Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001615

Physical Location & Seq

Genomic Coordinates Reverse (-)

14322138 .. 14322749

Gene Structure 612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G006920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAAGAGAAGAAGGCTTGTAGAAGATACCATGATATGGAGTATGCTTAACATATTGCAAAATGCGCTTGACTGCAACCCAATGTGTAGAAGTGGGACGATGCATAAATTGGCAGACCTGGTTGACGGCGAAAGAGAGATCAGGACGGGTGAAAGTGAGATACTGAAGGGCACCCACAACACTACGGTTACCATCATGCGCACTAAGACGTTGACGAGAAGCAGGTGTAGAAACTGGTTTGACATCAAGCATGTTGGTACGCTTCAAAAGATCAAGTGCATATTTAGACTGAGACAAAGAAAGTCCTGTAGAAGTACGAACAGCCTCAACCCCCAAAAAGGCATAGCGTTTTTCCAAGGCCAGCCAAGTAGAACGAGAAGAAGTAGAGCGGGCGACAGTTGCGAGGACAGAAGGAGTGAGGGAGCCATTGATCCAACTGAGAATCATTTGATCTTTGAGAATCCATGCTTCATACTCGGGGTTCACAGCATCAATTGCTTTCCCTTTATCATCCTTGAGATGAGCAGGAGGACATGGAAGACTGCCGTCAGCGATGCCCATCAGACCACGACTCTTCAGGATGGGAACAATCTGAGCAAGCAGAGAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

203

Amino Acids

23.38

Weight (kDa)

10.0

Isoelectric Point (pI)

65.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001615)

