Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001615

Physical Location & Seq

Genomic Coordinates Reverse (-)

45204978 .. 45216572

Gene Structure 11595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG260100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGATTTCCTTATACAATATAGAAATACTAAAAATAAGGAATGGACGACGATTGACATATGAGGCGCTGTTAGTGTCGGTGATTCGCCAGATCACAGTGCTTAGGCTTCCACCTCCACTTGACGAGATCGCGGCCGTTGAATTTGTTGCTGGAAATGCAATTCTAGCCCTTGAAGATCTCCTTGCAAGTGTTGCCGTACTTGGGAGAAGCATTAGGGTCGTAGATCCAGGCTCCATCAGAGTAGTCGCAGGACCCGACCGGCTCCGTCAGGTTAGATCCTGGGCATTTCCGAAATTCGAGGGAGCTATGAGCATTGAAGGCTTCAAGCTCGAGCAGAATAGGAGCATTGGAGCAAACGTTTGGAGCAAGAGGTTGGAGTTTGATTTGGCCATGCAGAGCAGTGATTTGAAAAGAGCTCTCCAGTGCCTTCTCACAATGAGCAATAGCAGGGACTTGGGGCAAGATAATTCAGGATTTGATTTGAAGGACATTCTTACTAGAACAACTAAGAAAGAGAATATATCGGAAGCTGTCCAAGGAATAGCGAAATTTACAAAGGAGTTTTTGGATCTTATTGATGCCGCAGACGCTACTGGACAGGCTGAAATAGCTCGGGAGGCTCTGAAGAGGTTGGCTATTGCGGCTTCTTTGAAAGGAGCTTTACAGGGTCATGAATTAAGAGGACAAGCTCTTCGGTTAGCCAATCATGGAGAGTTGACACGGTTTAGTGTACAGTCTCGAGGACGTTTGGCAACCAACGGACACAGTACTCCATCACAAGATTGTAATCCGAGCTTGGAAAGGAAACCTGTCCCATGGCCATCTACAAAACCAGACAAGAAGCAAATATACTTGAAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

287

Amino Acids

31.67

Weight (kDa)

9.66

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001615)

