RLG00000036151

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001615
Physical Location & Seq
Reverse (-)
76524294 .. 76528015
3722 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036151

Sequence Viewer

Length: 1305 bp
ATGGGAGTCAAGGACAAGAAGAAGAACAAGGAGCTTGCCCAGAGAAATTTGGAGCTTGTTGAAAAGGATAAAAGTTCAGGACCTTCAGAGATGAGAAAGAGAAAAAGAGAGAAGAAAACAATGGTGATTCGAGAAAATGTTCAGATCTCTATTGAAGATAACTCGACCAAAGCAGCCAATGACAAGAAAAAGACAAAGAAACTGAGGAAAGGAAAAGGAAAGAAGACGATGAAGCCGCAGATGATCAGAGCTAATTCGAAGTTCAAGGAGAGATTGGAAGTGCTAAAATGGTGCTCAATGAAGATGATAGTAAGTCAAAGAAACCTAGGAAAAAGAAAAAGAAGAATGGCGATTCCTTCGAAGGTGGGAAGTTACTGGAAAAGAGAGTGGAAGCTGTTCGAGATGAACCTTGTCATTTTAGCTAGGGGTCCTGCTTTTATAGAGGAACTACTTTCGGTGATCCCAAATGCGCAGTACTATAAAAGAGGCACTTATGACTTGAAAAAGATTATAGAGTATGCAAATAAAAAGGAATTCACTTCTTTAATTGTTGTTCATACCCATTGTCGGGAACCAGATGCTCTCCTAATTATTGGCTTACCTAATGGACCTACTGCCCATTTTAAGCTCTCAAAGCTTGTTTTACCGAAGGATATCAAGAATCATGGAAATCCAACCAGTCATGAGCCTGAGCTTGTATTAAACAACTTTACAACACGCCTTGGTCATCGTATTAGGAGGATGGATTACCTTCAAGCTCCTAATGGTTTTCTTCTTTCACCTGCTTTCTTTAGATTAATACAGTCACTTTTCCCTCAAGAACCAAATTTTCGTGGTCGGCGAGTTGTAACTTTCCACAACCAGCGAGATTTTATATTCTTCCGGCATCATCGGTATGCCTCCTTTGCTATTTTTAGTTCTTGCAGTGATCCTTTCTTATACTTGTACATTTTTGAAACCAAAGAGACTAAACAGGCTGAAGTAAAGGGCAAAAAGACCCAGGATTCCAAAGCTGACGCTATTACTGAAGCAAAACCATTTGCGCGCCTACAGGAATGTGGTCCTCGTTTTACCCTTAAATTGATCAGTCTGCAGCACGGGACATTTGATCCTAGAGGCGGGGAGTTTGAGTGGGTTCACAAGAGATCAATGGAAACTTTGATTGATTGGATTGATAGTGAAGTCAACATGAGCAATACTTACGTACTTTTTCGAACTTATGCTCCTGTGCATTTCAGGATTTTGAATGGTAAAGATGTAGATATAGAGGAAACGGTTCTTCGCACTCCAATATCCAAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

435

Amino Acids

50.68

Weight (kDa)

