Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001615

Physical Location & Seq

Genomic Coordinates Reverse (-)

17241959 .. 17242261

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG185300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGATCACCACCCCAGCCAAACAACACCTTCTCCAGATTGGATCCACGAAAACCAACCCAGATCTGGTTCGTCCAAGAAGAGCCCGACCGCGCCGCAACGACCATGGCACCCCCGAGCCGCCTCCTACCTCACAACCCCAGTCCCCTCGCCATTAGGGCTGAAGATTCGCCAGATCATAGTGCTTAGGCTTCCACCTCCACTTGACGAGTTCGCAACTGTTGGATTTGTTGCTGGAAATGCAATTCCAGCCCTTGAAGATCTCTTTGCAGGTGTTGTCGTACTTGGGAGGAAGTGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

100

Amino Acids

10.91

Weight (kDa)

9.51

Isoelectric Point (pI)

57.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001615)

Species	Orthologous Gene IDs
malus_domestica	MD00G1174900.v1.1 MD01G1174900.v1.1
pyrus_communis	pycom01g02540 pycom02g08640 pycom02g21750 pycom05g02950 pycom05g07810 pycom07g08030 pycom11g21700 pycom13g23410 pycom16g13490 pycom17g16180
rosa_chinensis	RchiOBHm_Chr6g0247261 RchiOBHm_Chr7g0204481
rosa_laevigata	RLG00000007852 RLG00000013807 RLG00000018815 RLG00000023656 RLG00000036145 RLG00000036151
rosa_multiflora	Rmu_sc0000367.1_g000212
rosa_roxburghii	Rroxscaffold_1G00054610 Rroxscaffold_3G00223650 Rroxscaffold_4G00310010 Rroxscaffold_4G00326510 Rroxscaffold_5G00347060 Rroxscaffold_7G00200030
rosa_rugosa	Rorug02G0466400 Rorug04G0195600 Rorug06G0200000
rosa_samantha	Rh2DG335000 Rh4BG049400 Rh4CG056000 Rh4CG286000 Rh4DG269000 Rh6AG158900 Rh6AG260100 Rh6BG163100 Rh6BG263200 Rh6CG155300 Rh6CG155400 Rh6CG262200 Rh6CG325100 Rh6DG138200 Rh6DG148900 Rh6DG254100 Rh6DG254400 Rh6DG310900 Rh7DG185300
rosa_wichuraiana	Rw1G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	108
AccII	CGCG	1 cut(s)	92
AciI	CCGC	3 cut(s)	90, 95, 120
AclWI	GGATC	3 cut(s)	12, 37, 50
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	257
AlwI	GGATC	3 cut(s)	12, 37, 50
Ama87I	CYCGRG	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	94
AvaI	CYCGRG	1 cut(s)	114
BamHI	GGATCC	1 cut(s)	42
BanI	GGYRCC	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	260
BglI	GCCNNNNNGGC	1 cut(s)	157
BglII	AGATCT	2 cut(s)	62, 259
BisI	GCNGC	2 cut(s)	95, 120
BlsI	GCNGC	2 cut(s)	96, 121
BmeT110I	CYCGRG	1 cut(s)	114
BmiI	GGNNCC	2 cut(s)	44, 110
BmrI	ACTGGG	1 cut(s)	134
BmuI	ACTGGG	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	18
Bpu10I	CCTNAGC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	104
BsaXI	ACNNNNNCTCC	3 cut(s)	16, 46, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	104
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	140
BseYI	CCCAGC	1 cut(s)	14
Bsh1236I	CGCG	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	90
BshNI	GGYRCC	1 cut(s)	108
BsiEI	CGRYCG	1 cut(s)	90
BsiHKCI	CYCGRG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	5 cut(s)	4, 42, 62, 174, 259
Bsp19I	CCATGG	1 cut(s)	104
BspACI	CCGC	3 cut(s)	90, 95, 120
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	44, 110
BspMI	ACCTGC	1 cut(s)	260
BspPI	GGATC	3 cut(s)	12, 37, 50
BspQI	GCTCTTC	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	104
BssMI	GATC	5 cut(s)	4, 42, 62, 174, 259
BssT1I	CCWWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	185
BstDSI	CCRYGG	1 cut(s)	104
BstFNI	CGCG	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	5 cut(s)	7, 45, 65, 177, 262
BstMBI	GATC	5 cut(s)	4, 42, 62, 174, 259
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	3 cut(s)	157, 239, 248
BstUI	CGCG	1 cut(s)	92
BstX2I	RGATCY	3 cut(s)	42, 62, 259
BstYI	RGATCY	3 cut(s)	42, 62, 259
BtgI	CCRYGG	1 cut(s)	104
BveI	ACCTGC	1 cut(s)	260
CfoI	GCGC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	1 cut(s)	105
CviJI	RGCY	6 cut(s)	18, 84, 119, 160, 190, 251
CviKI_1	RGCY	6 cut(s)	18, 84, 119, 160, 190, 251
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	5 cut(s)	6, 44, 64, 176, 261
DpnII	GATC	5 cut(s)	4, 42, 62, 174, 259
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	1 cut(s)	108
FaiI	YATR	2 cut(s)	106, 179
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	1 cut(s)	104
Fnu4HI	GCNGC	2 cut(s)	95, 120
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	95, 120
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	2 cut(s)	95, 120
GsaI	CCCAGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	18
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	1 cut(s)	108
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HinfI	GANTC	1 cut(s)	166
Hpy188I	TCNGA	1 cut(s)	302
Hpy188III	TCNNGA	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	39
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4V	TGCA	2 cut(s)	242, 269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	157, 239, 248
HpyF3I	CTNAG	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	108
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	5 cut(s)	4, 42, 62, 174, 259
LguI	GCTCTTC	1 cut(s)	74
LpnPI	CCDG	9 cut(s)	28, 48, 51, 73, 153, 185, 219, 255, 261
MalI	GATC	5 cut(s)	6, 44, 64, 176, 261
MboI	GATC	5 cut(s)	4, 42, 62, 174, 259
MboII	GAAGA	3 cut(s)	91, 175, 269
MflI	RGATCY	3 cut(s)	42, 62, 259
MhlI	GDGCHC	1 cut(s)	86
MluCI	AATT	1 cut(s)	243
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	5 cut(s)	133, 140, 157, 207, 282
MroXI	GAANNNNTTC	1 cut(s)	296
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	3 cut(s)	157, 239, 248
NcoI	CCATGG	1 cut(s)	104
NdeII	GATC	5 cut(s)	4, 42, 62, 174, 259
NlaIII	CATG	1 cut(s)	108
NlaIV	GGNNCC	2 cut(s)	44, 110
PaqCI	CACCTGC	1 cut(s)	260
PciSI	GCTCTTC	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	166
PkrI	GCNGC	2 cut(s)	96, 121
PspFI	CCCAGC	1 cut(s)	14
PspN4I	GGNNCC	2 cut(s)	44, 110
PsuI	RGATCY	3 cut(s)	42, 62, 259
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
SapI	GCTCTTC	1 cut(s)	74
SatI	GCNGC	2 cut(s)	95, 120
Sau3AI	GATC	5 cut(s)	4, 42, 62, 174, 259
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	4 cut(s)	31, 132, 199, 274
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	3 cut(s)	90, 95, 120
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	220
TasI	AATT	1 cut(s)	243
TauI	GCSGC	2 cut(s)	97, 122
TfiI	GAWTC	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.