Species	Orthologous Gene IDs
malus_domestica	MD00G1174900.v1.1 MD01G1174900.v1.1
pyrus_communis	pycom01g02540 pycom02g08640 pycom02g21750 pycom05g02950 pycom05g07810 pycom07g08030 pycom11g21700 pycom13g23410 pycom16g13490 pycom17g16180
rosa_chinensis	RchiOBHm_Chr6g0247261 RchiOBHm_Chr7g0204481
rosa_laevigata	RLG00000007852 RLG00000013807 RLG00000018815 RLG00000023656 RLG00000036145 RLG00000036151
rosa_multiflora	Rmu_sc0000367.1_g000212
rosa_roxburghii	Rroxscaffold_1G00054610 Rroxscaffold_3G00223650 Rroxscaffold_4G00310010 Rroxscaffold_4G00326510 Rroxscaffold_5G00347060 Rroxscaffold_7G00200030
rosa_rugosa	Rorug02G0466400 Rorug04G0195600 Rorug06G0200000
rosa_samantha	Rh2DG335000 Rh4BG049400 Rh4CG056000 Rh4CG286000 Rh4DG269000 Rh6AG158900 Rh6AG260100 Rh6BG163100 Rh6BG263200 Rh6CG155300 Rh6CG155400 Rh6CG262200 Rh6CG325100 Rh6DG138200 Rh6DG148900 Rh6DG254100 Rh6DG254400 Rh6DG310900 Rh7DG185300
rosa_wichuraiana	Rw1G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	131
AciI	CCGC	3 cut(s)	131, 582, 641
AclI	AACGTT	1 cut(s)	357
AclWI	GGATC	3 cut(s)	218, 270, 576
AcoI	YGGCCR	3 cut(s)	132, 387, 818
AcsI	RAATTY	3 cut(s)	140, 293, 548
AcuI	CTGAAG	1 cut(s)	644
AfaI	GTAC	3 cut(s)	198, 732, 769
AfiI	CCNNNNNNNGG	1 cut(s)	201
AgsI	TTSAA	8 cut(s)	140, 173, 317, 325, 409, 484, 652, 856
AjnI	CCWGG	2 cut(s)	226, 278
AluBI	AGCT	8 cut(s)	305, 328, 416, 530, 611, 659, 689, 795
AluI	AGCT	8 cut(s)	305, 328, 416, 530, 611, 659, 689, 795
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	1 cut(s)	741
AlwI	GGATC	3 cut(s)	218, 270, 576
Ama87I	CYCGRG	3 cut(s)	329, 612, 738
AoxI	GGCC	3 cut(s)	132, 387, 818
ApoI	RAATTY	3 cut(s)	140, 293, 548
ArsI	GACNNNNNNTTYG	2 cut(s)	675, 707
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	91
AvaI	CYCGRG	3 cut(s)	329, 612, 738
AvaII	GGWCC	1 cut(s)	251
BalI	TGGCCA	2 cut(s)	389, 820
BanII	GRGCYC	1 cut(s)	418
BarI	GAAGNNNNNNTAC	1 cut(s)	833
Bbv12I	GWGCWC	1 cut(s)	418
BccI	CCATC	3 cut(s)	242, 781, 829
BceAI	ACGGC	2 cut(s)	119, 179
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BciT130I	CCWGG	2 cut(s)	228, 280
BcoDI	GTCTC	1 cut(s)	741
BfaI	CTAG	2 cut(s)	164, 498
BfoI	RGCGCY	1 cut(s)	68
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	3 cut(s)	132, 582, 642
BlsI	GCNGC	3 cut(s)	133, 583, 643
BmcAI	AGTACT	1 cut(s)	769
Bme1390I	CCNGG	2 cut(s)	228, 280
Bme18I	GGWCC	1 cut(s)	251
BmeT110I	CYCGRG	3 cut(s)	329, 612, 738
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	3 cut(s)	232, 253, 263
BmrFI	CCNGG	2 cut(s)	228, 280
BmsI	GCATC	1 cut(s)	568
BpmI	CTGGAG	1 cut(s)	404
Bpu10I	CCTNAGC	1 cut(s)	101
BsaBI	GATNNNNATC	1 cut(s)	786
BsaJI	CCNNGG	3 cut(s)	279, 535, 815
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse118I	RCCGGY	1 cut(s)	258
Bse1I	ACTGG	2 cut(s)	421, 598
Bse8I	GATNNNNATC	1 cut(s)	786
BseBI	CCWGG	2 cut(s)	228, 280
BseDI	CCNNGG	3 cut(s)	279, 535, 815
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseNI	ACTGG	2 cut(s)	421, 598
BseX3I	CGGCCG	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	131
Bsh1285I	CGRYCG	2 cut(s)	135, 259
BshFI	GGCC	3 cut(s)	134, 389, 820
BsiEI	CGRYCG	2 cut(s)	135, 259
BsiHKAI	GWGCWC	1 cut(s)	418
BsiHKCI	CYCGRG	3 cut(s)	329, 612, 738
BsiSI	CCGG	1 cut(s)	259
BslFI	GGGAC	2 cut(s)	464, 797
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	741
BsmFI	GGGAC	2 cut(s)	464, 797
BsnI	GGCC	3 cut(s)	134, 389, 820
