Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001615

Physical Location & Seq

Genomic Coordinates Forward (+)

9678181 .. 9681089

Gene Structure 2909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g13490.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

ATGAAAACATGGGATAGAAATAAAATTGAGGATTGCAAGGAACATTTTTTTCATGAAAATAAACAAACAAATTTACCCATCTACAATAATCTTCAAACACATGCCATTACAAAATTAAAGCCAACATATTATCAAATCAATAATCTTCAAACATTTTTTGGAATATTCTCACCACTATTTACACTAGATATGTGTTACTTAAGTGTTCGTTCTGTTTACTTCTGCAGTACCTCAGAACTGGTGACAGATGCAGATTTGAAGTTTCTGATTGATAACTTCGCGGAGAAGATAGGCGAAAATGTGAAATGGGAAAATGTCATAGACAAAAGAAATGATATTCTATCTTACTATTCGTTGATTGACTATGATATACTAACTTATCCTTTCGGTACCCCAAAATTACTACTGGCATTTACTCTTGTTCTAGAATCTGTTGGTCGCATGAAATACTTGATTCCTTGTTTAACTTTACTGGTTTTAGCAAATAAAGGCTATGGAATTAAGTTTATGTATCTTTTTTCTTGCATTCAGGATGGTTCTTTGACATACTTGAGTGTGATGCTATTTGAGAATTGCTCTCTTGAGAAGCTGAGAGACTTCTACATGGACAATGATTACAGAAAGAACAAAAACAATGGCGTTGAAGTTGGACGGACAATACAAAAGTTTCCACAGTTGACAGCTAGAGAATATGTATTAGGTTGGAGATTGTGGGAGGGAGAAGATAAAACCATTTATTGTTTTATCAAGGTAACTTTTGATAGGTCCTTGCTAAATATGACTGGAAATGACAAACAGAGAGAAGGCAATGACAAACAAACAGTGACACATTACTCATATTATCAGCGTATCATTCATGTTTTTCTACACTGTGCAATAATATTTGAAATAAAAAAAAAATACCTTTTTCTCAATCTTTTTATTCAATCCCTGAAGAGAACGACCTTGCTAGAGCCATCAATTATCTTGTACTCTTGCAAGTATTTTAGTGTTTTTATACCTACTTTTGCAAGTGGTAAAATCCATATCAAGAAATTGGCACCGTTGCCGGAGATTGTTTTAAATAATTTGCCTTTATTAACTCTTATGTGTTTTTATAGGTTACAATTTGTTTCTTTTTTACTAACACCCGGTGGACCACCTCTTTGGGTTTCATTAGCAGAAACAGGTTATTATGGATTTAGGCCTACAGTTTGTGCTCTTTGCAATTCAAATACTCATGATATTTTGCAATGTCTTGAGAAAGAATATTTTCCAGTATATGTTCATATTAATATGAGGAACGACTCAAAAAGGCATTGGAACAATCCCTGTTCAGAATCCTACAATCCAAGTTTGGAAAAGCATCTTGAACACTATTTTGAGCAGTTTAATGTGCCACAAGAACTTCCTGTAGAGGACAAGCTCTTTAAATTGTTAGAATCAACTGAGTTGTACATAGAAATAACCAGTCATGGATTTCAAATTCAAGCATTAAACTGTAGGAATGTCTTTGATGATCAAGAGGAGATTAGTGCAGATATTGAGGAGCAATCTGCCACTCGTTCACACCCAAATGAGGAAACAACCCCTGATGACCTTGAAATTTCCATAGAATCTACTCCTACAAAAGTCTGTGCACCATTCATACATTATCCCGACCCTGCAATAAATGACATGAAAATACCGGATCCCATTAATAACGGGTCTTTAACAGGTTTACATGAGAGTGACACGCGGGTAATCTGTTTTGACACGATAAGAAAAAAAAAATACAATAGATATAATGAATATTTTAAAATTGAAGTTTTATTTATTTTTATAGTATATTATAGGCAAAGATTGAGATTAAAAATCATAAAACACATTAAAAATAAAAATATCAATAATTTACATGTGCAAAAAAATATGCAAATGCTCGTAATCGCATCCTCTACACAAACTCTCATGAATAGTATTTTTAAGGGACCTCAACGCTTAGACGATGTATTTTTTTTATTTGAGTGCAAAATTAATAAAATTAATAATAATTATTGTAGAAGTTTGAAAAATGTAATCACTCGTAATGAAAAGCTTTACAACTTTCTTGAAGGGGTCAACTCCGAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

