Rh6DG138200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001615
Physical Location & Seq
Forward (+)
19899863 .. 19916219
16357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG138200.1

Sequence Viewer

Length: 504 bp
ATGAAGCGCGCTTTCAAGAGGAAGATGAAGATCCAGCTCAACATCTTATTTCCTCATCTAAGAAGAGTGAGCAACAAGCGGGGATCTACTAAAACCCACCATTTCTCTCTAGCTAGCCGTCCCGGCCTAAGTTCCGATTCCCCAACCCCTCCTGTGTTATTTCAAAAACCGATCATTTCTGTTTTGCCGGCTCATCAAAACAATGTGTACGTTGAAGAACAAAACCCTCTTGATGCGGCAGCCGGTCGGCCTTTAGGACATGGCAGCAGCAGTGGCAGGATGATGAAACAGATGAGCACTACCACTTTTGGTGTGAAATCCAACGCGAAGGCGGCGGTGACATCTTCGCCATTTTTAGACCCGCAGGATAAAGGGGATGTGCATGCCGTGTGGTGGCAACAACCCACGCACCAACGTCCCCAACGGCCATTGCTAGTAGAAAATGAAGCTGTCAAGACCGGAACAAGCTCGATCAAAGCTTTGGGACAGTGTGCACTCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.43

Weight (kDa)

10.85

Isoelectric Point (pI)

