Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001615

Physical Location & Seq

Genomic Coordinates Reverse (-)

6775044 .. 6778354

Gene Structure 3311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00223650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGGAGTCAAGGACAAGAAGAAGAACAAGGAGCTTGCCCGAGAGAAATTTGGAGCCTCGTTGAAAAGGGTTCGTCGCTTTAATCTCTTGCACTTTGATTCAAGTTTTGTTTTTGATTCGACCTTCAAAGATGAGAAAGAGAAAAAGAGAGAAGAAAACAATGGTGATTCGAGAAAAGTTGTTCAGATCTCTATTGAAGATAACTCGACCAAAGCTGCCAATGACAAGAAAAAGACAAAGAAAGCGAGGAAAGGAAAAGGAAAGAAGGTGAAGAACAATCAGGATTTGATGATCCCTCTAATACCGATGGTAAGTCAAAGAAAGCTAGGAAAAAGAAAAAGAAGAATCGCGATTCCTTCGAAGGTGGGAAGTTACTTGGAAAAGAGAGTGGAAGCTTTTTCGGAGGGTCCTGCTTTTATAGAGGAACTACTTTCGGTAATCCCAAATGCGCAGCACTATAAAAGAGGCACTTATGACTTGAAAAAGATTATAGAGTATGCAAATAAAAAGGAATTCACTTCTTTAATTGTTGTTCATACCAATTACGGGAACCAGATCTTAACAGTCTTTCCTATGTTAAACACTCAGGAATGTGGTCCTCGTTTTACCCTTAAATTGATCGATCTGCAGCACGGGACATTTGATCCTAGAGGCGGGGAGTTTGAGTGGGTTCACAAGAGATCAATGGAAACTTTGATTGATTGGATTGATAGTGAAGTCAACATGAGCAATACTTATGTACTTTTTCGAACTTATGCTCCTGTGCATTTCAGTATTTTGAATGGTGAAGATGTAGATATAGAGGAAACGGTTCTTCGCACTCCAATATCCAAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

279

Amino Acids

32.24

Weight (kDa)

9.73

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001615)