BsoBI	CYCGRG	3 cut(s)	329, 612, 738
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp1407I	TGTACA	1 cut(s)	730
Bsp143I	GATC	6 cut(s)	90, 126, 175, 223, 275, 568
Bsp19I	CCATGG	1 cut(s)	815
BspACI	CCGC	3 cut(s)	131, 582, 641
BspANI	GGCC	3 cut(s)	134, 389, 820
BspFNI	CGCG	1 cut(s)	131
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	3 cut(s)	232, 253, 263
BspPI	GGATC	3 cut(s)	218, 270, 576
BspQI	GCTCTTC	1 cut(s)	696
BsrFI	RCCGGY	1 cut(s)	258
BsrGI	TGTACA	1 cut(s)	730
BsrI	ACTGG	2 cut(s)	421, 598
BssAI	RCCGGY	1 cut(s)	258
BssECI	CCNNGG	3 cut(s)	279, 535, 815
BssMI	GATC	6 cut(s)	90, 126, 175, 223, 275, 568
BssT1I	CCWWGG	2 cut(s)	535, 815
Bst2UI	CCWGG	2 cut(s)	228, 280
Bst4CI	ACNGT	4 cut(s)	97, 723, 735, 767
Bst6I	CTCTTC	2 cut(s)	620, 696
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	730
BstDEI	CTNAG	2 cut(s)	101, 507
BstDSI	CCRYGG	1 cut(s)	815
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	6 cut(s)	93, 129, 178, 226, 278, 571
BstMAI	GTCTC	1 cut(s)	741
BstMBI	GATC	6 cut(s)	90, 126, 175, 223, 275, 568
BstMCI	CGRYCG	2 cut(s)	135, 259
BstMWI	GCNNNNNNNGC	8 cut(s)	155, 164, 191, 318, 587, 608, 617, 641
BstNI	CCWGG	2 cut(s)	228, 280
BstSCI	CCNGG	2 cut(s)	226, 278
BstUI	CGCG	1 cut(s)	131
BstX2I	RGATCY	4 cut(s)	175, 223, 275, 568
BstYI	RGATCY	4 cut(s)	175, 223, 275, 568
BstZI	CGGCCG	1 cut(s)	132
BsuRI	GGCC	3 cut(s)	134, 389, 820
BtgI	CCRYGG	1 cut(s)	815
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	3 cut(s)	102, 406, 428
CciI	TCATGA	1 cut(s)	670
CfoI	GCGC	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	251
CseI	GACGC	1 cut(s)	596
Csp6I	GTAC	3 cut(s)	197, 731, 768
CviAII	CATG	4 cut(s)	391, 671, 707, 816
CviQI	GTAC	3 cut(s)	197, 731, 768
DdeI	CTNAG	2 cut(s)	101, 507
DpnI	GATC	6 cut(s)	92, 128, 177, 225, 277, 570
DpnII	GATC	6 cut(s)	90, 126, 175, 223, 275, 568
EaeI	YGGCCR	3 cut(s)	132, 387, 818
EagI	CGGCCG	1 cut(s)	132
Eam1104I	CTCTTC	2 cut(s)	620, 696
EarI	CTCTTC	2 cut(s)	620, 696
Ecl136II	GAGCTC	1 cut(s)	416
EclXI	CGGCCG	1 cut(s)	132
Eco130I	CCWWGG	2 cut(s)	535, 815
Eco24I	GRGCYC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	251
Eco52I	CGGCCG	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	644
Eco88I	CYCGRG	3 cut(s)	329, 612, 738
EcoICRI	GAGCTC	1 cut(s)	416
EcoO109I	RGGNCCY	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	226, 278
EcoT14I	CCWWGG	2 cut(s)	535, 815
EcoT38I	GRGCYC	1 cut(s)	418
ErhI	CCWWGG	2 cut(s)	535, 815
FaeI	CATG	4 cut(s)	394, 674, 710, 819
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	2 cut(s)	464, 797
FatI	CATG	4 cut(s)	390, 670, 706, 815
FauNDI	CATATG	1 cut(s)	58
Fnu4HI	GCNGC	3 cut(s)	132, 582, 642
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	3 cut(s)	132, 582, 642
FspBI	CTAG	2 cut(s)	164, 498
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	3 cut(s)	132, 582, 642
GsuI	CTGGAG	1 cut(s)	404
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	3 cut(s)	134, 389, 820
HapII	CCGG	1 cut(s)	259
HgaI	GACGC	1 cut(s)	596
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	4 cut(s)	394, 674, 710, 819
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HincII	GTYRAC	1 cut(s)	717
HindII	GTYRAC	1 cut(s)	717
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	1 cut(s)	259
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	2 cut(s)	717, 731
Hpy188I	TCNGA	5 cut(s)	239, 291, 526, 624, 792