58.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 9, 326
AciI CCGC 5 cut(s) 79, 236, 332, 335, 362
AclWI GGATC 2 cut(s) 25, 91
AcoI YGGCCR 1 cut(s) 425
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 393
AgsI TTSAA 3 cut(s) 16, 164, 215
AluBI AGCT 5 cut(s) 37, 113, 449, 468, 479
AluI AGCT 5 cut(s) 37, 113, 449, 468, 479
Alw21I GWGCWC 2 cut(s) 299, 496
Alw44I GTGCAC 1 cut(s) 492
AlwI GGATC 2 cut(s) 25, 91
AoxI GGCC 3 cut(s) 124, 248, 425
ApaLI GTGCAC 1 cut(s) 492
ApeKI GCWGC 3 cut(s) 239, 264, 267
AspLEI GCGC 2 cut(s) 9, 11
AsuC2I CCSGG 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 349
AsuNHI GCTAGC 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 496
Bbv12I GWGCWC 2 cut(s) 299, 496
BbvI GCAGC 3 cut(s) 251, 276, 279
BceAI ACGGC 3 cut(s) 102, 371, 440
BcnI CCSGG 1 cut(s) 123
BfaI CTAG 3 cut(s) 110, 114, 434
BglI GCCNNNNNGGC 1 cut(s) 123
BisI GCNGC 5 cut(s) 237, 240, 265, 268, 333
BlsI GCNGC 5 cut(s) 238, 241, 266, 269, 334
Bme1390I CCNGG 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 1 cut(s) 223
BmtI GCTAGC 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 123
BsaBI GATNNNNATC 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 458
Bsc4I CCNNNNNNNGG 1 cut(s) 393
Bse118I RCCGGY 2 cut(s) 187, 242
Bse3DI GCAATG 1 cut(s) 428
Bse8I GATNNNNATC 1 cut(s) 29
BseGI GGATG 2 cut(s) 285, 382
BseJI GATNNNNATC 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 393
BseMI GCAATG 1 cut(s) 428
BsePI GCGCGC 1 cut(s) 7
BseSI GKGCMC 1 cut(s) 496
BseXI GCAGC 3 cut(s) 251, 276, 279
Bsh1236I CGCG 2 cut(s) 9, 326
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 3 cut(s) 126, 250, 427
BsiEI CGRYCG 1 cut(s) 247
BsiHKAI GWGCWC 2 cut(s) 299, 496
BsiSI CCGG 4 cut(s) 123, 188, 243, 459
BslFI GGGAC 3 cut(s) 105, 402, 498
BslI CCNNNNNNNGG 1 cut(s) 393
BsmFI GGGAC 3 cut(s) 105, 402, 498
BsnI GGCC 3 cut(s) 126, 250, 427
Bsp1286I GDGCHC 2 cut(s) 299, 496
Bsp143I GATC 4 cut(s) 30, 83, 171, 471
BspACI CCGC 5 cut(s) 79, 236, 332, 335, 362
BspANI GGCC 3 cut(s) 126, 250, 427
BspFNI CGCG 2 cut(s) 9, 326
BspOI GCTAGC 1 cut(s) 117
BspPI GGATC 2 cut(s) 25, 91
BsrDI GCAATG 1 cut(s) 428
BsrFI RCCGGY 2 cut(s) 187, 242
BssAI RCCGGY 2 cut(s) 187, 242
BssHII GCGCGC 1 cut(s) 7
BssMI GATC 4 cut(s) 30, 83, 171, 471
Bst4CI ACNGT 1 cut(s) 489
Bst6I CTCTTC 1 cut(s) 58
BstC8I GCNNGC 4 cut(s) 9, 115, 189, 384
BstDEI CTNAG 3 cut(s) 59, 128, 497
BstF5I GGATG 2 cut(s) 285, 382
BstFNI CGCG 2 cut(s) 9, 326
BstHHI GCGC 2 cut(s) 9, 11
BstKTI GATC 4 cut(s) 33, 86, 174, 474
BstMBI GATC 4 cut(s) 30, 83, 171, 471
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 3 cut(s) 123, 273, 332
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 121
BstSLI GKGCMC 1 cut(s) 496
BstUI CGCG 2 cut(s) 9, 326
BstV1I GCAGC 3 cut(s) 251, 276, 279
BstX2I RGATCY 2 cut(s) 30, 83
BstYI RGATCY 2 cut(s) 30, 83
BsuRI GGCC 3 cut(s) 126, 250, 427
BtsCI GGATG 2 cut(s) 285, 382
BtsI GCAGTG 1 cut(s) 277
BtsIMutI CAGTG 2 cut(s) 277, 494
Cac8I GCNNGC 4 cut(s) 9, 115, 189, 384
CfoI GCGC 2 cut(s) 9, 11
Cfr10I RCCGGY 2 cut(s) 187, 242
Csp6I GTAC 1 cut(s) 208
CviAII CATG 2 cut(s) 260, 383
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 3 cut(s) 59, 128, 497
DpnI GATC 4 cut(s) 32, 85, 173, 473
DpnII GATC 4 cut(s) 30, 83, 171, 471
EaeI YGGCCR 1 cut(s) 425
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
FaeI CATG 2 cut(s) 263, 386
FaiI YATR 2 cut(s) 261, 384
FaqI GGGAC 3 cut(s) 105, 402, 498
FatI CATG 2 cut(s) 259, 382
FauI CCCGC 2 cut(s) 72, 369
Fnu4HI GCNGC 5 cut(s) 237, 240, 265, 268, 333
FokI GGATG 2 cut(s) 292, 389
Fsp4HI GCNGC 5 cut(s) 237, 240, 265, 268, 333
FspBI CTAG 3 cut(s) 110, 114, 434
GlaI GCGC 2 cut(s) 8, 10
GluI GCNGC 5 cut(s) 237, 240, 265, 268, 333
HaeIII GGCC 3 cut(s) 126, 250, 427
HapII CCGG 4 cut(s) 123, 188, 243, 459
HhaI GCGC 2 cut(s) 9, 11
Hin1II CATG 2 cut(s) 263, 386
Hin6I GCGC 2 cut(s) 7, 9
HinP1I GCGC 2 cut(s) 7, 9
HindIII AAGCTT 1 cut(s) 477
HinfI GANTC 1 cut(s) 137
HpaII CCGG 4 cut(s) 123, 188, 243, 459
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 2 cut(s) 208, 494
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 3 cut(s) 16, 230, 454
Hpy8I GTNNAC 2 cut(s) 208, 494
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4IV ACGT 2 cut(s) 210, 415
HpyCH4V TGCA 2 cut(s) 382, 494
HpyF10VI GCNNNNNNNGC 3 cut(s) 123, 273, 332
HpyF3I CTNAG 3 cut(s) 59, 128, 497
HpySE526I ACGT 2 cut(s) 210, 415
Hsp92II CATG 2 cut(s) 263, 386
HspAI GCGC 2 cut(s) 7, 9
KroI GCCGGC 1 cut(s) 187
KroNI GCCGGC 1 cut(s) 189
Kzo9I GATC 4 cut(s) 30, 83, 171, 471
LpnPI CCDG 9 cut(s) 47, 136, 165, 201, 256, 262, 350, 472, 484
Lsp1109I GCAGC 3 cut(s) 251, 276, 279
LweI GCATC 1 cut(s) 223
MaeI CTAG 3 cut(s) 110, 114, 434
MaeII ACGT 2 cut(s) 210, 415
MaeIII GTNAC 1 cut(s) 337
MalI GATC 4 cut(s) 32, 85, 173, 473
MboI GATC 4 cut(s) 30, 83, 171, 471
MboII GAAGA 5 cut(s) 34, 40, 75, 227, 336
MflI RGATCY 2 cut(s) 30, 83
MhlI GDGCHC 2 cut(s) 299, 496
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 4 cut(s) 12, 63, 159, 237
MroNI GCCGGC 1 cut(s) 187
MspI CCGG 4 cut(s) 123, 188, 243, 459
MspR9I CCNGG 1 cut(s) 123
MvnI CGCG 2 cut(s) 9, 326
MwoI GCNNNNNNNGC 3 cut(s) 123, 273, 332
NaeI GCCGGC 1 cut(s) 189
NciI CCSGG 1 cut(s) 123
NdeII GATC 4 cut(s) 30, 83, 171, 471
NgoMIV GCCGGC 1 cut(s) 187
NheI GCTAGC 1 cut(s) 113
NlaIII CATG 2 cut(s) 263, 386
NmuCI GTSAC 1 cut(s) 337
NspI RCATGY 1 cut(s) 386
PaeI GCATGC 1 cut(s) 386
PauI GCGCGC 1 cut(s) 7
PdiI GCCGGC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 5 cut(s) 238, 241, 266, 269, 334
PsuI RGATCY 2 cut(s) 30, 83
PteI GCGCGC 1 cut(s) 7
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SatI GCNGC 5 cut(s) 237, 240, 265, 268, 333
Sau3AI GATC 4 cut(s) 30, 83, 171, 471
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 2 cut(s) 299, 496
SetI ASST 8 cut(s) 39, 115, 213, 418, 451, 470, 481, 503
SfaNI GCATC 1 cut(s) 223
SphI GCATGC 1 cut(s) 386
SsiI CCGC 5 cut(s) 79, 236, 332, 335, 362
SspMI CTAG 3 cut(s) 110, 114, 434
StyD4I CCNGG 1 cut(s) 121
TaaI ACNGT 1 cut(s) 489
TaiI ACGT 2 cut(s) 213, 418
TaqI TCGA 1 cut(s) 470
TauI GCSGC 2 cut(s) 239, 335
TfiI GAWTC 1 cut(s) 137
TscAI CASTG 2 cut(s) 277, 494
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 3 cut(s) 239, 264, 267
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 4 cut(s) 17, 41, 299, 459
TspRI CASTG 2 cut(s) 277, 494
VneI GTGCAC 1 cut(s) 492
XceI RCATGY 1 cut(s) 386
XspI CTAG 3 cut(s) 110, 114, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.