Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001615

Physical Location & Seq

Genomic Coordinates Forward (+)

20957536 .. 20959369

Gene Structure 1834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g23410.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGTTGTTTCTGATACACTTAAATTACTTTTTATATTTTATAGGCAAATGGTGGATAATACATAGAATTACTTTTCTATTTTCTATATCCTACGTGGCAAATTCATACTATTTGGACCAGATATTCAACCAAATCCCCTTGCATACTAGCATACATTCACAGTATAATGCATATAATCTTTTATATCCATATATTGTTAGTAAAACGAATGAAAAAAATTTCAAACAAGTGACCTTTTATCACAGTAATAAAAATGTATGGAGTTTTCACGTGACGACACGAGTTCAAACTCCATCAATAACTAATCTAACACCTAATTTTGGTATTGATTGTTTGCATGACGACATGAGTTCAAACCCTGTCAATAGTTTATCTAACAAAATTTATCGTTTAACAAAAAAAACCAAAAGATTAATAATTAAGACAAAATTCAACATTAAACAATTCAATGAAATTGACCAAACTGCCATTTTTTCTCTTTTCATCTTCACTTTTCCAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCTCTTCTCCCTCCTTCCACCTAACCTAGCCCTACCCCTGCGGCCTCAACTCGCCCACCCCTTTCCCTCCCTACTCCCACCTTCTCTCTCTCTCTCTCTTCTCCCTCTCTTCTCTCCTCCTGCCCCCCGGGCTATTCACTATTTAATCCACCTAGTGAACAGTAATTGTCATAATGAACAAGTCAATAAAATAATATTCCCGACTGTTGGATTTGCCACTGGAAATGCAATTCCATCCCTTGAATATCTCCTTGTAGGTATTGTCATACCTCGGAGGGGAATCTGGGTCGTGGATCCATTTTCCGTCGGAGTAGTCACACGACCCGCCTCGATTACTCGGGTCGGATCTGTCAGTCATTTGGAATTTGAAGCTTGCGTTATGCAGTCGCGGAGAAACGGAGGTCTTTCGAATGAAGGAGAGAACGAGGAAGATGGAGACAAAGCAGACGAGGGAGAAAAGAGGGAAGAGTGGAACTTTCCTCGTCTGGTTTTGCTGTTGAGGGTGTTATCGACGTCACCAGCATCGAGATCGACTTCCACGAAGAGCTGTCCAGGCCTGTCCACCACCACATCAGGGTGTTGCTGCTCTTCAACTCTATCCAGGCTCATCCATAACGTGGCTGAGGTCGGCCAGACGTCAACCTTGCATCACATGCCCTTCGGGCTCTCGGGCTGGCAACTCTTGCCGGGCCTCTCCCTCAGGCCTACTCGGGCTCCATCGCTAGCACATGCTGAACCAAGTTGCTATTGCCCACGGTGGAACTACTCTAAGATGAGCCGTTGGAGTTCTTTTGTAGTTAACACAACTGATCTCTTTAGACATACTGAAAATATGACTTTAACCCTTAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

468

Amino Acids

52.69

Weight (kDa)

9.33

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001615)

