RLG00000023656

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001615
Physical Location & Seq
Forward (+)
26723662 .. 26726477
2816 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023656

Sequence Viewer

Length: 936 bp
ATGGGAGTCAAGGACAAGAAGAAGAACAAGGAGCTTGCCCAGAGAAATTTGGAGCCTGTTGAAAAGGATAAAAGTTCAGGACCTTCAGAGATGAGAAAGAGAAAAAGAGAGAAGAAAACAATGAATTTTGCATTCAAAATGAACTCAATGCGGTTTGCTCTTGTCATTTCACTAGATAACTCGACCAAAGCGGCCAATGACAAGAAAAAGACAAAGAAACTGAGGAAAGGAAAAGGAAAGAAGACGATTAAGCCGCAGATGATCAGAGCCAATTCAAAGTTCAGGGAGAGACTGCAAGAAGTGCTGAAATGGTGCTCAATGAAGATGACTTTGAAGAGGGAAGTACTAATTGGGAAGAAGGATGAGATATATGGTGGTAGGTTATTAGCGAGTTTGCAGTTGTTTGTTAGAAATGATGCGGATGAGTTTAGTGCGGTTTTGAAGCGTGAATCGAATCCGAAGATATTGATCACCACTTGCCGATTTAACTCTTCTAGGGGTCTTGCTTTTATAGAGGAACTACTTTCGGTGATCCCAAATGCGCAGTACTATAAAAGAGGCACTTATGACTTGAAAAAGATTATAGAGTATGCAAATAAAAAGGAATTCACTTCTTTAATTGTTGTTCATACCAATCACCGGGAACCAGGTTGTGTAAAGGGCAAAAAGACCAAGGATTCCAAAGCTGACGCTATTACTGAAGCAAAACCATTTGCGCGCCTACAGCACGAGACATTTGATCCTAGAGGCGGGGAGTTTGAGTGGGTTCACAAGAGATCAATGGAAACTTTGATTGATTGGATTGATAGTGAAGTCAACATGAGCAATACTTATTTACTCTTTCGAACTTATGCTCTTGTGCATTTCAGGATTTTGAATGGTGAAGATGTAGATATAGAGGAAACAGTTCTTCGCACTCCAATATCCAAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

312

Amino Acids

36.07

Weight (kDa)