START

Protein Analysis

697

Amino Acids

81.82

Weight (kDa)

7.49

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001615)

Species	Orthologous Gene IDs
malus_domestica	MD00G1174900.v1.1 MD01G1174900.v1.1
pyrus_communis	pycom01g02540 pycom02g08640 pycom02g21750 pycom05g02950 pycom05g07810 pycom07g08030 pycom11g21700 pycom13g23410 pycom16g13490 pycom17g16180
rosa_chinensis	RchiOBHm_Chr6g0247261 RchiOBHm_Chr7g0204481
rosa_laevigata	RLG00000007852 RLG00000013807 RLG00000018815 RLG00000023656 RLG00000036145 RLG00000036151
rosa_multiflora	Rmu_sc0000367.1_g000212
rosa_roxburghii	Rroxscaffold_1G00054610 Rroxscaffold_3G00223650 Rroxscaffold_4G00310010 Rroxscaffold_4G00326510 Rroxscaffold_5G00347060 Rroxscaffold_7G00200030
rosa_rugosa	Rorug02G0466400 Rorug04G0195600 Rorug06G0200000
rosa_samantha	Rh2DG335000 Rh4BG049400 Rh4CG056000 Rh4CG286000 Rh4DG269000 Rh6AG158900 Rh6AG260100 Rh6BG163100 Rh6BG263200 Rh6CG155300 Rh6CG155400 Rh6CG262200 Rh6CG325100 Rh6DG138200 Rh6DG148900 Rh6DG254100 Rh6DG254400 Rh6DG310900 Rh7DG185300
rosa_wichuraiana	Rw1G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	389
AccB1I	GGYRCC	2 cut(s)	389, 1039
AccII	CGCG	2 cut(s)	281, 1717
AciI	CCGC	2 cut(s)	281, 1717
AclWI	GGATC	2 cut(s)	1664, 1677
AcsI	RAATTY	4 cut(s)	70, 1464, 1584, 2085
AcuI	CTGAAG	1 cut(s)	953
AdeI	CACNNNGTG	1 cut(s)	1133
AfaI	GTAC	4 cut(s)	229, 391, 971, 1436
AfiI	CCNNNNNNNGG	1 cut(s)	1558
AflII	CTTAAG	1 cut(s)	199
AflIII	ACRYGT	1 cut(s)	1873
AluBI	AGCT	4 cut(s)	589, 683, 1405, 2053
AluI	AGCT	4 cut(s)	589, 683, 1405, 2053
Alw21I	GWGCWC	2 cut(s)	1201, 1621
Alw26I	GTCTC	1 cut(s)	588
Alw44I	GTGCAC	1 cut(s)	1617
AlwI	GGATC	2 cut(s)	1664, 1677
AoxI	GGCC	1 cut(s)	1184
ApaLI	GTGCAC	1 cut(s)	1617
ApoI	RAATTY	4 cut(s)	70, 1464, 1584, 2085
ArsI	GACNNNNNNTTYG	2 cut(s)	1128, 1160
AseI	ATTAAT	4 cut(s)	1272, 1677, 1992, 2001
Asp700I	GAANNNNTTC	1 cut(s)	1251
Asp718I	GGTACC	1 cut(s)	389
AspS9I	GGNCC	3 cut(s)	765, 1136, 1946
AsuC2I	CCSGG	1 cut(s)	1131
AsuHPI	GGTGA	2 cut(s)	162, 253
AvaII	GGWCC	3 cut(s)	765, 1136, 1946
BaeGI	GKGCMC	1 cut(s)	1621
BamHI	GGATCC	1 cut(s)	1669
BanI	GGYRCC	2 cut(s)	389, 1039
Bbv12I	GWGCWC	2 cut(s)	1201, 1621
BccI	CCATC	3 cut(s)	86, 527, 964
