 cut(s)	214, 266
PspN4I	GGNNCC	2 cut(s)	220, 265
PspPI	GGNCC	1 cut(s)	30
PsuI	RGATCY	3 cut(s)	163, 211, 263
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
SalI	GTCGAC	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	59
Sau3AI	GATC	4 cut(s)	78, 163, 211, 263
Sau96I	GGNCC	1 cut(s)	30
SchI	GAGTC	1 cut(s)	234
ScrFI	CCNGG	2 cut(s)	216, 268
SetI	ASST	7 cut(s)	103, 178, 252, 261, 295, 302, 322
SfaNI	GCATC	1 cut(s)	319
Sse9I	AATT	2 cut(s)	147, 281
SsiI	CCGC	1 cut(s)	7
StyD4I	CCNGG	2 cut(s)	214, 266
TaaI	ACNGT	2 cut(s)	25, 85
TaqI	TCGA	3 cut(s)	50, 243, 285
TasI	AATT	2 cut(s)	147, 281
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	1 cut(s)	90
TspGWI	ACGGA	2 cut(s)	242, 327
TspRI	CASTG	1 cut(s)	90
XapI	RAATTY	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.