Species	Orthologous Gene IDs
malus_domestica	MD00G1174900.v1.1 MD01G1174900.v1.1
pyrus_communis	pycom01g02540 pycom02g08640 pycom02g21750 pycom05g02950 pycom05g07810 pycom07g08030 pycom11g21700 pycom13g23410 pycom16g13490 pycom17g16180
rosa_chinensis	RchiOBHm_Chr6g0247261 RchiOBHm_Chr7g0204481
rosa_laevigata	RLG00000007852 RLG00000013807 RLG00000018815 RLG00000023656 RLG00000036145 RLG00000036151
rosa_multiflora	Rmu_sc0000367.1_g000212
rosa_roxburghii	Rroxscaffold_1G00054610 Rroxscaffold_3G00223650 Rroxscaffold_4G00310010 Rroxscaffold_4G00326510 Rroxscaffold_5G00347060 Rroxscaffold_7G00200030
rosa_rugosa	Rorug02G0466400 Rorug04G0195600 Rorug06G0200000
rosa_samantha	Rh2DG335000 Rh4BG049400 Rh4CG056000 Rh4CG286000 Rh4DG269000 Rh6AG158900 Rh6AG260100 Rh6BG163100 Rh6BG263200 Rh6CG155300 Rh6CG155400 Rh6CG262200 Rh6CG325100 Rh6DG138200 Rh6DG148900 Rh6DG254100 Rh6DG254400 Rh6DG310900 Rh7DG185300
rosa_wichuraiana	Rw1G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	1064, 1187
AccB7I	CCANNNNNTGG	1 cut(s)	1165
AccII	CGCG	1 cut(s)	937
AciI	CCGC	3 cut(s)	589, 873, 937
AclWI	GGATC	3 cut(s)	836, 849, 901
AcoI	YGGCCR	1 cut(s)	1177
AcsI	RAATTY	5 cut(s)	100, 217, 381, 428, 911
AcvI	CACGTG	1 cut(s)	271
AcyI	GRCGYC	2 cut(s)	1061, 1184
AdeI	CACNNNGTG	1 cut(s)	703
AfiI	CCNNNNNNNGG	5 cut(s)	320, 755, 824, 1122, 1165
AgsI	TTSAA	9 cut(s)	127, 223, 287, 354, 433, 448, 791, 917, 1140
AjnI	CCWGG	2 cut(s)	1099, 1148
AluBI	AGCT	3 cut(s)	920, 1095, 1400
AluI	AGCT	3 cut(s)	920, 1095, 1400
Alw26I	GTCTC	1 cut(s)	978
AlwI	GGATC	3 cut(s)	836, 849, 901
Ama87I	CYCGRG	4 cut(s)	675, 885, 1216, 1257
AoxI	GGCC	5 cut(s)	590, 1102, 1177, 1237, 1250
ApeKI	GCWGC	1 cut(s)	1131
ApoI	RAATTY	5 cut(s)	100, 217, 381, 428, 911
AseI	ATTAAT	1 cut(s)	413
AspS9I	GGNCC	2 cut(s)	115, 1237
AsuC2I	CCSGG	3 cut(s)	676, 677, 1236
AsuHPI	GGTGA	1 cut(s)	1056
AsuII	TTCGAA	1 cut(s)	956
AsuNHI	GCTAGC	1 cut(s)	1270
AvaI	CYCGRG	4 cut(s)	675, 885, 1216, 1257
AvaII	GGWCC	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	1247
BamHI	GGATCC	1 cut(s)	841
BanII	GRGCYC	2 cut(s)	1215, 1264
BauI	CACGAG	1 cut(s)	279
BbrPI	CACGTG	1 cut(s)	271
BbvCI	CCTCAGC	1 cut(s)	1170
BbvI	GCAGC	1 cut(s)	1118
BccI	CCATC	4 cut(s)	301, 790, 974, 1273
BceAI	ACGGC	1 cut(s)	1311
BcgI	CGANNNNNNTGC	2 cut(s)	1059, 1093
BciT130I	CCWGG	2 cut(s)	1101, 1150
BcnI	CCSGG	3 cut(s)	676, 677, 1236
BcoDI	GTCTC	1 cut(s)	978
BfaI	CTAG	4 cut(s)	147, 575, 701, 1271
BglI	GCCNNNNNGGC	2 cut(s)	677, 1210
BisI	GCNGC	2 cut(s)	590, 1132
BlsI	GCNGC	2 cut(s)	591, 1133
Bme1390I	CCNGG	5 cut(s)	676, 677, 1101, 1150, 1236
Bme18I	GGWCC	1 cut(s)	115
