Rroxscaffold_5G00347060

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001615
Physical Location & Seq
Reverse (-)
18249974 .. 18252564
2591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00347060.1

Sequence Viewer

Length: 522 bp
ATGTTAAAAGCATATGAAGAGGAAGTACTAATTGGGAAGAAGGATGAGATATATGGTGGCAGGTTATTAGCGAGTTTGCAGTTGTTTGTTATAAATGATGCGGATGAGTTTAGTGCGGTTTTGAAGCGTGAATCGAATCCGAAGATATTGATCACCACTTGCCGATTTAACTCTTCTGTTTATGCTTTTTGTTGTTTTGGTGGTTTTCGGAGGGGTCCTGCTTTTATAGAGGAACTACTTTCGGTGATCCCAAATGCGCAGTACTATAAAAGAGACACTTATGACTTGAAAAGGTACATTTTTGAAACCAAAGAGACTAAACGAGCTGAAGTAAAGGGCAAAAAGACCAAGGATTCCAAAAGATCAATGGAAACTTTGATTGATTGGATTGATAGTGAAGTCAACATGAGCAATACTTATGTACTTTTTCGAACTTATGCTCCTGTGCATTTCAGGTTTTTGAATGGTGAAGATGTAGATATAGAGGAAACAGTTCTTCGCACTCCAATATCCAAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

173

Amino Acids

20.14

Weight (kDa)

