Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001615

Physical Location & Seq

Genomic Coordinates Forward (+)

47304977 .. 47307036

Gene Structure 2060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGACCATTGCACCCCAAAGCCGCCTCCCATCGCAAAACCCCGGTCCTCTCGCCATTAGGGCCGAGATTTGCCGGATCACGGTGCTTAGGCTTCCACCTCCACTTGACGAGTTTGCGGCTGTTGGATTTGTCTCTTTAAATCTATCCATTTACGTTGTGACACAGATTTCCTCATCTAAGAAGCCGGCAGCCGGTCGGCCTTTAGGACATGGCAGCAGCAGTGGCAGGATGATGAAACAGATGAGCACTACTACTTTTGGTGTGAAATCCATGGCGAAGGCGGCGGTGACATCTTCGCCATTTTTAGACCCGCAGGATAAAGGGGCTGTGCCGAACTGTGGTGGCAACCCACGCACCAACGTCCCCGACGGCCATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.19

Weight (kDa)

9.94

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001615)

Species	Orthologous Gene IDs
malus_domestica	MD00G1174900.v1.1 MD01G1174900.v1.1
pyrus_communis	pycom01g02540 pycom02g08640 pycom02g21750 pycom05g02950 pycom05g07810 pycom07g08030 pycom11g21700 pycom13g23410 pycom16g13490 pycom17g16180
rosa_chinensis	RchiOBHm_Chr6g0247261 RchiOBHm_Chr7g0204481
rosa_laevigata	RLG00000007852 RLG00000013807 RLG00000018815 RLG00000023656 RLG00000036145 RLG00000036151
rosa_multiflora	Rmu_sc0000367.1_g000212
rosa_roxburghii	Rroxscaffold_1G00054610 Rroxscaffold_3G00223650 Rroxscaffold_4G00310010 Rroxscaffold_4G00326510 Rroxscaffold_5G00347060 Rroxscaffold_7G00200030
rosa_rugosa	Rorug02G0466400 Rorug04G0195600 Rorug06G0200000
rosa_samantha	Rh2DG335000 Rh4BG049400 Rh4CG056000 Rh4CG286000 Rh4DG269000 Rh6AG158900 Rh6AG260100 Rh6BG163100 Rh6BG263200 Rh6CG155300 Rh6CG155400 Rh6CG262200 Rh6CG325100 Rh6DG138200 Rh6DG148900 Rh6DG254100 Rh6DG254400 Rh6DG310900 Rh7DG185300
rosa_wichuraiana	Rw1G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	22, 116, 281, 284, 311
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	1 cut(s)	370
AfiI	CCNNNNNNNGG	3 cut(s)	79, 191, 338
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	3 cut(s)	60, 197, 370
ApeKI	GCWGC	3 cut(s)	188, 213, 216
ArsI	GACNNNNNNTTYG	2 cut(s)	28, 60
AspS9I	GGNCC	2 cut(s)	44, 60
AsuC2I	CCSGG	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	298
AvaII	GGWCC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	3 cut(s)	200, 225, 228
BccI	CCATC	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	1 cut(s)	379
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	6 cut(s)	22, 117, 189, 214, 217, 282
BlsI	GCNGC	6 cut(s)	23, 118, 190, 215, 218, 283
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	44, 60
BmrFI	CCNGG	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	40, 270
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 191, 338
Bse118I	RCCGGY	2 cut(s)	184, 191
Bse3DI	GCAATG	2 cut(s)	6, 373
BseDI	CCNNGG	2 cut(s)	40, 270
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	3 cut(s)	79, 191, 338
BseMI	GCAATG	2 cut(s)	6, 373
BseXI	GCAGC	3 cut(s)	200, 225, 228
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	3 cut(s)	62, 199, 372
BsiEI	CGRYCG	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	248
BsiSI	CCGG	4 cut(s)	42, 73, 185, 192
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	3 cut(s)	79, 191, 338
BsmAI	GTCTC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	3 cut(s)	62, 199, 372
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp143I	GATC	1 cut(s)	75
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	5 cut(s)	22, 116, 281, 284, 311
BspANI	GGCC	3 cut(s)	62, 199, 372
BspPI	GGATC	1 cut(s)	83
BsrDI	GCAATG	2 cut(s)	6, 373
BsrFI	RCCGGY	2 cut(s)	184, 191