Species	Orthologous Gene IDs
malus_domestica	MD00G1174900.v1.1 MD01G1174900.v1.1
pyrus_communis	pycom01g02540 pycom02g08640 pycom02g21750 pycom05g02950 pycom05g07810 pycom07g08030 pycom11g21700 pycom13g23410 pycom16g13490 pycom17g16180
rosa_chinensis	RchiOBHm_Chr6g0247261 RchiOBHm_Chr7g0204481
rosa_laevigata	RLG00000007852 RLG00000013807 RLG00000018815 RLG00000023656 RLG00000036145 RLG00000036151
rosa_multiflora	Rmu_sc0000367.1_g000212
rosa_roxburghii	Rroxscaffold_1G00054610 Rroxscaffold_3G00223650 Rroxscaffold_4G00310010 Rroxscaffold_4G00326510 Rroxscaffold_5G00347060 Rroxscaffold_7G00200030
rosa_rugosa	Rorug02G0466400 Rorug04G0195600 Rorug06G0200000
rosa_samantha	Rh2DG335000 Rh4BG049400 Rh4CG056000 Rh4CG286000 Rh4DG269000 Rh6AG158900 Rh6AG260100 Rh6BG163100 Rh6BG263200 Rh6CG155300 Rh6CG155400 Rh6CG262200 Rh6CG325100 Rh6DG138200 Rh6DG148900 Rh6DG254100 Rh6DG254400 Rh6DG310900 Rh7DG185300
rosa_wichuraiana	Rw1G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	450
AccII	CGCG	1 cut(s)	350
AciI	CCGC	1 cut(s)	654
AclWI	GGATC	2 cut(s)	286, 638
AcsI	RAATTY	2 cut(s)	47, 512
AfaI	GTAC	1 cut(s)	741
AfiI	CCNNNNNNNGG	2 cut(s)	546, 653
AgsI	TTSAA	6 cut(s)	64, 102, 127, 197, 481, 781
AloI	GAACNNNNNNTCC	2 cut(s)	742, 774
AluBI	AGCT	4 cut(s)	34, 215, 325, 395
AluI	AGCT	4 cut(s)	34, 215, 325, 395
AlwI	GGATC	2 cut(s)	286, 638
Ama87I	CYCGRG	1 cut(s)	39
ApeKI	GCWGC	3 cut(s)	215, 451, 628
ApoI	RAATTY	2 cut(s)	47, 512
Asp700I	GAANNNNTTC	1 cut(s)	810
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	2 cut(s)	407, 596
AsuHPI	GGTGA	3 cut(s)	176, 280, 797
AsuII	TTCGAA	2 cut(s)	359, 748
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	2 cut(s)	407, 596
BbvI	GCAGC	3 cut(s)	202, 463, 640
BccI	CCATC	1 cut(s)	301
BfaI	CTAG	3 cut(s)	326, 648, 838
BfmI	CTRYAG	1 cut(s)	626
BglII	AGATCT	2 cut(s)	186, 555
BisI	GCNGC	3 cut(s)	216, 452, 629
BlsI	GCNGC	3 cut(s)	217, 453, 630
Bme18I	GGWCC	2 cut(s)	407, 596
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	407, 596
BmiI	GGNNCC	3 cut(s)	55, 408, 551
Bpu14I	TTCGAA	2 cut(s)	359, 748
Bsa29I	ATCGAT	1 cut(s)	621
BsaXI	ACNNNNNCTCC	4 cut(s)	650, 680, 742, 772
Bsc4I	CCNNNNNNNGG	2 cut(s)	546, 653
BseCI	ATCGAT	1 cut(s)	621
BseLI	CCNNNNNNNGG	2 cut(s)	546, 653
BseMII	CTCAG	1 cut(s)	599
BseXI	GCAGC	3 cut(s)	202, 463, 640
Bsh1236I	CGCG	1 cut(s)	350
BshVI	ATCGAT	1 cut(s)	621
BsiHKCI	CYCGRG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	649
BslI	CCNNNNNNNGG	2 cut(s)	546, 653
BsmFI	GGGAC	1 cut(s)	649
BsoBI	CYCGRG	1 cut(s)	39
Bsp119I	TTCGAA	2 cut(s)	359, 748
Bsp143I	GATC	7 cut(s)	186, 291, 555, 618, 622, 643, 680
Bsp68I	TCGCGA	1 cut(s)	350
BspACI	CCGC	1 cut(s)	654
BspCNI	CTCAG	1 cut(s)	598
BspDI	ATCGAT	1 cut(s)	621
BspFNI	CGCG	1 cut(s)	350
BspLI	GGNNCC	3 cut(s)	55, 408, 551
BspMAI	CTGCAG	1 cut(s)	630
BspPI	GGATC	2 cut(s)	286, 638
BspT104I	TTCGAA	2 cut(s)	359, 748
BssMI	GATC	7 cut(s)	186, 291, 555, 618, 622, 643, 680
Bst4CI	ACNGT	2 cut(s)	565, 811
BstBI	TTCGAA	2 cut(s)	359, 748
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	585
BstFNI	CGCG	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	7 cut(s)	189, 294, 558, 621, 625, 646, 683
BstMBI	GATC	7 cut(s)	186, 291, 555, 618, 622, 643, 680
BstSFI	CTRYAG	1 cut(s)	626
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	3 cut(s)	202, 463, 640
BstX2I	RGATCY	2 cut(s)	186, 555
BstYI	RGATCY	2 cut(s)	186, 555
Bsu15I	ATCGAT	1 cut(s)	621
BsuTUI	ATCGAT	1 cut(s)	621
BtuMI	TCGCGA	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	36
CfoI	GCGC	1 cut(s)	451
Cfr13I	GGNCC	2 cut(s)	407, 596
ClaI	ATCGAT	1 cut(s)	621
Csp6I	GTAC	1 cut(s)	740