Species	Orthologous Gene IDs
malus_domestica	MD00G1174900.v1.1 MD01G1174900.v1.1
pyrus_communis	pycom01g02540 pycom02g08640 pycom02g21750 pycom05g02950 pycom05g07810 pycom07g08030 pycom11g21700 pycom13g23410 pycom16g13490 pycom17g16180
rosa_chinensis	RchiOBHm_Chr6g0247261 RchiOBHm_Chr7g0204481
rosa_laevigata	RLG00000007852 RLG00000013807 RLG00000018815 RLG00000023656 RLG00000036145 RLG00000036151
rosa_multiflora	Rmu_sc0000367.1_g000212
rosa_roxburghii	Rroxscaffold_1G00054610 Rroxscaffold_3G00223650 Rroxscaffold_4G00310010 Rroxscaffold_4G00326510 Rroxscaffold_5G00347060 Rroxscaffold_7G00200030
rosa_rugosa	Rorug02G0466400 Rorug04G0195600 Rorug06G0200000
rosa_samantha	Rh2DG335000 Rh4BG049400 Rh4CG056000 Rh4CG286000 Rh4DG269000 Rh6AG158900 Rh6AG260100 Rh6BG163100 Rh6BG263200 Rh6CG155300 Rh6CG155400 Rh6CG262200 Rh6CG325100 Rh6DG138200 Rh6DG148900 Rh6DG254100 Rh6DG254400 Rh6DG310900 Rh7DG185300
rosa_wichuraiana	Rw1G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	213
Acc16I	TGCGCA	1 cut(s)	200
Acc36I	ACCTGC	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	170
AccB7I	CCANNNNNTGG	1 cut(s)	36
AccBSI	CCGCTC	1 cut(s)	389
AciI	CCGC	1 cut(s)	389
AclWI	GGATC	1 cut(s)	425
AcuI	CTGAAG	2 cut(s)	185, 560
AfaI	GTAC	2 cut(s)	259, 316
AfiI	CCNNNNNNNGG	2 cut(s)	36, 338
AgsI	TTSAA	1 cut(s)	266
AjnI	CCWGG	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	1 cut(s)	425
Ama87I	CYCGRG	1 cut(s)	476
AoxI	GGCC	1 cut(s)	358
AspLEI	GCGC	2 cut(s)	67, 201
AsuHPI	GGTGA	1 cut(s)	161
AvaI	CYCGRG	1 cut(s)	476
BaeGI	GKGCMC	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	545
BccI	CCATC	3 cut(s)	200, 567, 575
BceAI	ACGGC	2 cut(s)	142, 530
BciT130I	CCWGG	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	286
BfmI	CTRYAG	1 cut(s)	307
BfuAI	ACCTGC	1 cut(s)	213
Bme1390I	CCNGG	1 cut(s)	119
BmeT110I	CYCGRG	1 cut(s)	476
BmiI	GGNNCC	2 cut(s)	172, 424
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	3 cut(s)	90, 498, 544
BoxI	GACNNNNGTC	1 cut(s)	545
BpiI	GAAGAC	1 cut(s)	545
BpuEI	CTTGAG	1 cut(s)	536
BsaBI	GATNNNNATC	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 338
Bse1I	ACTGG	1 cut(s)	239
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	2 cut(s)	510, 586
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	2 cut(s)	36, 338
BseMII	CTCAG	3 cut(s)	281, 429, 584
BseNI	ACTGG	1 cut(s)	239
BseSI	GKGCMC	1 cut(s)	173
BshFI	GGCC	1 cut(s)	360
BshNI	GGYRCC	1 cut(s)	170
BsiHKCI	CYCGRG	1 cut(s)	476
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	2 cut(s)	36, 338
BsmAI	GTCTC	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	360
BsoBI	CYCGRG	1 cut(s)	476
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	4 cut(s)	138, 270, 430, 450
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	3 cut(s)	282, 430, 585
BspLI	GGNNCC	2 cut(s)	172, 424
BspMI	ACCTGC	1 cut(s)	213
BspPI	GGATC	1 cut(s)	425
BspT107I	GGYRCC	1 cut(s)	170
BsrBI	CCGCTC	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	4 cut(s)	138, 270, 430, 450
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	187, 398
Bst6I	CTCTTC	1 cut(s)	579
BstAPI	GCANNNNNTGC	1 cut(s)	495
BstC8I	GCNNGC	3 cut(s)	362, 391, 599
BstDEI	CTNAG	4 cut(s)	204, 290, 438, 593
BstEII	GGTNACC	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	510, 586
BstHHI	GCGC	2 cut(s)	67, 201
BstKTI	GATC	4 cut(s)	141, 273, 433, 453
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	4 cut(s)	138, 270, 430, 450
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 399, 495
BstNI	CCWGG	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	254
BstPAI	GACNNNNGTC	1 cut(s)	545
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	1 cut(s)	307
BstSLI	GKGCMC	1 cut(s)	173
BstV2I	GAAGAC	1 cut(s)	545
BsuRI	GGCC	1 cut(s)	360
BtgZI	GCGATG	1 cut(s)	567
BtsCI	GGATG	2 cut(s)	510, 586
BveI	ACCTGC	1 cut(s)	213
