Rh2DG335000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001615
Physical Location & Seq
Forward (+)
43085469 .. 43085822
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG335000.1

Sequence Viewer

Length: 354 bp
ATGTCGCGGTTCAACCTCTTGACCATTAGGGCCTGCATTGACTTGATGTCGGTGTTGTTAGTGTCAAAGATTCACCAAATCACAGTGCTTAGGCTTCCACCTCCACTTGACGAGTTCGCGGCCGTTGGATTTGTTGCTGGAAATGCAATTCCAGTCCTTGAAGATCTCCTTGCAGGTTTTGTCGTACTTGGGAGAAGCATTAGGATCGTAGATCCAGGCTCCATGGGAGTAGTCACAGGACCCGACAGGCTCCGTCAGGTCAGATCTCGAGGGTTTCCGAAATTCGAGGGAGCTGTGAGGTTGGGAAGGAATGGAGGAGGTGTTTCTGATGCAAGAGAGCGGCGAAGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.79

Weight (kDa)

11.41

Isoelectric Point (pI)

55.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 164
AccBSI CCGCTC 1 cut(s) 340
AccII CGCG 2 cut(s) 7, 119
AciI CCGC 3 cut(s) 7, 119, 340
AclWI GGATC 2 cut(s) 206, 212
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 281
AfaI GTAC 1 cut(s) 186
AgsI TTSAA 2 cut(s) 13, 161
AhdI GACNNNNNGTC 1 cut(s) 46
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
AlwI GGATC 2 cut(s) 206, 212
Ama87I CYCGRG 1 cut(s) 267
AoxI GGCC 2 cut(s) 30, 120
ApoI RAATTY 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 30, 239
AsuHPI GGTGA 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 267
AvaII GGWCC 1 cut(s) 239
BccI CCATC 1 cut(s) 342
BceAI ACGGC 1 cut(s) 107
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BciT130I CCWGG 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 164
BglII AGATCT 2 cut(s) 163, 263
BisI GCNGC 2 cut(s) 120, 341
BlsI GCNGC 2 cut(s) 121, 342
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 239
BmeRI GACNNNNNGTC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 267
BmgT120I GGNCC 2 cut(s) 30, 239
BmiI GGNNCC 3 cut(s) 220, 241, 251
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 1 cut(s) 319
Bpu10I CCTNAGC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bse1I ACTGG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 330
BseX3I CGGCCG 1 cut(s) 120
Bsh1236I CGCG 2 cut(s) 7, 119
Bsh1285I CGRYCG 1 cut(s) 123
BshFI GGCC 2 cut(s) 32, 122
BsiEI CGRYCG 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 267
BsnI GGCC 2 cut(s) 32, 122
BsoBI CYCGRG 1 cut(s) 267
Bsp143I GATC 4 cut(s) 163, 204, 211, 263
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 3 cut(s) 7, 119, 340
BspANI GGCC 2 cut(s) 32, 122
BspFNI CGCG 2 cut(s) 7, 119
BspLI GGNNCC 3 cut(s) 220, 241, 251
BspMI ACCTGC 1 cut(s) 164
BspPI GGATC 2 cut(s) 206, 212
BsrBI CCGCTC 1 cut(s) 340
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 4 cut(s) 163, 204, 211, 263
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 89
BstDSI CCRYGG 1 cut(s) 222
BstFNI CGCG 2 cut(s) 7, 119
BstKTI GATC 4 cut(s) 166, 207, 214, 266
BstMBI GATC 4 cut(s) 163, 204, 211, 263
BstMCI CGRYCG 1 cut(s) 123
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 214
BstUI CGCG 2 cut(s) 7, 119
BstX2I RGATCY 3 cut(s) 163, 211, 263
BstYI RGATCY 3 cut(s) 163, 211, 263
BstZI CGGCCG 1 cut(s) 120
BsuRI GGCC 2 cut(s) 32, 122
BtgI CCRYGG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 90
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 30, 239