9.92

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 543
AccII CGCG 1 cut(s) 718
AciI CCGC 6 cut(s) 151, 191, 254, 419, 434, 750
AclWI GGATC 2 cut(s) 526, 734
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 3 cut(s) 46, 124, 605
AcuI CTGAAG 2 cut(s) 69, 720
AfaI GTAC 2 cut(s) 345, 548
AfiI CCNNNNNNNGG 2 cut(s) 639, 749
AgsI TTSAA 7 cut(s) 62, 136, 276, 334, 442, 574, 877
AjnI CCWGG 1 cut(s) 646
AjuI GAANNNNNNNTTGG 4 cut(s) 263, 295, 333, 365
AluBI AGCT 2 cut(s) 34, 686
AluI AGCT 2 cut(s) 34, 686
Alw21I GWGCWC 1 cut(s) 317
Alw26I GTCTC 2 cut(s) 283, 725
AlwI GGATC 2 cut(s) 526, 734
AoxI GGCC 1 cut(s) 192
ApoI RAATTY 3 cut(s) 46, 124, 605
Asp700I GAANNNNTTC 1 cut(s) 906
AspLEI GCGC 3 cut(s) 544, 718, 720
AspS9I GGNCC 1 cut(s) 80
AsuC2I CCSGG 1 cut(s) 641
AsuHPI GGTGA 4 cut(s) 463, 541, 629, 893
AsuII TTCGAA 1 cut(s) 844
AvaII GGWCC 1 cut(s) 80
BauI CACGAG 1 cut(s) 728
BbsI GAAGAC 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 317
BciT130I CCWGG 1 cut(s) 648
BclI TGATCA 2 cut(s) 261, 468
BcnI CCSGG 1 cut(s) 641
BcoDI GTCTC 2 cut(s) 283, 725
BfaI CTAG 4 cut(s) 173, 495, 744, 934
BfmI CTRYAG 1 cut(s) 722
BisI GCNGC 2 cut(s) 192, 254
BlsI GCNGC 2 cut(s) 193, 255
BmcAI AGTACT 2 cut(s) 345, 548
Bme1390I CCNGG 2 cut(s) 641, 648
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 2 cut(s) 54, 645
BmrFI CCNGG 2 cut(s) 641, 648
BmsI GCATC 1 cut(s) 406
BpiI GAAGAC 1 cut(s) 248
Bpu14I TTCGAA 1 cut(s) 844
BpuMI CCSGG 1 cut(s) 641
BsaBI GATNNNNATC 1 cut(s) 467
BsaJI CCNNGG 1 cut(s) 672
BsaXI ACNNNNNCTCC 2 cut(s) 746, 776
Bsc4I CCNNNNNNNGG 2 cut(s) 639, 749
Bse8I GATNNNNATC 1 cut(s) 467
BseBI CCWGG 1 cut(s) 648
BseDI CCNNGG 1 cut(s) 672
BseGI GGATG 2 cut(s) 367, 427
BseJI GATNNNNATC 1 cut(s) 467
BseLI CCNNNNNNNGG 2 cut(s) 639, 749
BseMII CTCAG 1 cut(s) 212
BsePI GCGCGC 1 cut(s) 716
Bsh1236I CGCG 1 cut(s) 718
BshFI GGCC 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 317
BsiSI CCGG 1 cut(s) 640
BslI CCNNNNNNNGG 2 cut(s) 639, 749
BsmAI GTCTC 2 cut(s) 283, 725
BsmI GAATGC 1 cut(s) 131
BsnI GGCC 1 cut(s) 194
Bsp119I TTCGAA 1 cut(s) 844
Bsp1286I GDGCHC 1 cut(s) 317
Bsp143I GATC 5 cut(s) 261, 468, 531, 739, 776
BspACI CCGC 6 cut(s) 151, 191, 254, 419, 434, 750
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 213
BspFNI CGCG 1 cut(s) 718
BspLI GGNNCC 2 cut(s) 54, 645
BspPI GGATC 2 cut(s) 526, 734
BspT104I TTCGAA 1 cut(s) 844
BssECI CCNNGG 1 cut(s) 672
BssHII GCGCGC 1 cut(s) 716
BssMI GATC 5 cut(s) 261, 468, 531, 739, 776
BssSI CACGAG 1 cut(s) 728
BssT1I CCWWGG 1 cut(s) 672
Bst2BI CACGAG 1 cut(s) 728
Bst2UI CCWGG 1 cut(s) 648
Bst4CI ACNGT 1 cut(s) 907
Bst6I CTCTTC 2 cut(s) 329, 496
BstAPI GCANNNNNTGC 1 cut(s) 301
BstBI TTCGAA 1 cut(s) 844
BstC8I GCNNGC 2 cut(s) 36, 718
BstDEI CTNAG 1 cut(s) 221
BstF5I GGATG 2 cut(s) 367, 427
BstFNI CGCG 1 cut(s) 718
BstHHI GCGC 3 cut(s) 544, 718, 720
BstKTI GATC 5 cut(s) 264, 471, 534, 742, 779
BstMAI GTCTC 2 cut(s) 283, 725
BstMBI GATC 5 cut(s) 261, 468, 531, 739, 776
BstMWI GCNNNNNNNGC 2 cut(s) 301, 724
BstNI CCWGG 1 cut(s) 648
BstSCI CCNGG 2 cut(s) 639, 646
BstSFI CTRYAG 1 cut(s) 722
BstUI CGCG 1 cut(s) 718
BstV2I GAAGAC 1 cut(s) 248
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 2 cut(s) 367, 427
Cac8I GCNNGC 2 cut(s) 36, 718
CfoI GCGC 3 cut(s) 544, 718, 720
Cfr13I GGNCC 1 cut(s) 80
CseI GACGC 1 cut(s) 698
CsiI ACCWGGT 1 cut(s) 646
Csp6I GTAC 2 cut(s) 344, 547
CviAII CATG 1 cut(s) 820
CviJI RGCY 6 cut(s) 34, 55, 194, 253, 269, 686
CviKI_1 RGCY 6 cut(s) 34, 55, 194, 253, 269, 686
CviQI GTAC 2 cut(s) 344, 547
DdeI CTNAG 1 cut(s) 221
DpnI GATC 5 cut(s) 263, 470, 533, 741, 778
DpnII GATC 5 cut(s) 261, 468, 531, 739, 776
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 2 cut(s) 329, 496
EarI CTCTTC 2 cut(s) 329, 496
Eco130I CCWWGG 1 cut(s) 672
Eco47I GGWCC 1 cut(s) 80
