Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001615

Physical Location & Seq

Genomic Coordinates Reverse (-)

75976947 .. 75988507

Gene Structure 11561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00054610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCTACCGGACATTCGAATGTGTTCAAAGAACCTCGGGGTGGTCTATCCGGCTTGCAAAGAAAATACTTGGAGTTGGTTTGAACAAGACAAGAAGGAACAGCAATTGGGAGCAACGGCCTCTAACACCCATTTAGAATCTCCATATCGAAGCACCCGGTCGAAGTCTTCGCTCGAATTGGAGACAATCCATGAGCCAAAGACACGCAACACTGCGAAATCGGTCAAGTTCGGTCAAGTTCCGAACTTGGTCTCATATTTTGATAAAAGTTCGGGACCTTCGAGAGATGAGAAAGAGAAAAAGAGAGAAGAAAACAATGGTGATTCGAGAAAAGTTGTTCGGATCTCTATTGAAGACAATGAAGCCGCAGATGATCGAGACAATTCGAAGTTTAGGGAGAGACTGCAGGAAGTGCTGAAATGGTGCTCAATGAAGATGATTGAATGTGGTCCTCGTTTTACCCTTAAATTGATCAATCTACAGCACGGGACATTTGATCCTAGAGGCGGGGAGTTTGAGTGGGTTCACAAGCTGCTACAACATTTAAATATGCTTTTGATTACAAACCATCCGGCATCAACTGGTACCCTTCACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

199

Amino Acids

22.95

Weight (kDa)

8.62

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001615)