BclI	TGATCA	1 cut(s)	1498
BcnI	CCSGG	1 cut(s)	1131
BcoDI	GTCTC	1 cut(s)	588
BfaI	CTAG	4 cut(s)	185, 425, 684, 950
BfmI	CTRYAG	4 cut(s)	223, 1188, 1392, 1480
BfrI	CTTAAG	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	1131
Bme18I	GGWCC	3 cut(s)	765, 1136, 1946
BmgT120I	GGNCC	3 cut(s)	765, 1136, 1946
BmiI	GGNNCC	4 cut(s)	391, 1041, 1671, 1947
BmrFI	CCNGG	1 cut(s)	1131
BmsI	GCATC	4 cut(s)	238, 549, 1354, 1916
BplI	GAGNNNNNCTC	2 cut(s)	560, 592
BpuEI	CTTGAG	3 cut(s)	571, 602, 1259
BpuMI	CCSGG	1 cut(s)	1131
BsaWI	WCCGGW	1 cut(s)	1666
Bsc4I	CCNNNNNNNGG	1 cut(s)	1558
Bse1I	ACTGG	6 cut(s)	243, 411, 477, 787, 1256, 1449
Bse3DI	GCAATG	2 cut(s)	814, 1238
BseGI	GGATG	2 cut(s)	538, 1907
BseLI	CCNNNNNNNGG	1 cut(s)	1558
BseMI	GCAATG	2 cut(s)	814, 1238
BseMII	CTCAG	3 cut(s)	246, 581, 1419
BseNI	ACTGG	6 cut(s)	243, 411, 477, 787, 1256, 1449
BseRI	GAGGAG	2 cut(s)	1520, 1541
BseSI	GKGCMC	1 cut(s)	1621
BsgI	GTGCAG	1 cut(s)	1536
Bsh1236I	CGCG	2 cut(s)	281, 1717
BshFI	GGCC	1 cut(s)	1186
BshNI	GGYRCC	2 cut(s)	389, 1039
BsiHKAI	GWGCWC	2 cut(s)	1201, 1621
BsiSI	CCGG	3 cut(s)	1049, 1131, 1667
BslFI	GGGAC	1 cut(s)	1959
BslI	CCNNNNNNNGG	1 cut(s)	1558
BsmAI	GTCTC	1 cut(s)	588
BsmFI	GGGAC	1 cut(s)	1959
BsmI	GAATGC	1 cut(s)	525
BsnI	GGCC	1 cut(s)	1186
Bsp1286I	GDGCHC	2 cut(s)	1201, 1621
Bsp1407I	TGTACA	1 cut(s)	1434
Bsp143I	GATC	2 cut(s)	1498, 1669
BspACI	CCGC	2 cut(s)	281, 1717
BspANI	GGCC	1 cut(s)	1186
BspCNI	CTCAG	3 cut(s)	245, 582, 1420
BspFNI	CGCG	2 cut(s)	281, 1717
BspHI	TCATGA	3 cut(s)	52, 1219, 1926
BspLI	GGNNCC	4 cut(s)	391, 1041, 1671, 1947
BspMAI	CTGCAG	1 cut(s)	227
BspPI	GGATC	2 cut(s)	1664, 1677
BspT107I	GGYRCC	2 cut(s)	389, 1039
BspTI	CTTAAG	1 cut(s)	199
BsrDI	GCAATG	2 cut(s)	814, 1238
BsrGI	TGTACA	1 cut(s)	1434
BsrI	ACTGG	6 cut(s)	243, 411, 477, 787, 1256, 1449
BssMI	GATC	2 cut(s)	1498, 1669
Bst4CI	ACNGT	6 cut(s)	675, 823, 872, 1044, 1192, 1481
Bst6I	CTCTTC	1 cut(s)	929
BstAFI	CTTAAG	1 cut(s)	199
BstAUI	TGTACA	1 cut(s)	1434
BstDEI	CTNAG	4 cut(s)	232, 590, 1428, 1957
BstF5I	GGATG	2 cut(s)	538, 1907
BstFNI	CGCG	2 cut(s)	281, 1717
BstKTI	GATC	2 cut(s)	1501, 1672
BstMAI	GTCTC	1 cut(s)	588
BstMBI	GATC	2 cut(s)	1498, 1669
BstNSI	RCATGY	2 cut(s)	104, 1877
BstSCI	CCNGG	1 cut(s)	1129