Cac8I	GCNNGC	3 cut(s)	362, 391, 599
CfoI	GCGC	2 cut(s)	67, 201
CsiI	ACCWGGT	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	258, 315
CviAII	CATG	5 cut(s)	31, 196, 251, 465, 534
CviJI	RGCY	5 cut(s)	16, 324, 360, 364, 425
CviKI_1	RGCY	5 cut(s)	16, 324, 360, 364, 425
CviQI	GTAC	2 cut(s)	258, 315
DdeI	CTNAG	4 cut(s)	204, 290, 438, 593
DpnI	GATC	4 cut(s)	140, 272, 432, 452
DpnII	GATC	4 cut(s)	138, 270, 430, 450
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
Eco130I	CCWWGG	1 cut(s)	355
Eco57I	CTGAAG	2 cut(s)	185, 560
Eco88I	CYCGRG	1 cut(s)	476
Eco91I	GGTNACC	1 cut(s)	187
EcoO65I	GGTNACC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	355
EcoT22I	ATGCAT	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	5 cut(s)	34, 199, 254, 468, 537
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	5 cut(s)	30, 195, 250, 464, 533
FauI	CCCGC	1 cut(s)	382
FokI	GGATG	2 cut(s)	497, 593
FspAI	RTGCGCAY	1 cut(s)	200
FspI	TGCGCA	1 cut(s)	200
GlaI	GCGC	2 cut(s)	66, 200
HaeIII	GGCC	1 cut(s)	360
HhaI	GCGC	2 cut(s)	67, 201
Hin1II	CATG	5 cut(s)	34, 199, 254, 468, 537
Hin6I	GCGC	2 cut(s)	65, 199
HinP1I	GCGC	2 cut(s)	65, 199
HincII	GTYRAC	2 cut(s)	124, 213
HindII	GTYRAC	2 cut(s)	124, 213
HinfI	GANTC	3 cut(s)	442, 460, 571
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	3 cut(s)	124, 213, 484
Hpy188I	TCNGA	2 cut(s)	564, 594
Hpy188III	TCNNGA	2 cut(s)	142, 578
Hpy8I	GTNNAC	3 cut(s)	124, 213, 484
HpyAV	CCTTC	3 cut(s)	6, 160, 405
HpyCH4III	ACNGT	2 cut(s)	187, 398
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	4 cut(s)	58, 75, 103, 279
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 399, 495
HpyF3I	CTNAG	4 cut(s)	204, 290, 438, 593
HpySE526I	ACGT	1 cut(s)	209
Hsp92II	CATG	5 cut(s)	34, 199, 254, 468, 537
HspAI	GCGC	2 cut(s)	65, 199
Kzo9I	GATC	4 cut(s)	138, 270, 430, 450
LmnI	GCTCC	1 cut(s)	422
LpnPI	CCDG	9 cut(s)	104, 127, 131, 208, 220, 319, 374, 511, 563
LweI	GCATC	3 cut(s)	90, 498, 544
MabI	ACCWGGT	1 cut(s)	117
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	4 cut(s)	140, 272, 432, 452
MbiI	CCGCTC	1 cut(s)	389
MboI	GATC	4 cut(s)	138, 270, 430, 450
MboII	GAAGA	6 cut(s)	16, 21, 35, 390, 550, 566
MfeI	CAATTG	1 cut(s)	493
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	2 cut(s)	107, 493
MlyI	GAGTC	1 cut(s)	565
MmeI	TCCRAC	1 cut(s)	458
MnlI	CCTC	5 cut(s)	335, 397, 412, 522, 599
Mph1103I	ATGCAT	1 cut(s)	105
MseI	TTAA	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	119
MunI	CAATTG	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	3 cut(s)	64, 399, 495
NdeII	GATC	4 cut(s)	138, 270, 430, 450
NlaIII	CATG	5 cut(s)	34, 199, 254, 468, 537
NlaIV	GGNNCC	2 cut(s)	172, 424
NsbI	TGCGCA	1 cut(s)	200
NsiI	ATGCAT	1 cut(s)	105
NspI	RCATGY	1 cut(s)	254
PaqCI	CACCTGC	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	442, 460
PflMI	CCANNNNNTGG	1 cut(s)	36
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
PshAI	GACNNNNGTC	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	117
PspEI	GGTNACC	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	172, 424
RsaI	GTAC	2 cut(s)	259, 316
RsaNI	GTAC	2 cut(s)	258, 315
SaqAI	TTAA	1 cut(s)	48
Sau3AI	GATC	4 cut(s)	138, 270, 430, 450
SchI	GAGTC	1 cut(s)	565
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	3 cut(s)	120, 212, 227
SexAI	ACCWGGT	1 cut(s)	117
SfaNI	GCATC	3 cut(s)	90, 498, 544
SfcI	CTRYAG	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	2 cut(s)	107, 493
SsiI	CCGC	1 cut(s)	389
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	2 cut(s)	187, 398
TaiI	ACGT	1 cut(s)	212
TasI	AATT	2 cut(s)	107, 493
TfiI	GAWTC	2 cut(s)	442, 460
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TspDTI	ATGAA	2 cut(s)	17, 460
Van91I	CCANNNNNTGG	1 cut(s)	36
XceI	RCATGY	1 cut(s)	254
Zsp2I	ATGCAT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.