BmeT110I	CYCGRG	4 cut(s)	675, 885, 1216, 1257
BmgT120I	GGNCC	2 cut(s)	115, 1237
BmiI	GGNNCC	2 cut(s)	843, 1263
BmrFI	CCNGG	5 cut(s)	676, 677, 1101, 1150, 1236
BmsI	GCATC	2 cut(s)	1079, 1204
BmtI	GCTAGC	1 cut(s)	1274
Bpu10I	CCTNAGC	1 cut(s)	1170
Bpu14I	TTCGAA	1 cut(s)	956
BpuMI	CCSGG	3 cut(s)	676, 677, 1236
BsaAI	YACGTR	2 cut(s)	94, 271
BsaHI	GRCGYC	2 cut(s)	1061, 1184
BsaJI	CCNNGG	4 cut(s)	674, 675, 818, 1301
BsaXI	ACNNNNNCTCC	2 cut(s)	1246, 1276
Bsc4I	CCNNNNNNNGG	5 cut(s)	320, 755, 824, 1122, 1165
Bse1I	ACTGG	1 cut(s)	772
Bse21I	CCTNAGG	1 cut(s)	1247
BseBI	CCWGG	2 cut(s)	1101, 1150
BseDI	CCNNGG	4 cut(s)	674, 675, 818, 1301
BseGI	GGATG	2 cut(s)	782, 1155
BseLI	CCNNNNNNNGG	5 cut(s)	320, 755, 824, 1122, 1165
BseMII	CTCAG	2 cut(s)	1161, 1261
BseNI	ACTGG	1 cut(s)	772
BseRI	GAGGAG	1 cut(s)	654
BseXI	GCAGC	1 cut(s)	1118
Bsh1236I	CGCG	1 cut(s)	937
BshFI	GGCC	5 cut(s)	592, 1104, 1179, 1239, 1252
BsiHKCI	CYCGRG	4 cut(s)	675, 885, 1216, 1257
BsiSI	CCGG	2 cut(s)	676, 1235
BslI	CCNNNNNNNGG	5 cut(s)	320, 755, 824, 1122, 1165
BsmAI	GTCTC	1 cut(s)	978
BsnI	GGCC	5 cut(s)	592, 1104, 1179, 1239, 1252
BsoBI	CYCGRG	4 cut(s)	675, 885, 1216, 1257
Bsp119I	TTCGAA	1 cut(s)	956
Bsp1286I	GDGCHC	2 cut(s)	1215, 1264
Bsp143I	GATC	4 cut(s)	841, 893, 1076, 1357
BspACI	CCGC	3 cut(s)	589, 873, 937
BspANI	GGCC	5 cut(s)	592, 1104, 1179, 1239, 1252
BspCNI	CTCAG	2 cut(s)	1162, 1260
BspFNI	CGCG	1 cut(s)	937
BspLI	GGNNCC	2 cut(s)	843, 1263
BspOI	GCTAGC	1 cut(s)	1274
BspPI	GGATC	3 cut(s)	836, 849, 901
BspQI	GCTCTTC	2 cut(s)	1085, 1141
BspT104I	TTCGAA	1 cut(s)	956
BsrI	ACTGG	1 cut(s)	772
BssECI	CCNNGG	4 cut(s)	674, 675, 818, 1301
BssMI	GATC	4 cut(s)	841, 893, 1076, 1357
BssNI	GRCGYC	2 cut(s)	1061, 1184
BssSI	CACGAG	1 cut(s)	279
Bst2BI	CACGAG	1 cut(s)	279
Bst2UI	CCWGG	2 cut(s)	1101, 1150
Bst4CI	ACNGT	5 cut(s)	162, 245, 710, 754, 1305
Bst6I	CTCTTC	6 cut(s)	557, 651, 662, 1008, 1085, 1141
BstACI	GRCGYC	2 cut(s)	1061, 1184
BstAPI	GCANNNNNTGC	2 cut(s)	1201, 1231
BstBAI	YACGTR	2 cut(s)	94, 271
BstBI	TTCGAA	1 cut(s)	956
BstC8I	GCNNGC	3 cut(s)	922, 1223, 1272
BstDEI	CTNAG	3 cut(s)	1170, 1247, 1317
BstDSI	CCRYGG	1 cut(s)	1301
BstF5I	GGATG	2 cut(s)	782, 1155
BstFNI	CGCG	1 cut(s)	937
BstKTI	GATC	4 cut(s)	844, 896, 1079, 1360
BstMAI	GTCTC	1 cut(s)	978
BstMBI	GATC	4 cut(s)	841, 893, 1076, 1357
BstMWI	GCNNNNNNNGC	5 cut(s)	677, 1101, 1201, 1210, 1231
BstNI	CCWGG	2 cut(s)	1101, 1150
BstNSI	RCATGY	2 cut(s)	1204, 1280
BstSCI	CCNGG	5 cut(s)	674, 675, 1099, 1148, 1234
BstUI	CGCG	1 cut(s)	937
BstV1I	GCAGC	1 cut(s)	1118
BstX2I	RGATCY	2 cut(s)	841, 893
BstYI	RGATCY	2 cut(s)	841, 893