BstSFI	CTRYAG	4 cut(s)	223, 1188, 1392, 1480
BstSLI	GKGCMC	1 cut(s)	1621
BstUI	CGCG	2 cut(s)	281, 1717
BstX2I	RGATCY	1 cut(s)	1669
BstXI	CCANNNNNNTGG	1 cut(s)	1146
BstYI	RGATCY	1 cut(s)	1669
BsuRI	GGCC	1 cut(s)	1186
BtsCI	GGATG	2 cut(s)	538, 1907
BtsIMutI	CAGTG	2 cut(s)	828, 868
CciI	TCATGA	3 cut(s)	52, 1219, 1926
Cfr13I	GGNCC	3 cut(s)	765, 1136, 1946
Csp6I	GTAC	4 cut(s)	228, 390, 970, 1435
CviJI	RGCY	8 cut(s)	121, 492, 589, 683, 955, 1186, 1405, 2053
CviKI_1	RGCY	8 cut(s)	121, 492, 589, 683, 955, 1186, 1405, 2053
CviQI	GTAC	4 cut(s)	228, 390, 970, 1435
DdeI	CTNAG	4 cut(s)	232, 590, 1428, 1957
DpnI	GATC	2 cut(s)	1500, 1671
DpnII	GATC	2 cut(s)	1498, 1669
DraI	TTTAAA	3 cut(s)	1062, 1411, 1777
DraIII	CACNNNGTG	1 cut(s)	1133
Eam1104I	CTCTTC	1 cut(s)	929
EarI	CTCTTC	1 cut(s)	929
Eco147I	AGGCCT	1 cut(s)	1186
Eco47I	GGWCC	3 cut(s)	765, 1136, 1946
Eco57I	CTGAAG	1 cut(s)	953
EcoO109I	RGGNCCY	2 cut(s)	765, 1946
FaqI	GGGAC	1 cut(s)	1959
FauI	CCCGC	1 cut(s)	1710
FbaI	TGATCA	1 cut(s)	1498
FokI	GGATG	2 cut(s)	545, 1894
FspBI	CTAG	4 cut(s)	185, 425, 684, 950
HaeIII	GGCC	1 cut(s)	1186
HapII	CCGG	3 cut(s)	1049, 1131, 1667
HincII	GTYRAC	2 cut(s)	678, 2077
HindII	GTYRAC	2 cut(s)	678, 2077
HindIII	AAGCTT	1 cut(s)	2051
HinfI	GANTC	6 cut(s)	428, 454, 1286, 1319, 1421, 1595
HpaII	CCGG	3 cut(s)	1049, 1131, 1667
HphI	GGTGA	2 cut(s)	162, 253
Hpy166II	GTNNAC	7 cut(s)	217, 678, 1136, 1547, 1619, 1700, 2077
Hpy188I	TCNGA	4 cut(s)	235, 267, 1318, 2083
Hpy8I	GTNNAC	7 cut(s)	217, 678, 1136, 1547, 1619, 1700, 2077
HpyAV	CCTTC	2 cut(s)	797, 2063
HpyCH4III	ACNGT	6 cut(s)	675, 823, 872, 1044, 1192, 1481
HpyF3I	CTNAG	4 cut(s)	232, 590, 1428, 1957
KpnI	GGTACC	1 cut(s)	393
Ksp22I	TGATCA	1 cut(s)	1498
Kzo9I	GATC	2 cut(s)	1498, 1669
LmnI	GCTCC	1 cut(s)	1528
LweI	GCATC	4 cut(s)	238, 549, 1354, 1916
MaeI	CTAG	4 cut(s)	185, 425, 684, 950
MaeIII	GTNAC	6 cut(s)	194, 241, 751, 823, 1101, 1709
MalI	GATC	2 cut(s)	1500, 1671
MboI	GATC	2 cut(s)	1498, 1669
MboII	GAAGA	5 cut(s)	83, 137, 298, 734, 946
MflI	RGATCY	1 cut(s)	1669
MhlI	GDGCHC	2 cut(s)	1201, 1621
MlyI	GAGTC	1 cut(s)	1280
MmeI	TCCRAC	2 cut(s)	628, 683
MroXI	GAANNNNTTC	1 cut(s)	1251
MslI	CAYNNNNRTG	2 cut(s)	1554, 1707
MspCI	CTTAAG	1 cut(s)	199