CviAII	CATG	1 cut(s)	724
CviJI	RGCY	5 cut(s)	34, 56, 215, 325, 395
CviKI_1	RGCY	5 cut(s)	34, 56, 215, 325, 395
CviQI	GTAC	1 cut(s)	740
DdeI	CTNAG	1 cut(s)	585
DpnI	GATC	7 cut(s)	188, 293, 557, 620, 624, 645, 682
DpnII	GATC	7 cut(s)	186, 291, 555, 618, 622, 643, 680
Eco47I	GGWCC	2 cut(s)	407, 596
Eco88I	CYCGRG	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	407
EcoRI	GAATTC	1 cut(s)	512
FaeI	CATG	1 cut(s)	727
FalI	AAGNNNNNCTT	2 cut(s)	454, 486
FaqI	GGGAC	1 cut(s)	649
FatI	CATG	1 cut(s)	723
FauI	CCCGC	1 cut(s)	647
Fnu4HI	GCNGC	3 cut(s)	216, 452, 629
Fsp4HI	GCNGC	3 cut(s)	216, 452, 629
FspBI	CTAG	3 cut(s)	326, 648, 838
FspI	TGCGCA	1 cut(s)	450
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	3 cut(s)	216, 452, 629
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	1 cut(s)	727
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HindIII	AAGCTT	1 cut(s)	393
HinfI	GANTC	6 cut(s)	6, 98, 116, 167, 345, 352
HphI	GGTGA	3 cut(s)	176, 280, 797
Hpy166II	GTNNAC	2 cut(s)	673, 721
Hpy188I	TCNGA	2 cut(s)	186, 403
Hpy188III	TCNNGA	4 cut(s)	171, 281, 349, 587
Hpy8I	GTNNAC	2 cut(s)	673, 721
Hpy99I	CGWCG	1 cut(s)	78
HpyAV	CCTTC	4 cut(s)	133, 259, 355, 366
HpyCH4III	ACNGT	2 cut(s)	565, 811
HpyCH4V	TGCA	4 cut(s)	91, 500, 628, 766
HpyF3I	CTNAG	1 cut(s)	585
Hsp92II	CATG	1 cut(s)	727
HspAI	GCGC	1 cut(s)	449
Kzo9I	GATC	7 cut(s)	186, 291, 555, 618, 622, 643, 680
LmnI	GCTCC	3 cut(s)	31, 53, 763
LpnPI	CCDG	5 cut(s)	266, 423, 566, 572, 774
Lsp1109I	GCAGC	3 cut(s)	202, 463, 640
MaeI	CTAG	3 cut(s)	326, 648, 838
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	7 cut(s)	188, 293, 557, 620, 624, 645, 682
MboI	GATC	7 cut(s)	186, 291, 555, 618, 622, 643, 680
MboII	GAAGA	8 cut(s)	31, 34, 164, 209, 283, 354, 800, 806
MflI	RGATCY	2 cut(s)	186, 555
MluCI	AATT	5 cut(s)	47, 512, 525, 541, 614
MlyI	GAGTC	1 cut(s)	15
MnlI	CCTC	9 cut(s)	67, 240, 306, 397, 415, 458, 609, 644, 796
MroXI	GAANNNNTTC	1 cut(s)	810
MseI	TTAA	5 cut(s)	81, 524, 560, 578, 612
MvnI	CGCG	1 cut(s)	350
NdeII	GATC	7 cut(s)	186, 291, 555, 618, 622, 643, 680
NlaIII	CATG	1 cut(s)	727
NlaIV	GGNNCC	3 cut(s)	55, 408, 551
NruI	TCGCGA	1 cut(s)	350
NsbI	TGCGCA	1 cut(s)	450
NspV	TTCGAA	2 cut(s)	359, 748
PdmI	GAANNNNTTC	1 cut(s)	810
PfeI	GAWTC	5 cut(s)	98, 116, 167, 345, 352
PkrI	GCNGC	3 cut(s)	217, 453, 630
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PpuMI	RGGWCCY	1 cut(s)	407
Psp5II	RGGWCCY	1 cut(s)	407
PspN4I	GGNNCC	3 cut(s)	55, 408, 551
PspPI	GGNCC	2 cut(s)	407, 596
PspPPI	RGGWCCY	1 cut(s)	407
PstI	CTGCAG	1 cut(s)	630
PsuI	RGATCY	2 cut(s)	186, 555
RruI	TCGCGA	1 cut(s)	350
RsaI	GTAC	1 cut(s)	741
RsaNI	GTAC	1 cut(s)	740
SaqAI	TTAA	5 cut(s)	81, 524, 560, 578, 612
SatI	GCNGC	3 cut(s)	216, 452, 629
Sau3AI	GATC	7 cut(s)	186, 291, 555, 618, 622, 643, 680
Sau96I	GGNCC	2 cut(s)	407, 596
SchI	GAGTC	1 cut(s)	15
SetI	ASST	7 cut(s)	36, 125, 217, 270, 327, 366, 397
SfcI	CTRYAG	1 cut(s)	626
SfuI	TTCGAA	2 cut(s)	359, 748
SinI	GGWCC	2 cut(s)	407, 596
Sse9I	AATT	5 cut(s)	47, 512, 525, 541, 614
SsiI	CCGC	1 cut(s)	654
SspMI	CTAG	3 cut(s)	326, 648, 838
TaaI	ACNGT	2 cut(s)	565, 811
TaqI	TCGA	6 cut(s)	119, 170, 206, 359, 621, 748
TasI	AATT	5 cut(s)	47, 512, 525, 541, 614
TatI	WGTACW	1 cut(s)	739
TfiI	GAWTC	5 cut(s)	98, 116, 167, 345, 352
Tru1I	TTAA	5 cut(s)	81, 524, 560, 578, 612
Tru9I	TTAA	5 cut(s)	81, 524, 560, 578, 612
TseI	GCWGC	3 cut(s)	215, 451, 628
TspDTI	ATGAA	1 cut(s)	524
VpaK11BI	GGWCC	2 cut(s)	407, 596
XapI	RAATTY	2 cut(s)	47, 512
XmnI	GAANNNNTTC	1 cut(s)	810
XspI	CTAG	3 cut(s)	326, 648, 838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.