Csp6I GTAC 1 cut(s) 185
CviAII CATG 1 cut(s) 223
CviJI RGCY 6 cut(s) 32, 94, 122, 219, 250, 293
CviKI_1 RGCY 6 cut(s) 32, 94, 122, 219, 250, 293
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 1 cut(s) 89
DpnI GATC 4 cut(s) 165, 206, 213, 265
DpnII GATC 4 cut(s) 163, 204, 211, 263
DriI GACNNNNNGTC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 120
EagI CGGCCG 1 cut(s) 120
Eam1105I GACNNNNNGTC 1 cut(s) 46
EclXI CGGCCG 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 239
Eco52I CGGCCG 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 267
EcoO109I RGGNCCY 2 cut(s) 30, 239
EcoRII CCWGG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 1 cut(s) 226
FaiI YATR 1 cut(s) 224
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FatI CATG 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 120, 341
Fsp4HI GCNGC 2 cut(s) 120, 341
GluI GCNGC 2 cut(s) 120, 341
HaeIII GGCC 2 cut(s) 32, 122
Hin1II CATG 1 cut(s) 226
HinfI GANTC 1 cut(s) 70
HphI GGTGA 1 cut(s) 65
Hpy188I TCNGA 3 cut(s) 263, 279, 328
Hpy188III TCNNGA 2 cut(s) 19, 267
HpyAV CCTTC 1 cut(s) 300
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 4 cut(s) 36, 146, 173, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 89
Hsp92II CATG 1 cut(s) 226
Kzo9I GATC 4 cut(s) 163, 204, 211, 263
LmnI GCTCC 3 cut(s) 224, 255, 290
LpnPI CCDG 9 cut(s) 46, 123, 159, 165, 201, 222, 228, 232, 242
LweI GCATC 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 232
MalI GATC 4 cut(s) 165, 206, 213, 265
MbiI CCGCTC 1 cut(s) 340
MboI GATC 4 cut(s) 163, 204, 211, 263
MboII GAAGA 1 cut(s) 173
MflI RGATCY 3 cut(s) 163, 211, 263
MluCI AATT 2 cut(s) 147, 281
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 7 cut(s) 26, 111, 263, 280, 291, 308, 311
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MvnI CGCG 2 cut(s) 7, 119
MwoI GCNNNNNNNGC 1 cut(s) 143
NcoI CCATGG 1 cut(s) 222
NdeII GATC 4 cut(s) 163, 204, 211, 263
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 3 cut(s) 220, 241, 251
NmuCI GTSAC 1 cut(s) 232
PaeR7I CTCGAG 1 cut(s) 267
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 2 cut(s) 121, 342
PpuMI RGGWCCY 1 cut(s) 239
Psp5II RGGWCCY 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 220, 241, 251
PspPI GGNCC 2 cut(s) 30, 239
PspPPI RGGWCCY 1 cut(s) 239
PsuI RGATCY 3 cut(s) 163, 211, 263
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SatI GCNGC 2 cut(s) 120, 341
Sau3AI GATC 4 cut(s) 163, 204, 211, 263
Sau96I GGNCC 2 cut(s) 30, 239
ScrFI CCNGG 1 cut(s) 216
SetI ASST 7 cut(s) 18, 103, 178, 261, 295, 302, 322
SfaNI GCATC 1 cut(s) 319
Sfr274I CTCGAG 1 cut(s) 267
SinI GGWCC 1 cut(s) 239
SlaI CTCGAG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
Sse9I AATT 2 cut(s) 147, 281
SsiI CCGC 3 cut(s) 7, 119, 340
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 2 cut(s) 268, 285
TasI AATT 2 cut(s) 147, 281
TauI GCSGC 2 cut(s) 122, 343
TfiI GAWTC 1 cut(s) 70
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 232
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 1 cut(s) 281
XhoI CTCGAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.