Species	Orthologous Gene IDs
malus_domestica	MD00G1174900.v1.1 MD01G1174900.v1.1
pyrus_communis	pycom01g02540 pycom02g08640 pycom02g21750 pycom05g02950 pycom05g07810 pycom07g08030 pycom11g21700 pycom13g23410 pycom16g13490 pycom17g16180
rosa_chinensis	RchiOBHm_Chr6g0247261 RchiOBHm_Chr7g0204481
rosa_laevigata	RLG00000007852 RLG00000013807 RLG00000018815 RLG00000023656 RLG00000036145 RLG00000036151
rosa_multiflora	Rmu_sc0000367.1_g000212
rosa_roxburghii	Rroxscaffold_1G00054610 Rroxscaffold_3G00223650 Rroxscaffold_4G00310010 Rroxscaffold_4G00326510 Rroxscaffold_5G00347060 Rroxscaffold_7G00200030
rosa_rugosa	Rorug02G0466400 Rorug04G0195600 Rorug06G0200000
rosa_samantha	Rh2DG335000 Rh4BG049400 Rh4CG056000 Rh4CG286000 Rh4DG269000 Rh6AG158900 Rh6AG260100 Rh6BG163100 Rh6BG263200 Rh6CG155300 Rh6CG155400 Rh6CG262200 Rh6CG325100 Rh6DG138200 Rh6DG148900 Rh6DG254100 Rh6DG254400 Rh6DG310900 Rh7DG185300
rosa_wichuraiana	Rw1G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	584
AccB1I	GGYRCC	1 cut(s)	584
AciI	CCGC	2 cut(s)	366, 507
AclWI	GGATC	2 cut(s)	350, 491
AfaI	GTAC	1 cut(s)	586
AfiI	CCNNNNNNNGG	2 cut(s)	40, 506
AgsI	TTSAA	4 cut(s)	27, 83, 353, 443
AluBI	AGCT	1 cut(s)	532
AluI	AGCT	1 cut(s)	532
Alw21I	GWGCWC	1 cut(s)	428
Alw26I	GTCTC	4 cut(s)	176, 256, 372, 394
AlwI	GGATC	2 cut(s)	350, 491
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	532
Asp700I	GAANNNNTTC	1 cut(s)	22
Asp718I	GGTACC	1 cut(s)	584
AspS9I	GGNCC	2 cut(s)	275, 449
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	332
AsuII	TTCGAA	2 cut(s)	16, 386
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	2 cut(s)	275, 449
BanI	GGYRCC	1 cut(s)	584
BbsI	GAAGAC	2 cut(s)	159, 360
Bbv12I	GWGCWC	1 cut(s)	428
BbvI	GCAGC	1 cut(s)	519
BccI	CCATC	1 cut(s)	576
BceAI	ACGGC	1 cut(s)	132
BclI	TGATCA	1 cut(s)	471
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	4 cut(s)	176, 256, 372, 394
BfaI	CTAG	2 cut(s)	501, 598
BfmI	CTRYAG	2 cut(s)	404, 479
BisI	GCNGC	2 cut(s)	366, 533
BlsI	GCNGC	2 cut(s)	367, 534
Bme1390I	CCNGG	1 cut(s)	157
Bme18I	GGWCC	2 cut(s)	275, 449
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	275, 449
BmiI	GGNNCC	2 cut(s)	276, 586
BmrFI	CCNGG	1 cut(s)	157
BmsI	GCATC	1 cut(s)	584
BpiI	GAAGAC	2 cut(s)	159, 360
Bpu14I	TTCGAA	2 cut(s)	16, 386
BpuMI	CCSGG	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	34
BsaWI	WCCGGW	1 cut(s)	7
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 506
Bse1I	ACTGG	1 cut(s)	586
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	2 cut(s)	40, 506
BseNI	ACTGG	1 cut(s)	586
BseXI	GCAGC	1 cut(s)	519
Bsh1285I	CGRYCG	1 cut(s)	161
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	584
BsiEI	CGRYCG	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	428
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	4 cut(s)	8, 50, 157, 572
BslFI	GGGAC	2 cut(s)	288, 502
BslI	CCNNNNNNNGG	2 cut(s)	40, 506
BsmAI	GTCTC	4 cut(s)	176, 256, 372, 394
BsmFI	GGGAC	2 cut(s)	288, 502
BsnI	GGCC	1 cut(s)	119
Bso31I	GGTCTC	1 cut(s)	256
BsoBI	CYCGRG	1 cut(s)	35
Bsp119I	TTCGAA	2 cut(s)	16, 386
Bsp1286I	GDGCHC	1 cut(s)	428
Bsp143I	GATC	4 cut(s)	342, 373, 471, 496
BspACI	CCGC	2 cut(s)	366, 507
BspANI	GGCC	1 cut(s)	119
BspLI	GGNNCC	2 cut(s)	276, 586
BspMAI	CTGCAG	1 cut(s)	408
BspPI	GGATC	2 cut(s)	350, 491
BspT104I	TTCGAA	2 cut(s)	16, 386
BspT107I	GGYRCC	1 cut(s)	584
BspTNI	GGTCTC	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	586
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	4 cut(s)	342, 373, 471, 496
BstAPI	GCANNNNNTGC	1 cut(s)	412
BstBI	TTCGAA	2 cut(s)	16, 386
BstC8I	GCNNGC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	568
BstKTI	GATC	4 cut(s)	345, 376, 474, 499
BstMAI	GTCTC	4 cut(s)	176, 256, 372, 394
BstMBI	GATC	4 cut(s)	342, 373, 471, 496
BstMCI	CGRYCG	1 cut(s)	161
