RchiOBHm_Chr6g0247261

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001615
Physical Location & Seq
Reverse (-)
3115176 .. 3124530
9355 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22164

Sequence Viewer

Length: 198 bp
ATGCCAGGCCTAATTCGGGTCGTGGATCCAGGTTCCATTGGAGTAGTCGCAGGACCCGGGCGGCTCCGTCGGGTCGGATCCGGGGGGATTCCGGAATTGGAGGGAGCTGTGAGGTTGGGAGGGAACGGAGGATGTGTTTCTAATGTAAGAGAGAACGGCGAAGATGGAAATGAAGCAGAGGAGGGAGAGGAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

6.56

Weight (kDa)

4.64

Isoelectric Point (pI)

32.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 91
AciI CCGC 1 cut(s) 61
AclWI GGATC 4 cut(s) 20, 33, 72, 85
AfiI CCNNNNNNNGG 1 cut(s) 16
AjnI CCWGG 2 cut(s) 4, 28
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
AlwI GGATC 4 cut(s) 20, 33, 72, 85
Ama87I CYCGRG 1 cut(s) 56
Aor13HI TCCGGA 1 cut(s) 91
AoxI GGCC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 53
AsuC2I CCSGG 3 cut(s) 57, 58, 82
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 1 cut(s) 53
BamHI GGATCC 2 cut(s) 25, 77
BccI CCATC 1 cut(s) 158
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 2 cut(s) 6, 30
BcnI CCSGG 3 cut(s) 57, 58, 82
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
Bme1390I CCNGG 5 cut(s) 6, 30, 57, 58, 82
Bme18I GGWCC 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 5 cut(s) 27, 34, 55, 65, 79
BmrFI CCNGG 5 cut(s) 6, 30, 57, 58, 82
BpuMI CCSGG 3 cut(s) 57, 58, 82
BsaJI CCNNGG 2 cut(s) 56, 81
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 1 cut(s) 16
BseAI TCCGGA 1 cut(s) 91
BseBI CCWGG 2 cut(s) 6, 30
BseDI CCNNGG 2 cut(s) 56, 81
BseGI GGATG 1 cut(s) 137
BseLI CCNNNNNNNGG 1 cut(s) 16
BseRI GAGGAG 1 cut(s) 194
BshFI GGCC 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 3 cut(s) 57, 81, 92
BslI CCNNNNNNNGG 1 cut(s) 16
BsnI GGCC 1 cut(s) 9
BsoBI CYCGRG 1 cut(s) 56
Bsp13I TCCGGA 1 cut(s) 91
Bsp143I GATC 2 cut(s) 25, 77
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 9
BspEI TCCGGA 1 cut(s) 91
BspLI GGNNCC 5 cut(s) 27, 34, 55, 65, 79
BspPI GGATC 4 cut(s) 20, 33, 72, 85
BssECI CCNNGG 2 cut(s) 56, 81
BssMI GATC 2 cut(s) 25, 77
Bst2UI CCWGG 2 cut(s) 6, 30
BstF5I GGATG 1 cut(s) 137
BstKTI GATC 2 cut(s) 28, 80
BstMBI GATC 2 cut(s) 25, 77
BstNI CCWGG 2 cut(s) 6, 30
BstSCI CCNGG 5 cut(s) 4, 28, 55, 56, 80
BstX2I RGATCY 2 cut(s) 25, 77
BstYI RGATCY 2 cut(s) 25, 77
BsuRI GGCC 1 cut(s) 9
BtsCI GGATG 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 53
Cfr9I CCCGGG 1 cut(s) 56
CviJI RGCY 3 cut(s) 9, 64, 107
CviKI_1 RGCY 3 cut(s) 9, 64, 107
DpnI GATC 2 cut(s) 27, 79
DpnII GATC 2 cut(s) 25, 77
Eco147I AGGCCT 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 53
Eco88I CYCGRG 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 53
EcoRII CCWGG 2 cut(s) 4, 28
Fnu4HI GCNGC 1 cut(s) 62
FokI GGATG 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 62
GluI GCNGC 1 cut(s) 62
HaeIII GGCC 1 cut(s) 9
HapII CCGG 3 cut(s) 57, 81, 92
HinfI GANTC 1 cut(s) 88
HpaII CCGG 3 cut(s) 57, 81, 92
Hpy188I TCNGA 1 cut(s) 77
Hpy188III TCNNGA 1 cut(s) 92
Hpy99I CGWCG 1 cut(s) 72
Kpn2I TCCGGA 1 cut(s) 91
Kzo9I GATC 2 cut(s) 25, 77
LmnI GCTCC 2 cut(s) 69, 104
LpnPI CCDG 7 cut(s) 15, 18, 36, 42, 70, 94, 105
MalI GATC 2 cut(s) 27, 79
MboI GATC 2 cut(s) 25, 77
MboII GAAGA 1 cut(s) 173
MflI RGATCY 2 cut(s) 25, 77
MluCI AATT 2 cut(s) 12, 95
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 8 cut(s) 94, 105, 113, 122, 172, 175, 181, 186
MroI TCCGGA 1 cut(s) 91
MspI CCGG 3 cut(s) 57, 81, 92
MspR9I CCNGG 5 cut(s) 6, 30, 57, 58, 82
MvaI CCWGG 2 cut(s) 6, 30
NciI CCSGG 3 cut(s) 57, 58, 82
NdeII GATC 2 cut(s) 25, 77
NlaIV GGNNCC 5 cut(s) 27, 34, 55, 65, 79
PceI AGGCCT 1 cut(s) 9
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 63
PpuMI RGGWCCY 1 cut(s) 53
Psp5II RGGWCCY 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 4, 28
PspGI CCWGG 2 cut(s) 4, 28
PspN4I GGNNCC 5 cut(s) 27, 34, 55, 65, 79
PspPI GGNCC 1 cut(s) 53
PspPPI RGGWCCY 1 cut(s) 53
PsuI RGATCY 2 cut(s) 25, 77
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 2 cut(s) 25, 77
Sau96I GGNCC 1 cut(s) 53
ScrFI CCNGG 5 cut(s) 6, 30, 57, 58, 82
SetI ASST 4 cut(s) 34, 109, 116, 197
SinI GGWCC 1 cut(s) 53
SmaI CCCGGG 1 cut(s) 58
Sse9I AATT 2 cut(s) 12, 95
SseBI AGGCCT 1 cut(s) 9
SsiI CCGC 1 cut(s) 61
StuI AGGCCT 1 cut(s) 9
StyD4I CCNGG 5 cut(s) 4, 28, 55, 56, 80
TasI AATT 2 cut(s) 12, 95
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 186
TspGWI ACGGA 2 cut(s) 56, 141
TspMI CCCGGG 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 53
XmaI CCCGGG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.