Bsu36I	CCTNAGG	1 cut(s)	1247
BsuRI	GGCC	5 cut(s)	592, 1104, 1179, 1239, 1252
BtgI	CCRYGG	1 cut(s)	1301
BtgZI	GCGATG	1 cut(s)	1251
BtsCI	GGATG	2 cut(s)	782, 1155
BtsIMutI	CAGTG	1 cut(s)	765
Cac8I	GCNNGC	3 cut(s)	922, 1223, 1272
Cfr13I	GGNCC	2 cut(s)	115, 1237
Cfr9I	CCCGGG	1 cut(s)	675
CviAII	CATG	4 cut(s)	338, 346, 1201, 1277
DdeI	CTNAG	3 cut(s)	1170, 1247, 1317
DpnI	GATC	4 cut(s)	843, 895, 1078, 1359
DpnII	GATC	4 cut(s)	841, 893, 1076, 1357
DraIII	CACNNNGTG	1 cut(s)	703
EaeI	YGGCCR	1 cut(s)	1177
Eam1104I	CTCTTC	6 cut(s)	557, 651, 662, 1008, 1085, 1141
EarI	CTCTTC	6 cut(s)	557, 651, 662, 1008, 1085, 1141
Eco147I	AGGCCT	2 cut(s)	1104, 1252
Eco24I	GRGCYC	2 cut(s)	1215, 1264
Eco47I	GGWCC	1 cut(s)	115
Eco72I	CACGTG	1 cut(s)	271
Eco81I	CCTNAGG	1 cut(s)	1247
Eco88I	CYCGRG	4 cut(s)	675, 885, 1216, 1257
EcoRII	CCWGG	2 cut(s)	1099, 1148
EcoT22I	ATGCAT	1 cut(s)	172
EcoT38I	GRGCYC	2 cut(s)	1215, 1264
FaeI	CATG	4 cut(s)	341, 349, 1204, 1280
FatI	CATG	4 cut(s)	337, 345, 1200, 1276
FauI	CCCGC	1 cut(s)	880
Fnu4HI	GCNGC	2 cut(s)	590, 1132
FokI	GGATG	2 cut(s)	769, 1142
FriOI	GRGCYC	2 cut(s)	1215, 1264
Fsp4HI	GCNGC	2 cut(s)	590, 1132
FspBI	CTAG	4 cut(s)	147, 575, 701, 1271
GluI	GCNGC	2 cut(s)	590, 1132
HaeIII	GGCC	5 cut(s)	592, 1104, 1179, 1239, 1252
HapII	CCGG	2 cut(s)	676, 1235
Hin1I	GRCGYC	2 cut(s)	1061, 1184
Hin1II	CATG	4 cut(s)	341, 349, 1204, 1280
HincII	GTYRAC	2 cut(s)	1188, 1348
HindII	GTYRAC	2 cut(s)	1188, 1348
HindIII	AAGCTT	2 cut(s)	918, 1398
HinfI	GANTC	1 cut(s)	828
HpaI	GTTAAC	1 cut(s)	1348
HpaII	CCGG	2 cut(s)	676, 1235
HphI	GGTGA	1 cut(s)	1056
Hpy166II	GTNNAC	4 cut(s)	706, 1110, 1188, 1348
Hpy188I	TCNGA	4 cut(s)	12, 822, 857, 893
Hpy188III	TCNNGA	2 cut(s)	748, 1074
Hpy8I	GTNNAC	4 cut(s)	706, 1110, 1188, 1348
Hpy99I	CGWCG	2 cut(s)	857, 1063
HpyAV	CCTTC	4 cut(s)	572, 639, 956, 1216
HpyCH4III	ACNGT	5 cut(s)	162, 245, 710, 754, 1305
HpyCH4IV	ACGT	5 cut(s)	93, 270, 1061, 1164, 1184
HpyCH4V	TGCA	6 cut(s)	142, 170, 337, 776, 931, 1195
HpyF10VI	GCNNNNNNNGC	5 cut(s)	677, 1101, 1201, 1210, 1231
HpyF3I	CTNAG	3 cut(s)	1170, 1247, 1317
HpySE526I	ACGT	5 cut(s)	93, 270, 1061, 1164, 1184
Hsp92I	GRCGYC	2 cut(s)	1061, 1184
Hsp92II	CATG	4 cut(s)	341, 349, 1204, 1280
KspAI	GTTAAC	1 cut(s)	1348
Kzo9I	GATC	4 cut(s)	841, 893, 1076, 1357
LguI	GCTCTTC	2 cut(s)	1085, 1141
LmnI	GCTCC	1 cut(s)	1267
Lsp1109I	GCAGC	1 cut(s)	1118
LweI	GCATC	2 cut(s)	1079, 1204
MaeI	CTAG	4 cut(s)	147, 575, 701, 1271
MaeII	ACGT	5 cut(s)	93, 270, 1061, 1164, 1184
MaeIII	GTNAC	4 cut(s)	229, 271, 862, 1062
MalI	GATC	4 cut(s)	843, 895, 1078, 1359
MboI	GATC	4 cut(s)	841, 893, 1076, 1357