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstSCI	CCNGG	1 cut(s)	155
BstSFI	CTRYAG	2 cut(s)	404, 479
BstV1I	GCAGC	1 cut(s)	519
BstV2I	GAAGAC	2 cut(s)	159, 360
BstX2I	RGATCY	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	568
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	275, 449
Csp6I	GTAC	1 cut(s)	585
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	5 cut(s)	53, 119, 196, 365, 532
CviKI_1	RGCY	5 cut(s)	53, 119, 196, 365, 532
CviQI	GTAC	1 cut(s)	585
DpnI	GATC	4 cut(s)	344, 375, 473, 498
DpnII	GATC	4 cut(s)	342, 373, 471, 496
DraI	TTTAAA	1 cut(s)	546
Eco31I	GGTCTC	1 cut(s)	256
Eco47I	GGWCC	2 cut(s)	275, 449
Eco88I	CYCGRG	1 cut(s)	35
EcoO109I	RGGNCCY	1 cut(s)	275
FaeI	CATG	1 cut(s)	194
FaiI	YATR	4 cut(s)	145, 192, 256, 551
FaqI	GGGAC	2 cut(s)	288, 502
FatI	CATG	1 cut(s)	190
FauI	CCCGC	1 cut(s)	500
FbaI	TGATCA	1 cut(s)	471
Fnu4HI	GCNGC	2 cut(s)	366, 533
FokI	GGATG	1 cut(s)	555
Fsp4HI	GCNGC	2 cut(s)	366, 533
FspBI	CTAG	2 cut(s)	501, 598
GluI	GCNGC	2 cut(s)	366, 533
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	4 cut(s)	8, 50, 157, 572
Hin1II	CATG	1 cut(s)	194
HinfI	GANTC	2 cut(s)	137, 323
HpaII	CCGG	4 cut(s)	8, 50, 157, 572
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	2 cut(s)	243, 342
Hpy188III	TCNNGA	4 cut(s)	273, 282, 327, 377
Hpy8I	GTNNAC	1 cut(s)	526
HpyAV	CCTTC	3 cut(s)	88, 288, 599
HpyCH4V	TGCA	2 cut(s)	57, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
Hsp92II	CATG	1 cut(s)	194
KpnI	GGTACC	1 cut(s)	588
Ksp22I	TGATCA	1 cut(s)	471
Kzo9I	GATC	4 cut(s)	342, 373, 471, 496
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	6 cut(s)	21, 63, 170, 392, 567, 585
Lsp1109I	GCAGC	1 cut(s)	519
LweI	GCATC	1 cut(s)	584
MaeI	CTAG	2 cut(s)	501, 598
MalI	GATC	4 cut(s)	344, 375, 473, 498
MboI	GATC	4 cut(s)	342, 373, 471, 496
MboII	GAAGA	4 cut(s)	159, 320, 365, 445
MfeI	CAATTG	1 cut(s)	104
MflI	RGATCY	1 cut(s)	342
MhlI	GDGCHC	1 cut(s)	428
MluCI	AATT	4 cut(s)	104, 176, 382, 467
MnlI	CCTC	4 cut(s)	44, 130, 462, 497
MroXI	GAANNNNTTC	1 cut(s)	22
MseI	TTAA	2 cut(s)	465, 545
MslI	CAYNNNNRTG	1 cut(s)	17
MspI	CCGG	4 cut(s)	8, 50, 157, 572
MspR9I	CCNGG	1 cut(s)	157
MunI	CAATTG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	412
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	4 cut(s)	342, 373, 471, 496
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	2 cut(s)	276, 586
NspV	TTCGAA	2 cut(s)	16, 386
PcsI	WCGNNNNNNNCGW	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	137, 323
PkrI	GCNGC	2 cut(s)	367, 534
PpuMI	RGGWCCY	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	275
PspN4I	GGNNCC	2 cut(s)	276, 586
PspPI	GGNCC	2 cut(s)	275, 449
PspPPI	RGGWCCY	1 cut(s)	275
PstI	CTGCAG	1 cut(s)	408
PsuI	RGATCY	1 cut(s)	342
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	465, 545
SatI	GCNGC	2 cut(s)	366, 533
Sau3AI	GATC	4 cut(s)	342, 373, 471, 496
Sau96I	GGNCC	2 cut(s)	275, 449
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	428
SetI	ASST	3 cut(s)	36, 280, 534
SfaNI	GCATC	1 cut(s)	584
SfcI	CTRYAG	2 cut(s)	404, 479
SfuI	TTCGAA	2 cut(s)	16, 386
SinI	GGWCC	2 cut(s)	275, 449
SmiI	ATTTAAAT	1 cut(s)	546
SmiMI	CAYNNNNRTG	1 cut(s)	17
Sse9I	AATT	4 cut(s)	104, 176, 382, 467
SsiI	CCGC	2 cut(s)	366, 507
SspMI	CTAG	2 cut(s)	501, 598
StyD4I	CCNGG	1 cut(s)	155
SwaI	ATTTAAAT	1 cut(s)	546
TaqI	TCGA	8 cut(s)	16, 148, 161, 174, 281, 326, 376, 386
TaqII	GACCGA	2 cut(s)	211, 221
TasI	AATT	4 cut(s)	104, 176, 382, 467
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	2 cut(s)	137, 323
Tru1I	TTAA	2 cut(s)	465, 545
Tru9I	TTAA	2 cut(s)	465, 545
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	1 cut(s)	532
TspDTI	ATGAA	2 cut(s)	375, 446
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	2 cut(s)	275, 449
XmnI	GAANNNNTTC	1 cut(s)	22
XspI	CTAG	2 cut(s)	501, 598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.