Rh4BG049400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001615
Physical Location & Seq
Forward (+)
8803009 .. 8803272
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG049400.1

Sequence Viewer

Length: 264 bp
ATGTCGCGGTTCAACCTCTTGACCGTTAGGGCCGGCATTGACTTGATGTCGGCACCGTTAGTGTCGGAGATTTGCCAGATCACAGTGCTTAGGCTTCCACCTCCACTTGACGAGTTCGTGGCCATTGGATTTGTTGCTGGAAATGCAATTCCAACCCTTGAAGATCTCTTTGCAGGTGTTGTCGTACTTGGGAGAAGCATTAGGGTCGTAGATCCAGGCTCCATCGGAGTAGTTGCAGGACCCGATCAGCTCCGTCAGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.18

Weight (kDa)

4.72

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 164
Acc36I ACCTGC 1 cut(s) 164
AccB1I GGYRCC 1 cut(s) 52
AccII CGCG 1 cut(s) 7
AciI CCGC 1 cut(s) 7
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 120
AfaI GTAC 1 cut(s) 186
AgsI TTSAA 2 cut(s) 13, 161
AhdI GACNNNNNGTC 1 cut(s) 46
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
AlwI GGATC 1 cut(s) 206
AoxI GGCC 2 cut(s) 30, 120
AspS9I GGNCC 2 cut(s) 30, 239
AvaII GGWCC 1 cut(s) 239
BalI TGGCCA 1 cut(s) 122
BanI GGYRCC 1 cut(s) 52
BccI CCATC 1 cut(s) 230
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BciT130I CCWGG 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 164
BglII AGATCT 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 239
BmeRI GACNNNNNGTC 1 cut(s) 46
BmgT120I GGNCC 2 cut(s) 30, 239
BmiI GGNNCC 3 cut(s) 54, 220, 241
BmrFI CCNGG 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 89
Bse118I RCCGGY 1 cut(s) 32
BseBI CCWGG 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 2 cut(s) 32, 122
BshNI GGYRCC 1 cut(s) 52
BsiSI CCGG 1 cut(s) 33
BsnI GGCC 2 cut(s) 32, 122
Bsp143I GATC 4 cut(s) 78, 163, 211, 244
BspACI CCGC 1 cut(s) 7
BspANI GGCC 2 cut(s) 32, 122
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 3 cut(s) 54, 220, 241
BspMI ACCTGC 1 cut(s) 164
BspPI GGATC 1 cut(s) 206
BspT107I GGYRCC 1 cut(s) 52
BsrFI RCCGGY 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 32
BssMI GATC 4 cut(s) 78, 163, 211, 244
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 3 cut(s) 25, 57, 85
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 89
BstFNI CGCG 1 cut(s) 7
BstKTI GATC 4 cut(s) 81, 166, 214, 247
BstMBI GATC 4 cut(s) 78, 163, 211, 244
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 214
BstUI CGCG 1 cut(s) 7
BstX2I RGATCY 2 cut(s) 163, 211
BstYI RGATCY 2 cut(s) 163, 211
BsuRI GGCC 2 cut(s) 32, 122
BtsIMutI CAGTG 1 cut(s) 90
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 30, 239
Csp6I GTAC 1 cut(s) 185
CviJI RGCY 5 cut(s) 32, 94, 122, 219, 250
CviKI_1 RGCY 5 cut(s) 32, 94, 122, 219, 250
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 1 cut(s) 89
DpnI GATC 4 cut(s) 80, 165, 213, 246
DpnII GATC 4 cut(s) 78, 163, 211, 244
DriI GACNNNNNGTC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 120
Eam1105I GACNNNNNGTC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 239
EcoO109I RGGNCCY 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 214
HaeIII GGCC 2 cut(s) 32, 122
HapII CCGG 1 cut(s) 33
HpaII CCGG 1 cut(s) 33
Hpy188I TCNGA 3 cut(s) 67, 227, 263
Hpy188III TCNNGA 1 cut(s) 19
HpyCH4III ACNGT 3 cut(s) 25, 57, 85
HpyCH4V TGCA 3 cut(s) 146, 173, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 89
KroI GCCGGC 1 cut(s) 32
KroNI GCCGGC 1 cut(s) 34
Kzo9I GATC 4 cut(s) 78, 163, 211, 244
LmnI GCTCC 2 cut(s) 224, 255
LpnPI CCDG 8 cut(s) 46, 89, 123, 159, 201, 222, 228, 242
MalI GATC 4 cut(s) 80, 165, 213, 246
MboI GATC 4 cut(s) 78, 163, 211, 244
MboII GAAGA 1 cut(s) 173
MflI RGATCY 2 cut(s) 163, 211
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 1 cut(s) 147
MluNI TGGCCA 1 cut(s) 122
MmeI TCCRAC 2 cut(s) 45, 176
MnlI CCTC 2 cut(s) 26, 111
Mox20I TGGCCA 1 cut(s) 122
MroNI GCCGGC 1 cut(s) 32
MscI TGGCCA 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 122
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 143
NaeI GCCGGC 1 cut(s) 34
NdeII GATC 4 cut(s) 78, 163, 211, 244
NgoMIV GCCGGC 1 cut(s) 32
NlaIV GGNNCC 3 cut(s) 54, 220, 241
PaqCI CACCTGC 1 cut(s) 164
PdiI GCCGGC 1 cut(s) 34
PpuMI RGGWCCY 1 cut(s) 239
Psp5II RGGWCCY 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 54, 220, 241
PspPI GGNCC 2 cut(s) 30, 239
PspPPI RGGWCCY 1 cut(s) 239
PsuI RGATCY 2 cut(s) 163, 211
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
Sau3AI GATC 4 cut(s) 78, 163, 211, 244
Sau96I GGNCC 2 cut(s) 30, 239
ScrFI CCNGG 1 cut(s) 216
SetI ASST 5 cut(s) 18, 103, 178, 252, 261
SinI GGWCC 1 cut(s) 239
Sse9I AATT 1 cut(s) 147
SsiI CCGC 1 cut(s) 7
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 3 cut(s) 25, 57, 85
TasI AATT 1 cut(s) 147
TscAI CASTG 1 cut(s) 90
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.