MboII	GAAGA	8 cut(s)	478, 544, 638, 649, 989, 1025, 1102, 1128
MflI	RGATCY	2 cut(s)	841, 893
MhlI	GDGCHC	2 cut(s)	1215, 1264
MmeI	TCCRAC	5 cut(s)	521, 736, 835, 871, 1310
Mph1103I	ATGCAT	1 cut(s)	172
MslI	CAYNNNNRTG	1 cut(s)	1123
MspI	CCGG	2 cut(s)	676, 1235
MspR9I	CCNGG	5 cut(s)	676, 677, 1101, 1150, 1236
MvaI	CCWGG	2 cut(s)	1101, 1150
MvnI	CGCG	1 cut(s)	937
MwoI	GCNNNNNNNGC	5 cut(s)	677, 1101, 1201, 1210, 1231
NciI	CCSGG	3 cut(s)	676, 677, 1236
NdeII	GATC	4 cut(s)	841, 893, 1076, 1357
NheI	GCTAGC	1 cut(s)	1270
NlaIII	CATG	4 cut(s)	341, 349, 1204, 1280
NlaIV	GGNNCC	2 cut(s)	843, 1263
NmuCI	GTSAC	4 cut(s)	229, 271, 862, 1062
NsiI	ATGCAT	1 cut(s)	172
NspI	RCATGY	2 cut(s)	1204, 1280
NspV	TTCGAA	1 cut(s)	956
PceI	AGGCCT	2 cut(s)	1104, 1252
PciSI	GCTCTTC	2 cut(s)	1085, 1141
PcsI	WCGNNNNNNNCGW	1 cut(s)	1085
PfeI	GAWTC	1 cut(s)	828
PflMI	CCANNNNNTGG	1 cut(s)	1165
PkrI	GCNGC	2 cut(s)	591, 1133
PmaCI	CACGTG	1 cut(s)	271
PmlI	CACGTG	1 cut(s)	271
Ppu21I	YACGTR	2 cut(s)	94, 271
PshBI	ATTAAT	1 cut(s)	413
Psp6I	CCWGG	2 cut(s)	1099, 1148
PspCI	CACGTG	1 cut(s)	271
PspGI	CCWGG	2 cut(s)	1099, 1148
PspN4I	GGNNCC	2 cut(s)	843, 1263
PspPI	GGNCC	2 cut(s)	115, 1237
PsuI	RGATCY	2 cut(s)	841, 893
RseI	CAYNNNNRTG	1 cut(s)	1123
SapI	GCTCTTC	2 cut(s)	1085, 1141
SatI	GCNGC	2 cut(s)	590, 1132
Sau3AI	GATC	4 cut(s)	841, 893, 1076, 1357
Sau96I	GGNCC	2 cut(s)	115, 1237
ScrFI	CCNGG	5 cut(s)	676, 677, 1101, 1150, 1236
SduI	GDGCHC	2 cut(s)	1215, 1264
SfaNI	GCATC	2 cut(s)	1079, 1204
SfuI	TTCGAA	1 cut(s)	956
SinI	GGWCC	1 cut(s)	115
SmaI	CCCGGG	1 cut(s)	677
SmiMI	CAYNNNNRTG	1 cut(s)	1123
SseBI	AGGCCT	2 cut(s)	1104, 1252
SsiI	CCGC	3 cut(s)	589, 873, 937
SspI	AATATT	1 cut(s)	744
SspMI	CTAG	4 cut(s)	147, 575, 701, 1271
StuI	AGGCCT	2 cut(s)	1104, 1252
StyD4I	CCNGG	5 cut(s)	674, 675, 1099, 1148, 1234
TaaI	ACNGT	5 cut(s)	162, 245, 710, 754, 1305
TaiI	ACGT	5 cut(s)	96, 273, 1064, 1167, 1187
TaqI	TCGA	5 cut(s)	878, 956, 1058, 1073, 1079
TauI	GCSGC	1 cut(s)	592
TfiI	GAWTC	1 cut(s)	828
TscAI	CASTG	1 cut(s)	772
TseFI	GTSAC	4 cut(s)	229, 271, 862, 1062
TseI	GCWGC	1 cut(s)	1131
Tsp45I	GTSAC	4 cut(s)	229, 271, 862, 1062
TspDTI	ATGAA	6 cut(s)	93, 225, 465, 472, 738, 975
TspGWI	ACGGA	2 cut(s)	841, 960
TspMI	CCCGGG	1 cut(s)	675
TspRI	CASTG	1 cut(s)	772
Van91I	CCANNNNNTGG	1 cut(s)	1165
VpaK11BI	GGWCC	1 cut(s)	115
VspI	ATTAAT	1 cut(s)	413
XapI	RAATTY	5 cut(s)	100, 217, 381, 428, 911
XceI	RCATGY	2 cut(s)	1204, 1280
XmaI	CCCGGG	1 cut(s)	675
XspI	CTAG	4 cut(s)	147, 575, 701, 1271
ZraI	GACGTC	2 cut(s)	1062, 1185
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.