10.05

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 145 - 362 1.9e-27 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 790
Acc16I TGCGCA 1 cut(s) 471
Acc36I ACCTGC 1 cut(s) 790
AccII CGCG 1 cut(s) 1045
AciI CCGC 2 cut(s) 236, 1119
AclWI GGATC 3 cut(s) 454, 923, 1103
AcsI RAATTY 3 cut(s) 46, 533, 826
AcuI CTGAAG 3 cut(s) 69, 999, 1047
AfaI GTAC 3 cut(s) 476, 947, 1206
AfiI CCNNNNNNNGG 3 cut(s) 567, 568, 1118
AgsI TTSAA 7 cut(s) 62, 155, 265, 502, 755, 956, 1246
AjnI CCWGG 1 cut(s) 999
AloI GAACNNNNNNTCC 2 cut(s) 1207, 1239
Alw21I GWGCWC 1 cut(s) 296
Alw26I GTCTC 1 cut(s) 959
AlwI GGATC 3 cut(s) 454, 923, 1103
ApeKI GCWGC 2 cut(s) 173, 1093
ApoI RAATTY 3 cut(s) 46, 533, 826
AseI ATTAAT 1 cut(s) 797
Asp700I GAANNNNTTC 3 cut(s) 138, 395, 1275
AspA2I CCTAGG 1 cut(s) 325
AspLEI GCGC 3 cut(s) 472, 1045, 1047
AspS9I GGNCC 4 cut(s) 80, 428, 608, 1061
AsuHPI GGTGA 3 cut(s) 136, 469, 771
AsuII TTCGAA 3 cut(s) 257, 359, 1213
AvaII GGWCC 4 cut(s) 80, 428, 608, 1061
AvrII CCTAGG 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 185, 1105
BccI CCATC 1 cut(s) 736
BciT130I CCWGG 1 cut(s) 1001
BclI TGATCA 2 cut(s) 243, 1083
BcoDI GTCTC 1 cut(s) 959
BfaI CTAG 4 cut(s) 326, 423, 1113, 1303
BfmI CTRYAG 2 cut(s) 1049, 1091
BfuAI ACCTGC 1 cut(s) 790
BglII AGATCT 1 cut(s) 144
BisI GCNGC 3 cut(s) 174, 236, 1094
BlnI CCTAGG 1 cut(s) 325
BlsI GCNGC 3 cut(s) 175, 237, 1095
BmcAI AGTACT 1 cut(s) 476
Bme1390I CCNGG 1 cut(s) 1001
Bme18I GGWCC 4 cut(s) 80, 428, 608, 1061
BmgT120I GGNCC 4 cut(s) 80, 428, 608, 1061
BmiI GGNNCC 2 cut(s) 429, 573
BmrFI CCNGG 1 cut(s) 1001
BmsI GCATC 2 cut(s) 568, 895
BpiI GAAGAC 1 cut(s) 230
Bpu10I CCTNAGC 1 cut(s) 690
Bpu14I TTCGAA 3 cut(s) 257, 359, 1213
BpuEI CTTGAG 1 cut(s) 801
BsaAI YACGTR 1 cut(s) 1204
BsaJI CCNNGG 3 cut(s) 325, 721, 999
BsaXI ACNNNNNCTCC 4 cut(s) 1115, 1145, 1207, 1237
Bsc4I CCNNNNNNNGG 3 cut(s) 567, 568, 1118
Bse1I ACTGG 2 cut(s) 380, 678
BseBI CCWGG 1 cut(s) 1001
BseDI CCNNGG 3 cut(s) 325, 721, 999
BseGI GGATG 1 cut(s) 747
BseLI CCNNNNNNNGG 3 cut(s) 567, 568, 1118
BseMII CTCAG 2 cut(s) 194, 681
BseNI ACTGG 2 cut(s) 380, 678
BsePI GCGCGC 1 cut(s) 1043
BseXI GCAGC 2 cut(s) 185, 1105
Bsh1236I CGCG 1 cut(s) 1045
BsiHKAI GWGCWC 1 cut(s) 296
BsiSI CCGG 1 cut(s) 883
BslFI GGGAC 1 cut(s) 1114
BslI CCNNNNNNNGG 3 cut(s) 567, 568, 1118