Eco57I CTGAAG 2 cut(s) 69, 720
EcoO109I RGGNCCY 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 605
EcoRII CCWGG 1 cut(s) 646
EcoT14I CCWWGG 1 cut(s) 672
ErhI CCWWGG 1 cut(s) 672
FaeI CATG 1 cut(s) 823
FalI AAGNNNNNCTT 2 cut(s) 547, 579
FatI CATG 1 cut(s) 819
FauI CCCGC 1 cut(s) 743
FbaI TGATCA 2 cut(s) 261, 468
Fnu4HI GCNGC 2 cut(s) 192, 254
FokI GGATG 2 cut(s) 374, 434
Fsp4HI GCNGC 2 cut(s) 192, 254
FspBI CTAG 4 cut(s) 173, 495, 744, 934
FspI TGCGCA 1 cut(s) 543
GlaI GCGC 3 cut(s) 543, 717, 719
GluI GCNGC 2 cut(s) 192, 254
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 640
HgaI GACGC 1 cut(s) 698
HhaI GCGC 3 cut(s) 544, 718, 720
Hin1II CATG 1 cut(s) 823
Hin6I GCGC 3 cut(s) 542, 716, 718
HinP1I GCGC 3 cut(s) 542, 716, 718
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HinfI GANTC 4 cut(s) 6, 449, 454, 677
HpaII CCGG 1 cut(s) 640
HphI GGTGA 4 cut(s) 463, 541, 629, 893
Hpy166II GTNNAC 2 cut(s) 769, 817
Hpy188I TCNGA 3 cut(s) 88, 266, 459
Hpy188III TCNNGA 2 cut(s) 78, 868
Hpy8I GTNNAC 2 cut(s) 769, 817
HpyAV CCTTC 2 cut(s) 93, 352
HpyCH4III ACNGT 1 cut(s) 907
HpyCH4V TGCA 5 cut(s) 131, 295, 397, 593, 862
HpyF10VI GCNNNNNNNGC 2 cut(s) 301, 724
HpyF3I CTNAG 1 cut(s) 221
Hsp92II CATG 1 cut(s) 823
HspAI GCGC 3 cut(s) 542, 716, 718
Ksp22I TGATCA 2 cut(s) 261, 468
Kzo9I GATC 5 cut(s) 261, 468, 531, 739, 776
LmnI GCTCC 2 cut(s) 31, 52
LpnPI CCDG 8 cut(s) 53, 63, 69, 268, 633, 653, 660, 853
LweI GCATC 1 cut(s) 406
MabI ACCWGGT 1 cut(s) 646
MaeI CTAG 4 cut(s) 173, 495, 744, 934
MalI GATC 5 cut(s) 263, 470, 533, 741, 778
MboI GATC 5 cut(s) 261, 468, 531, 739, 776
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 6 cut(s) 46, 124, 271, 348, 605, 618
MlyI GAGTC 1 cut(s) 15
MnlI CCTC 6 cut(s) 216, 330, 508, 551, 740, 892
MroXI GAANNNNTTC 1 cut(s) 906
MseI TTAA 3 cut(s) 249, 486, 617
MspI CCGG 1 cut(s) 640
MspR9I CCNGG 2 cut(s) 641, 648
Mva1269I GAATGC 1 cut(s) 131
MvaI CCWGG 1 cut(s) 648
MvnI CGCG 1 cut(s) 718
MwoI GCNNNNNNNGC 2 cut(s) 301, 724
NciI CCSGG 1 cut(s) 641
NdeII GATC 5 cut(s) 261, 468, 531, 739, 776
NlaIII CATG 1 cut(s) 823
NlaIV GGNNCC 2 cut(s) 54, 645
NsbI TGCGCA 1 cut(s) 543
NspV TTCGAA 1 cut(s) 844
PauI GCGCGC 1 cut(s) 716
PctI GAATGC 1 cut(s) 131
PdmI GAANNNNTTC 1 cut(s) 906
PfeI GAWTC 3 cut(s) 449, 454, 677
PkrI GCNGC 2 cut(s) 193, 255
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PpuMI RGGWCCY 1 cut(s) 80
Psp5II RGGWCCY 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 646
PspGI CCWGG 1 cut(s) 646
PspN4I GGNNCC 2 cut(s) 54, 645
PspPI GGNCC 1 cut(s) 80
PspPPI RGGWCCY 1 cut(s) 80
PteI GCGCGC 1 cut(s) 716
RsaI GTAC 2 cut(s) 345, 548
RsaNI GTAC 2 cut(s) 344, 547
SaqAI TTAA 3 cut(s) 249, 486, 617
SatI GCNGC 2 cut(s) 192, 254
Sau3AI GATC 5 cut(s) 261, 468, 531, 739, 776
Sau96I GGNCC 1 cut(s) 80
ScaI AGTACT 2 cut(s) 345, 548
SchI GAGTC 1 cut(s) 15
ScrFI CCNGG 2 cut(s) 641, 648
SduI GDGCHC 1 cut(s) 317
SetI ASST 5 cut(s) 36, 85, 383, 652, 688
SexAI ACCWGGT 1 cut(s) 646
SfaNI GCATC 1 cut(s) 406
SfcI CTRYAG 1 cut(s) 722
SfuI TTCGAA 1 cut(s) 844
SinI GGWCC 1 cut(s) 80
Sse9I AATT 6 cut(s) 46, 124, 271, 348, 605, 618
SsiI CCGC 6 cut(s) 151, 191, 254, 419, 434, 750
SspMI CTAG 4 cut(s) 173, 495, 744, 934
StyD4I CCNGG 2 cut(s) 639, 646
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 1 cut(s) 907
TaqI TCGA 3 cut(s) 182, 452, 844
TasI AATT 6 cut(s) 46, 124, 271, 348, 605, 618
TatI WGTACW 2 cut(s) 343, 546
TauI GCSGC 2 cut(s) 194, 256
TfiI GAWTC 3 cut(s) 449, 454, 677
Tru1I TTAA 3 cut(s) 249, 486, 617
Tru9I TTAA 3 cut(s) 249, 486, 617
TspDTI ATGAA 4 cut(s) 137, 155, 335, 617
VpaK11BI GGWCC 1 cut(s) 80
XapI RAATTY 3 cut(s) 46, 124, 605
XmnI GAANNNNTTC 1 cut(s) 906
XspI CTAG 4 cut(s) 173, 495, 744, 934
ZrmI AGTACT 2 cut(s) 345, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.