7.63

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 82 - 152 3.6e-06 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 92
Acc16I TGCGCA 1 cut(s) 258
Acc36I ACCTGC 1 cut(s) 51
AciI CCGC 2 cut(s) 101, 116
AclWI GGATC 1 cut(s) 241
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 1 cut(s) 348
AfaI GTAC 4 cut(s) 27, 263, 296, 423
AgsI TTSAA 4 cut(s) 124, 289, 305, 463
AjuI GAANNNNNNNTTGG 2 cut(s) 15, 47
AloI GAACNNNNNNTCC 2 cut(s) 424, 456
AluBI AGCT 1 cut(s) 326
AluI AGCT 1 cut(s) 326
Alw26I GTCTC 2 cut(s) 267, 308
AlwI GGATC 1 cut(s) 241
ApoI RAATTY 1 cut(s) 515
Asp700I GAANNNNTTC 1 cut(s) 492
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 3 cut(s) 145, 256, 479
AsuII TTCGAA 1 cut(s) 430
AvaII GGWCC 1 cut(s) 215
BarI GAAGNNNNNNTAC 2 cut(s) 9, 41
BclI TGATCA 1 cut(s) 150
BcoDI GTCTC 2 cut(s) 267, 308
BfaI CTAG 1 cut(s) 520
BfuAI ACCTGC 1 cut(s) 51
BmcAI AGTACT 2 cut(s) 27, 263
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 216
BmsI GCATC 1 cut(s) 88
Bpu14I TTCGAA 1 cut(s) 430
BsaBI GATNNNNATC 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 348
BsaXI ACNNNNNCTCC 2 cut(s) 424, 454
Bse8I GATNNNNATC 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 2 cut(s) 49, 109
BseJI GATNNNNATC 1 cut(s) 149
BsmAI GTCTC 2 cut(s) 267, 308
Bsp119I TTCGAA 1 cut(s) 430
Bsp143I GATC 3 cut(s) 150, 246, 362
BspACI CCGC 2 cut(s) 101, 116
BspLI GGNNCC 1 cut(s) 216
BspMI ACCTGC 1 cut(s) 51
BspPI GGATC 1 cut(s) 241
BspT104I TTCGAA 1 cut(s) 430
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 3 cut(s) 150, 246, 362
BssT1I CCWWGG 1 cut(s) 348
Bst4CI ACNGT 1 cut(s) 493
Bst6I CTCTTC 2 cut(s) 12, 178
BstBI TTCGAA 1 cut(s) 430
BstF5I GGATG 2 cut(s) 49, 109
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 3 cut(s) 153, 249, 365
BstMAI GTCTC 2 cut(s) 267, 308
BstMBI GATC 3 cut(s) 150, 246, 362
BtsCI GGATG 2 cut(s) 49, 109
BveI ACCTGC 1 cut(s) 51
CfoI GCGC 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 215
Csp6I GTAC 4 cut(s) 26, 262, 295, 422
CviAII CATG 1 cut(s) 406
CviJI RGCY 1 cut(s) 326
CviKI_1 RGCY 1 cut(s) 326
CviQI GTAC 4 cut(s) 26, 262, 295, 422
DpnI GATC 3 cut(s) 152, 248, 364
DpnII GATC 3 cut(s) 150, 246, 362
Eam1104I CTCTTC 2 cut(s) 12, 178
EarI CTCTTC 2 cut(s) 12, 178
Eco130I CCWWGG 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 1 cut(s) 409
FalI AAGNNNNNCTT 2 cut(s) 262, 294
FatI CATG 1 cut(s) 405
FauNDI CATATG 1 cut(s) 13
FbaI TGATCA 1 cut(s) 150
FokI GGATG 2 cut(s) 56, 116
FspBI CTAG 1 cut(s) 520
FspI TGCGCA 1 cut(s) 258
GlaI GCGC 1 cut(s) 258
HhaI GCGC 1 cut(s) 259
Hin1II CATG 1 cut(s) 409
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 3 cut(s) 131, 136, 353
HphI GGTGA 3 cut(s) 145, 256, 479
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 2 cut(s) 141, 210
Hpy8I GTNNAC 1 cut(s) 403
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4V TGCA 2 cut(s) 79, 448
Hsp92II CATG 1 cut(s) 409
HspAI GCGC 1 cut(s) 257
Ksp22I TGATCA 1 cut(s) 150
Kzo9I GATC 3 cut(s) 150, 246, 362
LmnI GCTCC 1 cut(s) 445
LpnPI CCDG 4 cut(s) 46, 231, 439, 456
LweI GCATC 1 cut(s) 88
MaeI CTAG 1 cut(s) 520
MalI GATC 3 cut(s) 152, 248, 364
MboI GATC 3 cut(s) 150, 246, 362
MboII GAAGA 6 cut(s) 29, 49, 154, 165, 482, 488
MluCI AATT 2 cut(s) 30, 515
MnlI CCTC 4 cut(s) 13, 204, 223, 478
MroXI GAANNNNTTC 1 cut(s) 492
MseI TTAA 2 cut(s) 5, 168
NdeI CATATG 1 cut(s) 13
NdeII GATC 3 cut(s) 150, 246, 362
NlaIII CATG 1 cut(s) 409
NlaIV GGNNCC 1 cut(s) 216
NsbI TGCGCA 1 cut(s) 258
NspV TTCGAA 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 492
PfeI GAWTC 3 cut(s) 131, 136, 353
PpuMI RGGWCCY 1 cut(s) 215
PsiI TTATAA 1 cut(s) 92
Psp5II RGGWCCY 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 1 cut(s) 215
PspPPI RGGWCCY 1 cut(s) 215
RsaI GTAC 4 cut(s) 27, 263, 296, 423
RsaNI GTAC 4 cut(s) 26, 262, 295, 422
SaqAI TTAA 2 cut(s) 5, 168
Sau3AI GATC 3 cut(s) 150, 246, 362
Sau96I GGNCC 1 cut(s) 215
ScaI AGTACT 2 cut(s) 27, 263
SetI ASST 4 cut(s) 65, 296, 328, 458
SfaNI GCATC 1 cut(s) 88
SfuI TTCGAA 1 cut(s) 430
SinI GGWCC 1 cut(s) 215
Sse9I AATT 2 cut(s) 30, 515
SsiI CCGC 2 cut(s) 101, 116
SspMI CTAG 1 cut(s) 520
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 493
TaqI TCGA 2 cut(s) 134, 430
TasI AATT 2 cut(s) 30, 515
TatI WGTACW 3 cut(s) 25, 261, 421
TfiI GAWTC 3 cut(s) 131, 136, 353
Tru1I TTAA 2 cut(s) 5, 168
Tru9I TTAA 2 cut(s) 5, 168
TspDTI ATGAA 1 cut(s) 30
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 1 cut(s) 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 364
XmnI GAANNNNTTC 1 cut(s) 492
XspI CTAG 1 cut(s) 520
ZrmI AGTACT 2 cut(s) 27, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.