BsmAI GTCTC 1 cut(s) 959
BsmFI GGGAC 1 cut(s) 1114
Bsp119I TTCGAA 3 cut(s) 257, 359, 1213
Bsp1286I GDGCHC 1 cut(s) 296
Bsp1407I TGTACA 1 cut(s) 945
Bsp143I GATC 7 cut(s) 144, 243, 459, 928, 1083, 1108, 1145
BspACI CCGC 2 cut(s) 236, 1119
BspCNI CTCAG 2 cut(s) 195, 682
BspFNI CGCG 1 cut(s) 1045
BspHI TCATGA 1 cut(s) 682
BspLI GGNNCC 2 cut(s) 429, 573
BspMAI CTGCAG 1 cut(s) 1095
BspMI ACCTGC 1 cut(s) 790
BspPI GGATC 3 cut(s) 454, 923, 1103
BspT104I TTCGAA 3 cut(s) 257, 359, 1213
BsrGI TGTACA 1 cut(s) 945
BsrI ACTGG 2 cut(s) 380, 678
BssECI CCNNGG 3 cut(s) 325, 721, 999
BssHII GCGCGC 1 cut(s) 1043
BssMI GATC 7 cut(s) 144, 243, 459, 928, 1083, 1108, 1145
BssT1I CCWWGG 2 cut(s) 325, 721
Bst2UI CCWGG 1 cut(s) 1001
Bst4CI ACNGT 2 cut(s) 804, 1276
BstAUI TGTACA 1 cut(s) 945
BstBAI YACGTR 1 cut(s) 1204
BstBI TTCGAA 3 cut(s) 257, 359, 1213
BstC8I GCNNGC 2 cut(s) 36, 1045
BstDEI CTNAG 2 cut(s) 203, 690
BstF5I GGATG 1 cut(s) 747
BstFNI CGCG 1 cut(s) 1045
BstHHI GCGC 3 cut(s) 472, 1045, 1047
BstKTI GATC 7 cut(s) 147, 246, 462, 931, 1086, 1111, 1148
BstMAI GTCTC 1 cut(s) 959
BstMBI GATC 7 cut(s) 144, 243, 459, 928, 1083, 1108, 1145
BstMWI GCNNNNNNNGC 2 cut(s) 634, 905
BstNI CCWGG 1 cut(s) 1001
BstSCI CCNGG 1 cut(s) 999
BstSFI CTRYAG 2 cut(s) 1049, 1091
BstSNI TACGTA 1 cut(s) 1204
BstUI CGCG 1 cut(s) 1045
BstV1I GCAGC 2 cut(s) 185, 1105
BstV2I GAAGAC 1 cut(s) 230
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
BtsCI GGATG 1 cut(s) 747
BtsI GCAGTG 1 cut(s) 931
BtsIMutI CAGTG 1 cut(s) 931
BveI ACCTGC 1 cut(s) 790
Cac8I GCNNGC 2 cut(s) 36, 1045
CciI TCATGA 1 cut(s) 682
CfoI GCGC 3 cut(s) 472, 1045, 1047
Cfr13I GGNCC 4 cut(s) 80, 428, 608, 1061
CseI GACGC 1 cut(s) 1025
Csp6I GTAC 3 cut(s) 475, 946, 1205
CviAII CATG 3 cut(s) 665, 683, 1189
CviQI GTAC 3 cut(s) 475, 946, 1205
DdeI CTNAG 2 cut(s) 203, 690
DpnI GATC 7 cut(s) 146, 245, 461, 930, 1085, 1110, 1147
DpnII GATC 7 cut(s) 144, 243, 459, 928, 1083, 1108, 1145
Eco105I TACGTA 1 cut(s) 1204
Eco130I CCWWGG 2 cut(s) 325, 721
Eco32I GATATC 1 cut(s) 655
Eco47I GGWCC 4 cut(s) 80, 428, 608, 1061
Eco57I CTGAAG 3 cut(s) 69, 999, 1047
EcoO109I RGGNCCY 2 cut(s) 80, 428
EcoRI GAATTC 1 cut(s) 533
EcoRII CCWGG 1 cut(s) 999
EcoRV GATATC 1 cut(s) 655
EcoT14I CCWWGG 2 cut(s) 325, 721
ErhI CCWWGG 2 cut(s) 325, 721
FaeI CATG 3 cut(s) 668, 686, 1192
