Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001615

Physical Location & Seq

Genomic Coordinates Forward (+)

36899769 .. 36900113

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018815

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTCACAGTTCAACCTCTTGACTGTTAGGGCCAGCATTGACTTGATGTCGGCCCCGTTAGTGTTAGAGATTCGCCAGATCACAGTGCTTAGGCTTCCACATCCACTTAACGAGTTCGCAGCCCTTGGATTTGTTGCTGGAAATGCAATTCTAGCCATTGAAGATCTCCTTGCAGGTGTTCTCGTACTTGGGAGAAGCATTACGGTTGTAGATCCAGGCTCCATCAGGGTAGTCGCAGGACCCAACAGGCTCCGTCAAGTCAAATTCTGGGGGTTTCCGGAATTCGAGGGAGCTATGAGGTTGGGAAGGAATGGAGGAGGTGTTTCTGATGTAAGAGAGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

12.35

Weight (kDa)

10.41

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001615)

Species	Orthologous Gene IDs
malus_domestica	MD00G1174900.v1.1 MD01G1174900.v1.1
pyrus_communis	pycom01g02540 pycom02g08640 pycom02g21750 pycom05g02950 pycom05g07810 pycom07g08030 pycom11g21700 pycom13g23410 pycom16g13490 pycom17g16180
rosa_chinensis	RchiOBHm_Chr6g0247261 RchiOBHm_Chr7g0204481
rosa_laevigata	RLG00000007852 RLG00000013807 RLG00000018815 RLG00000023656 RLG00000036145 RLG00000036151
rosa_multiflora	Rmu_sc0000367.1_g000212
rosa_roxburghii	Rroxscaffold_1G00054610 Rroxscaffold_3G00223650 Rroxscaffold_4G00310010 Rroxscaffold_4G00326510 Rroxscaffold_5G00347060 Rroxscaffold_7G00200030
rosa_rugosa	Rorug02G0466400 Rorug04G0195600 Rorug06G0200000
rosa_samantha	Rh2DG335000 Rh4BG049400 Rh4CG056000 Rh4CG286000 Rh4DG269000 Rh6AG158900 Rh6AG260100 Rh6BG163100 Rh6BG263200 Rh6CG155300 Rh6CG155400 Rh6CG262200 Rh6CG325100 Rh6DG138200 Rh6DG148900 Rh6DG254100 Rh6DG254400 Rh6DG310900 Rh7DG185300
rosa_wichuraiana	Rw1G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	164
Acc36I	ACCTGC	1 cut(s)	164
AccBSI	CCGCTC	1 cut(s)	340
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	1 cut(s)	340
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	2 cut(s)	263, 281
AfaI	GTAC	1 cut(s)	186
AgsI	TTSAA	2 cut(s)	13, 161
AhdI	GACNNNNNGTC	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
AlwI	GGATC	1 cut(s)	206
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	2 cut(s)	30, 51
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	2 cut(s)	263, 281
AspS9I	GGNCC	3 cut(s)	30, 52, 239
AvaII	GGWCC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	216
BfaI	CTAG	1 cut(s)	152
BfuAI	ACCTGC	1 cut(s)	164
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	239
BmeRI	GACNNNNNGTC	1 cut(s)	46
BmgT120I	GGNCC	3 cut(s)	30, 52, 239
BmiI	GGNNCC	4 cut(s)	54, 220, 241, 251
BmrFI	CCNGG	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	277
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
BseAI	TCCGGA	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	1 cut(s)	131
BshFI	GGCC	2 cut(s)	32, 53
BsiSI	CCGG	1 cut(s)	278
BsnI	GGCC	2 cut(s)	32, 53
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	3 cut(s)	78, 163, 211
BspACI	CCGC	1 cut(s)	340
BspANI	GGCC	2 cut(s)	32, 53
BspEI	TCCGGA	1 cut(s)	277
BspLI	GGNNCC	4 cut(s)	54, 220, 241, 251
BspMI	ACCTGC	1 cut(s)	164
BspPI	GGATC	1 cut(s)	206
BsrBI	CCGCTC	1 cut(s)	340
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	3 cut(s)	78, 163, 211
BssT1I	CCWWGG	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	4 cut(s)	9, 25, 85, 205
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	100
BstKTI	GATC	3 cut(s)	81, 166, 214
BstMBI	GATC	3 cut(s)	78, 163, 211
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 152
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	131
BstX2I	RGATCY	2 cut(s)	163, 211
BstYI	RGATCY	2 cut(s)	163, 211
BsuRI	GGCC	2 cut(s)	32, 53
BtsCI	GGATG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	90
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	34
Cfr13I	GGNCC	3 cut(s)	30, 52, 239
Csp6I	GTAC	1 cut(s)	185
CviJI	RGCY	8 cut(s)	32, 53, 94, 122, 155, 219, 250, 293
CviKI_1	RGCY	8 cut(s)	32, 53, 94, 122, 155, 219, 250, 293
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	3 cut(s)	80, 165, 213
DpnII	GATC	3 cut(s)	78, 163, 211
DriI	GACNNNNNGTC	1 cut(s)	46
Eam1105I	GACNNNNNGTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRI	GAATTC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
FaiI	YATR	1 cut(s)	296
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	32, 53
HapII	CCGG	1 cut(s)	278
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	278
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	2 cut(s)	19, 278
HpyAV	CCTTC	1 cut(s)	300
HpyCH4III	ACNGT	4 cut(s)	9, 25, 85, 205
HpyCH4V	TGCA	2 cut(s)	146, 173
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 152
HpyF3I	CTNAG	1 cut(s)	89
Kpn2I	TCCGGA	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	78, 163, 211
LmnI	GCTCC	3 cut(s)	224, 255, 290
Lsp1109I	GCAGC	1 cut(s)	131
MaeI	CTAG	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	3 cut(s)	80, 165, 213
MbiI	CCGCTC	1 cut(s)	340
MboI	GATC	3 cut(s)	78, 163, 211
MboII	GAAGA	1 cut(s)	173
MflI	RGATCY	2 cut(s)	163, 211
MluCI	AATT	3 cut(s)	147, 263, 281
MnlI	CCTC	5 cut(s)	26, 280, 291, 308, 311
MroI	TCCGGA	1 cut(s)	277
MseI	TTAA	1 cut(s)	108
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	2 cut(s)	143, 152
NdeII	GATC	3 cut(s)	78, 163, 211
NlaIV	GGNNCC	4 cut(s)	54, 220, 241, 251
NmuCI	GTSAC	1 cut(s)	3
PaqCI	CACCTGC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	121
PpuMI	RGGWCCY	1 cut(s)	239
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	4 cut(s)	54, 220, 241, 251
PspPI	GGNCC	3 cut(s)	30, 52, 239
PspPPI	RGGWCCY	1 cut(s)	239
PsuI	RGATCY	2 cut(s)	163, 211
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	3 cut(s)	78, 163, 211
Sau96I	GGNCC	3 cut(s)	30, 52, 239
ScrFI	CCNGG	1 cut(s)	216
SetI	ASST	5 cut(s)	18, 178, 295, 302, 322
SinI	GGWCC	1 cut(s)	239
Sse9I	AATT	3 cut(s)	147, 263, 281
SsiI	CCGC	1 cut(s)	340
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	4 cut(s)	9, 25, 85, 205
TaqI	TCGA	1 cut(s)	285
TasI	AATT	3 cut(s)	147, 263, 281
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	3
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	239
XapI	RAATTY	2 cut(s)	263, 281
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.