MspI	CCGG	3 cut(s)	1049, 1131, 1667
MspR9I	CCNGG	1 cut(s)	1131
Mva1269I	GAATGC	1 cut(s)	525
MvnI	CGCG	2 cut(s)	281, 1717
NciI	CCSGG	1 cut(s)	1131
NdeII	GATC	2 cut(s)	1498, 1669
NlaIV	GGNNCC	4 cut(s)	391, 1041, 1671, 1947
NmuCI	GTSAC	3 cut(s)	241, 823, 1709
NspI	RCATGY	2 cut(s)	104, 1877
PagI	TCATGA	3 cut(s)	52, 1219, 1926
PceI	AGGCCT	1 cut(s)	1186
PciI	ACATGT	1 cut(s)	1873
PctI	GAATGC	1 cut(s)	525
PdmI	GAANNNNTTC	1 cut(s)	1251
PfeI	GAWTC	5 cut(s)	428, 454, 1319, 1421, 1595
PleI	GAGTC	1 cut(s)	1280
PpsI	GAGTC	1 cut(s)	1280
PpuMI	RGGWCCY	2 cut(s)	765, 1946
PscI	ACATGT	1 cut(s)	1873
PshBI	ATTAAT	4 cut(s)	1272, 1677, 1992, 2001
Psp5II	RGGWCCY	2 cut(s)	765, 1946
PspN4I	GGNNCC	4 cut(s)	391, 1041, 1671, 1947
PspPI	GGNCC	3 cut(s)	765, 1136, 1946
PspPPI	RGGWCCY	2 cut(s)	765, 1946
PstI	CTGCAG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	1669
RsaI	GTAC	4 cut(s)	229, 391, 971, 1436
RsaNI	GTAC	4 cut(s)	228, 390, 970, 1435
RseI	CAYNNNNRTG	2 cut(s)	1554, 1707
Sau3AI	GATC	2 cut(s)	1498, 1669
Sau96I	GGNCC	3 cut(s)	765, 1136, 1946
SchI	GAGTC	1 cut(s)	1280
ScrFI	CCNGG	1 cut(s)	1131
SduI	GDGCHC	2 cut(s)	1201, 1621
SfaNI	GCATC	4 cut(s)	238, 549, 1354, 1916
SfcI	CTRYAG	4 cut(s)	223, 1188, 1392, 1480
SinI	GGWCC	3 cut(s)	765, 1136, 1946
SmiMI	CAYNNNNRTG	2 cut(s)	1554, 1707
SmlI	CTYRAG	4 cut(s)	199, 550, 581, 1238
SmoI	CTYRAG	4 cut(s)	199, 550, 581, 1238
SseBI	AGGCCT	1 cut(s)	1186
SsiI	CCGC	2 cut(s)	281, 1717
SspI	AATATT	4 cut(s)	165, 882, 1250, 1772
SspMI	CTAG	4 cut(s)	185, 425, 684, 950
StuI	AGGCCT	1 cut(s)	1186
StyD4I	CCNGG	1 cut(s)	1129
TaaI	ACNGT	6 cut(s)	675, 823, 872, 1044, 1192, 1481
TatI	WGTACW	2 cut(s)	969, 1434
TfiI	GAWTC	5 cut(s)	428, 454, 1319, 1421, 1595
TscAI	CASTG	2 cut(s)	828, 875
TseFI	GTSAC	3 cut(s)	241, 823, 1709
Tsp45I	GTSAC	3 cut(s)	241, 823, 1709
TspGWI	ACGGA	1 cut(s)	667
TspRI	CASTG	2 cut(s)	828, 875
Vha464I	CTTAAG	1 cut(s)	199
VneI	GTGCAC	1 cut(s)	1617
VpaK11BI	GGWCC	3 cut(s)	765, 1136, 1946
VspI	ATTAAT	4 cut(s)	1272, 1677, 1992, 2001
XapI	RAATTY	4 cut(s)	70, 1464, 1584, 2085
XbaI	TCTAGA	1 cut(s)	424
XceI	RCATGY	2 cut(s)	104, 1877
XmnI	GAANNNNTTC	1 cut(s)	1251
XspI	CTAG	4 cut(s)	185, 425, 684, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.