FalI AAGNNNNNCTT 2 cut(s) 475, 507
FaqI GGGAC 1 cut(s) 1114
FatI CATG 3 cut(s) 664, 682, 1188
FauI CCCGC 1 cut(s) 1112
FbaI TGATCA 2 cut(s) 243, 1083
Fnu4HI GCNGC 3 cut(s) 174, 236, 1094
FokI GGATG 1 cut(s) 754
Fsp4HI GCNGC 3 cut(s) 174, 236, 1094
FspBI CTAG 4 cut(s) 326, 423, 1113, 1303
FspI TGCGCA 1 cut(s) 471
GlaI GCGC 3 cut(s) 471, 1044, 1046
GluI GCNGC 3 cut(s) 174, 236, 1094
HapII CCGG 1 cut(s) 883
HgaI GACGC 1 cut(s) 1025
HhaI GCGC 3 cut(s) 472, 1045, 1047
Hin1II CATG 3 cut(s) 668, 686, 1192
Hin6I GCGC 3 cut(s) 470, 1043, 1045
HinP1I GCGC 3 cut(s) 470, 1043, 1045
HincII GTYRAC 1 cut(s) 1186
HindII GTYRAC 1 cut(s) 1186
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 5 cut(s) 6, 127, 352, 661, 1004
HpaII CCGG 1 cut(s) 883
HphI GGTGA 3 cut(s) 136, 469, 771
Hpy166II GTNNAC 2 cut(s) 1138, 1186
Hpy188I TCNGA 3 cut(s) 88, 144, 248
Hpy188III TCNNGA 8 cut(s) 78, 131, 400, 569, 658, 683, 818, 1237
Hpy8I GTNNAC 2 cut(s) 1138, 1186
HpyAV CCTTC 5 cut(s) 93, 355, 366, 643, 761
HpyCH4III ACNGT 2 cut(s) 804, 1276
HpyCH4IV ACGT 1 cut(s) 1203
HpyCH4V TGCA 4 cut(s) 521, 924, 1093, 1231
HpyF10VI GCNNNNNNNGC 2 cut(s) 634, 905
HpyF3I CTNAG 2 cut(s) 203, 690
HpySE526I ACGT 1 cut(s) 1203
Hsp92II CATG 3 cut(s) 668, 686, 1192
HspAI GCGC 3 cut(s) 470, 1043, 1045
Ksp22I TGATCA 2 cut(s) 243, 1083
Kzo9I GATC 7 cut(s) 144, 243, 459, 928, 1083, 1108, 1145
LmnI GCTCC 4 cut(s) 31, 52, 763, 1228
Lsp1109I GCAGC 2 cut(s) 185, 1105
LweI GCATC 2 cut(s) 568, 895
MaeI CTAG 4 cut(s) 326, 423, 1113, 1303
MaeII ACGT 1 cut(s) 1203
MaeIII GTNAC 3 cut(s) 371, 804, 847
MalI GATC 7 cut(s) 146, 245, 461, 930, 1085, 1110, 1147
MboI GATC 7 cut(s) 144, 243, 459, 928, 1083, 1108, 1145
MflI RGATCY 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 296
MluCI AATT 7 cut(s) 46, 253, 533, 546, 588, 826, 1079
MlyI GAGTC 1 cut(s) 15
MmeI TCCRAC 1 cut(s) 698
MnlI CCTC 9 cut(s) 198, 436, 479, 732, 825, 910, 1074, 1109, 1261
MroXI GAANNNNTTC 3 cut(s) 138, 395, 1275
MseI TTAA 5 cut(s) 545, 624, 701, 797, 1077
MslI CAYNNNNRTG 1 cut(s) 894
MspI CCGG 1 cut(s) 883
MspR9I CCNGG 1 cut(s) 1001
MvaI CCWGG 1 cut(s) 1001
MvnI CGCG 1 cut(s) 1045
MwoI GCNNNNNNNGC 2 cut(s) 634, 905
NdeII GATC 7 cut(s) 144, 243, 459, 928, 1083, 1108, 1145
NlaIII CATG 3 cut(s) 668, 686, 1192
NlaIV GGNNCC 2 cut(s) 429, 573
NmuCI GTSAC 1 cut(s) 804