Hpy188III	TCNNGA	4 cut(s)	471, 614, 671, 738
Hpy8I	GTNNAC	2 cut(s)	717, 731
Hpy99I	CGWCG	1 cut(s)	51
HpyAV	CCTTC	3 cut(s)	311, 437, 478
HpyCH4III	ACNGT	4 cut(s)	97, 723, 735, 767
HpyCH4IV	ACGT	2 cut(s)	357, 745
HpyCH4V	TGCA	3 cut(s)	158, 185, 394
HpyF10VI	GCNNNNNNNGC	8 cut(s)	155, 164, 191, 318, 587, 608, 617, 641
HpyF3I	CTNAG	2 cut(s)	101, 507
HpySE526I	ACGT	2 cut(s)	357, 745
Hsp92II	CATG	4 cut(s)	394, 674, 710, 819
HspAI	GCGC	1 cut(s)	65
Kzo9I	GATC	6 cut(s)	90, 126, 175, 223, 275, 568
LguI	GCTCTTC	1 cut(s)	696
LmnI	GCTCC	7 cut(s)	236, 267, 302, 342, 350, 363, 656
LweI	GCATC	1 cut(s)	568
MaeI	CTAG	2 cut(s)	164, 498
MaeII	ACGT	2 cut(s)	357, 745
MalI	GATC	6 cut(s)	92, 128, 177, 225, 277, 570
MboI	GATC	6 cut(s)	90, 126, 175, 223, 275, 568
MboII	GAAGA	3 cut(s)	185, 637, 683
MflI	RGATCY	4 cut(s)	175, 223, 275, 568
MhlI	GDGCHC	1 cut(s)	418
MlsI	TGGCCA	2 cut(s)	389, 820
MluCI	AATT	6 cut(s)	140, 159, 293, 466, 548, 674
MluNI	TGGCCA	2 cut(s)	389, 820
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	8 cut(s)	55, 123, 292, 363, 610, 621, 674, 734
Mox20I	TGGCCA	2 cut(s)	389, 820
MscI	TGGCCA	2 cut(s)	389, 820
MseI	TTAA	1 cut(s)	677
Msp20I	TGGCCA	2 cut(s)	389, 820
MspI	CCGG	1 cut(s)	259
MspR9I	CCNGG	2 cut(s)	228, 280
MvaI	CCWGG	2 cut(s)	228, 280
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	8 cut(s)	155, 164, 191, 318, 587, 608, 617, 641
NcoI	CCATGG	1 cut(s)	815
NdeI	CATATG	1 cut(s)	58
NdeII	GATC	6 cut(s)	90, 126, 175, 223, 275, 568
NlaIII	CATG	4 cut(s)	394, 674, 710, 819
NlaIV	GGNNCC	3 cut(s)	232, 253, 263
PaeR7I	CTCGAG	2 cut(s)	329, 738
PagI	TCATGA	1 cut(s)	670
PciSI	GCTCTTC	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	3 cut(s)	133, 583, 643
PpuMI	RGGWCCY	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	418
Psp1406I	AACGTT	1 cut(s)	357
Psp5II	RGGWCCY	1 cut(s)	251
Psp6I	CCWGG	2 cut(s)	226, 278
PspGI	CCWGG	2 cut(s)	226, 278
PspN4I	GGNNCC	3 cut(s)	232, 253, 263
PspPI	GGNCC	1 cut(s)	251
PspPPI	RGGWCCY	1 cut(s)	251
PspXI	VCTCGAGB	1 cut(s)	329
PsuI	RGATCY	4 cut(s)	175, 223, 275, 568
RsaI	GTAC	3 cut(s)	198, 732, 769
RsaNI	GTAC	3 cut(s)	197, 731, 768
SacI	GAGCTC	1 cut(s)	418
SapI	GCTCTTC	1 cut(s)	696
SaqAI	TTAA	1 cut(s)	677
SatI	GCNGC	3 cut(s)	132, 582, 642
Sau3AI	GATC	6 cut(s)	90, 126, 175, 223, 275, 568
Sau96I	GGNCC	1 cut(s)	251
ScaI	AGTACT	1 cut(s)	769
ScrFI	CCNGG	2 cut(s)	228, 280
SduI	GDGCHC	1 cut(s)	418
SfaNI	GCATC	1 cut(s)	568
Sfr274I	CTCGAG	2 cut(s)	329, 738
SinI	GGWCC	1 cut(s)	251
SlaI	CTCGAG	2 cut(s)	329, 738
SmlI	CTYRAG	2 cut(s)	329, 738
SmoI	CTYRAG	2 cut(s)	329, 738
Sse9I	AATT	6 cut(s)	140, 159, 293, 466, 548, 674
SsiI	CCGC	3 cut(s)	131, 582, 641
SspMI	CTAG	2 cut(s)	164, 498
SstI	GAGCTC	1 cut(s)	418
StyD4I	CCNGG	2 cut(s)	226, 278
StyI	CCWWGG	2 cut(s)	535, 815
TaaI	ACNGT	4 cut(s)	97, 723, 735, 767
TaiI	ACGT	2 cut(s)	360, 748
TaqI	TCGA	3 cut(s)	297, 330, 739
TasI	AATT	6 cut(s)	140, 159, 293, 466, 548, 674
TatI	WGTACW	2 cut(s)	730, 767
TauI	GCSGC	3 cut(s)	134, 584, 644
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	677
Tru9I	TTAA	1 cut(s)	677
TscAI	CASTG	3 cut(s)	102, 406, 428
TspDTI	ATGAA	1 cut(s)	687
TspGWI	ACGGA	2 cut(s)	254, 774
TspRI	CASTG	3 cut(s)	102, 406, 428
VpaK11BI	GGWCC	1 cut(s)	251
XapI	RAATTY	3 cut(s)	140, 293, 548
XhoI	CTCGAG	2 cut(s)	329, 738
XspI	CTAG	2 cut(s)	164, 498
ZrmI	AGTACT	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.