BssAI	RCCGGY	2 cut(s)	184, 191
BssECI	CCNNGG	2 cut(s)	40, 270
BssMI	GATC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	270
Bst4CI	ACNGT	2 cut(s)	82, 338
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	2 cut(s)	86, 177
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	234
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	75
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 222, 281, 351
BstSCI	CCNGG	1 cut(s)	40
BstV1I	GCAGC	3 cut(s)	200, 225, 228
BsuRI	GGCC	3 cut(s)	62, 199, 372
BtgI	CCRYGG	1 cut(s)	270
BtgZI	GCGATG	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	234
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	186
Cfr10I	RCCGGY	2 cut(s)	184, 191
Cfr13I	GGNCC	2 cut(s)	44, 60
CviAII	CATG	2 cut(s)	209, 271
CviJI	RGCY	9 cut(s)	21, 62, 91, 119, 184, 191, 199, 326, 372
CviKI_1	RGCY	9 cut(s)	21, 62, 91, 119, 184, 191, 199, 326, 372
DdeI	CTNAG	2 cut(s)	86, 177
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
DraI	TTTAAA	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	2 cut(s)	212, 274
FaiI	YATR	2 cut(s)	210, 272
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	2 cut(s)	208, 270
FauI	CCCGC	1 cut(s)	318
Fnu4HI	GCNGC	6 cut(s)	22, 117, 189, 214, 217, 282
FokI	GGATG	1 cut(s)	241
Fsp4HI	GCNGC	6 cut(s)	22, 117, 189, 214, 217, 282
FspBI	CTAG	1 cut(s)	379
GluI	GCNGC	6 cut(s)	22, 117, 189, 214, 217, 282
HaeIII	GGCC	3 cut(s)	62, 199, 372
HapII	CCGG	4 cut(s)	42, 73, 185, 192
Hin1II	CATG	2 cut(s)	212, 274
HpaII	CCGG	4 cut(s)	42, 73, 185, 192
HphI	GGTGA	1 cut(s)	298
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	2 cut(s)	82, 338
HpyCH4IV	ACGT	2 cut(s)	153, 360
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 222, 281, 351
HpyF3I	CTNAG	2 cut(s)	86, 177
HpySE526I	ACGT	2 cut(s)	153, 360
Hsp92II	CATG	2 cut(s)	212, 274
KroI	GCCGGC	1 cut(s)	184
KroNI	GCCGGC	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	75
LpnPI	CCDG	6 cut(s)	55, 86, 198, 205, 211, 299
Lsp1109I	GCAGC	3 cut(s)	200, 225, 228
MaeI	CTAG	1 cut(s)	379
MaeII	ACGT	2 cut(s)	153, 360
MaeIII	GTNAC	2 cut(s)	157, 286
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	1 cut(s)	285
MhlI	GDGCHC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	4 cut(s)	35, 57, 108, 181
MroNI	GCCGGC	1 cut(s)	184
MseI	TTAA	1 cut(s)	137
MspI	CCGG	4 cut(s)	42, 73, 185, 192
MspR9I	CCNGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	4 cut(s)	59, 222, 281, 351
NaeI	GCCGGC	1 cut(s)	186
NciI	CCSGG	1 cut(s)	42
NcoI	CCATGG	1 cut(s)	270
NdeII	GATC	1 cut(s)	75
NgoMIV	GCCGGC	1 cut(s)	184
NlaIII	CATG	2 cut(s)	212, 274
NmeAIII	GCCGAG	1 cut(s)	88
NmuCI	GTSAC	2 cut(s)	157, 286
PdiI	GCCGGC	1 cut(s)	186
PkrI	GCNGC	6 cut(s)	23, 118, 190, 215, 218, 283
PspPI	GGNCC	2 cut(s)	44, 60
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	6 cut(s)	22, 117, 189, 214, 217, 282
Sau3AI	GATC	1 cut(s)	75
Sau96I	GGNCC	2 cut(s)	44, 60
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	1 cut(s)	248
SetI	ASST	3 cut(s)	100, 156, 363
SinI	GGWCC	1 cut(s)	44
SsiI	CCGC	5 cut(s)	22, 116, 281, 284, 311
SspMI	CTAG	1 cut(s)	379
StyD4I	CCNGG	1 cut(s)	40
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	2 cut(s)	82, 338
TaiI	ACGT	2 cut(s)	156, 363
TauI	GCSGC	3 cut(s)	24, 119, 284
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	2 cut(s)	157, 286
TseI	GCWGC	3 cut(s)	188, 213, 216
Tsp45I	GTSAC	2 cut(s)	157, 286
TspDTI	ATGAA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	44
XspI	CTAG	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.