NsbI TGCGCA 1 cut(s) 471
NspV TTCGAA 3 cut(s) 257, 359, 1213
PagI TCATGA 1 cut(s) 682
PaqCI CACCTGC 1 cut(s) 790
PauI GCGCGC 1 cut(s) 1043
PcsI WCGNNNNNNNCGW 1 cut(s) 838
PdmI GAANNNNTTC 3 cut(s) 138, 395, 1275
PfeI GAWTC 4 cut(s) 127, 352, 661, 1004
PkrI GCNGC 3 cut(s) 175, 237, 1095
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
Ppu21I YACGTR 1 cut(s) 1204
PpuMI RGGWCCY 2 cut(s) 80, 428
PshBI ATTAAT 1 cut(s) 797
Psp5II RGGWCCY 2 cut(s) 80, 428
Psp6I CCWGG 1 cut(s) 999
PspGI CCWGG 1 cut(s) 999
PspN4I GGNNCC 2 cut(s) 429, 573
PspPI GGNCC 4 cut(s) 80, 428, 608, 1061
PspPPI RGGWCCY 2 cut(s) 80, 428
PstI CTGCAG 1 cut(s) 1095
PsuI RGATCY 1 cut(s) 144
PteI GCGCGC 1 cut(s) 1043
RsaI GTAC 3 cut(s) 476, 947, 1206
RsaNI GTAC 3 cut(s) 475, 946, 1205
RseI CAYNNNNRTG 1 cut(s) 894
SaqAI TTAA 5 cut(s) 545, 624, 701, 797, 1077
SatI GCNGC 3 cut(s) 174, 236, 1094
Sau3AI GATC 7 cut(s) 144, 243, 459, 928, 1083, 1108, 1145
Sau96I GGNCC 4 cut(s) 80, 428, 608, 1061
ScaI AGTACT 1 cut(s) 476
SchI GAGTC 1 cut(s) 15
ScrFI CCNGG 1 cut(s) 1001
SduI GDGCHC 1 cut(s) 296
SfaNI GCATC 2 cut(s) 568, 895
SfcI CTRYAG 2 cut(s) 1049, 1091
SfuI TTCGAA 3 cut(s) 257, 359, 1213
SinI GGWCC 4 cut(s) 80, 428, 608, 1061
SmiMI CAYNNNNRTG 1 cut(s) 894
SmlI CTYRAG 1 cut(s) 816
SmoI CTYRAG 1 cut(s) 816
SnaBI TACGTA 1 cut(s) 1204
Sse9I AATT 7 cut(s) 46, 253, 533, 546, 588, 826, 1079
SsiI CCGC 2 cut(s) 236, 1119
SspMI CTAG 4 cut(s) 326, 423, 1113, 1303
StyD4I CCNGG 1 cut(s) 999
StyI CCWWGG 2 cut(s) 325, 721
TaaI ACNGT 2 cut(s) 804, 1276
TaiI ACGT 1 cut(s) 1206
TaqI TCGA 6 cut(s) 130, 164, 257, 359, 399, 1213
TasI AATT 7 cut(s) 46, 253, 533, 546, 588, 826, 1079
TatI WGTACW 2 cut(s) 474, 945
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 4 cut(s) 127, 352, 661, 1004
Tru1I TTAA 5 cut(s) 545, 624, 701, 797, 1077
Tru9I TTAA 5 cut(s) 545, 624, 701, 797, 1077
TscAI CASTG 1 cut(s) 931
TseFI GTSAC 1 cut(s) 804
TseI GCWGC 2 cut(s) 173, 1093
Tsp45I GTSAC 1 cut(s) 804
TspDTI ATGAA 4 cut(s) 245, 314, 419, 545
TspRI CASTG 1 cut(s) 931
VpaK11BI GGWCC 4 cut(s) 80, 428, 608, 1061
VspI ATTAAT 1 cut(s) 797
XapI RAATTY 3 cut(s) 46, 533, 826
XmaJI CCTAGG 1 cut(s) 325
XmnI GAANNNNTTC 3 cut(s) 138, 395, 1275
XspI CTAG 4 cut(s) 326, 423, 1113, 1303
ZrmI AGTACT 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.