RLG00000013807

protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001615
Physical Location & Seq
Forward (+)
41375983 .. 41378892
2910 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013807

Sequence Viewer

Length: 411 bp
ATGTTTGAGGAGCTGCTTTGTGAGGAAATTGCTGCAGCTGAGAGATCAATGGAAACTTTGATTGATTGGATTGATAGTGAAGTCAACATGAGCAATACTTATGTACTTTTTCGAACTTATGCTCCTGCATTTCAGATCACAGTGCTTAGGCTTCCACCTTCACTTGATGAGTTCGCAGCAGTTGGATTTGATGTTGGAAATGCAATTCCAGCCCTTGAAGATCTCCTTGCAGGTGTTGTCATACTTGGGAGAAGCAGTAGGGTCGTAGATCCAGGCTTTATCGGAGTAGTCGCAGGACCCGACTTGCTCCGTCAGGTCGGATCCCGGGTGTTTTCGGAATTCGAGGGAGCTGTGAGGTTGGGAAGGAACGGAAAAGGTGTTTCTAATGCAAGAGAGCGCCAAAGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

137

Amino Acids

14.95

Weight (kDa)

4.66

Isoelectric Point (pI)

50.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 221
Acc36I ACCTGC 1 cut(s) 221
AclWI GGATC 3 cut(s) 263, 315, 328
AcsI RAATTY 1 cut(s) 338
AfaI GTAC 1 cut(s) 105
AgsI TTSAA 1 cut(s) 218
AjnI CCWGG 1 cut(s) 271
AloI GAACNNNNNNTCC 2 cut(s) 106, 138
AluBI AGCT 3 cut(s) 13, 38, 350
AluI AGCT 3 cut(s) 13, 38, 350
AlwI GGATC 3 cut(s) 263, 315, 328
Ama87I CYCGRG 1 cut(s) 324
ApeKI GCWGC 4 cut(s) 13, 32, 35, 176
ApoI RAATTY 1 cut(s) 338
AspLEI GCGC 1 cut(s) 399
AspS9I GGNCC 1 cut(s) 296
AsuC2I CCSGG 2 cut(s) 325, 326
AsuII TTCGAA 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 324
AvaII GGWCC 1 cut(s) 296
BamHI GGATCC 1 cut(s) 320
BbvI GCAGC 3 cut(s) 19, 47, 188
BccI CCATC 1 cut(s) 399
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BciT130I CCWGG 1 cut(s) 273
BcnI CCSGG 2 cut(s) 325, 326
BfmI CTRYAG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 400
BfuAI ACCTGC 1 cut(s) 221
BglII AGATCT 1 cut(s) 220
BisI GCNGC 4 cut(s) 14, 33, 36, 177
BlsI GCNGC 4 cut(s) 15, 34, 37, 178
Bme1390I CCNGG 3 cut(s) 273, 325, 326
Bme18I GGWCC 1 cut(s) 296
BmeT110I CYCGRG 1 cut(s) 324
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 2 cut(s) 298, 322
BmrFI CCNGG 3 cut(s) 273, 325, 326
Bpu10I CCTNAGC 1 cut(s) 146
Bpu14I TTCGAA 1 cut(s) 112
BpuMI CCSGG 2 cut(s) 325, 326
BsaJI CCNNGG 1 cut(s) 324
BsaXI ACNNNNNCTCC 4 cut(s) 106, 136, 241, 271
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 30
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 3 cut(s) 19, 47, 188
BsiHKCI CYCGRG 1 cut(s) 324
BsiSI CCGG 1 cut(s) 325
BsoBI CYCGRG 1 cut(s) 324
Bsp119I TTCGAA 1 cut(s) 112
Bsp143I GATC 5 cut(s) 44, 135, 220, 268, 320
BspCNI CTCAG 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 298, 322
BspMAI CTGCAG 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 221
BspPI GGATC 3 cut(s) 263, 315, 328
BspT104I TTCGAA 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 5 cut(s) 44, 135, 220, 268, 320
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 1 cut(s) 142
BstBI TTCGAA 1 cut(s) 112
BstDEI CTNAG 2 cut(s) 39, 146
BstH2I RGCGCY 1 cut(s) 400
BstHHI GCGC 1 cut(s) 399
BstKTI GATC 5 cut(s) 47, 138, 223, 271, 323
BstMBI GATC 5 cut(s) 44, 135, 220, 268, 320
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 3 cut(s) 271, 323, 324
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 3 cut(s) 19, 47, 188
BstX2I RGATCY 3 cut(s) 220, 268, 320
BstYI RGATCY 3 cut(s) 220, 268, 320
BtsIMutI CAGTG 1 cut(s) 147
BveI ACCTGC 1 cut(s) 221
CfoI GCGC 1 cut(s) 399
Cfr13I GGNCC 1 cut(s) 296
Cfr9I CCCGGG 1 cut(s) 324
Csp6I GTAC 1 cut(s) 104
CviAII CATG 1 cut(s) 88
CviJI RGCY 6 cut(s) 13, 38, 151, 212, 276, 350
CviKI_1 RGCY 6 cut(s) 13, 38, 151, 212, 276, 350
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 2 cut(s) 39, 146
DpnI GATC 5 cut(s) 46, 137, 222, 270, 322
DpnII GATC 5 cut(s) 44, 135, 220, 268, 320
Eco47I GGWCC 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 324
EcoO109I RGGNCCY 1 cut(s) 296
EcoRI GAATTC 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 271
FaeI CATG 1 cut(s) 91
FaiI YATR 4 cut(s) 89, 102, 120, 242
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FatI CATG 1 cut(s) 87
Fnu4HI GCNGC 4 cut(s) 14, 33, 36, 177
Fsp4HI GCNGC 4 cut(s) 14, 33, 36, 177
GlaI GCGC 1 cut(s) 398
GluI GCNGC 4 cut(s) 14, 33, 36, 177
HaeII RGCGCY 1 cut(s) 400
HapII CCGG 1 cut(s) 325
HhaI GCGC 1 cut(s) 399
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HpaII CCGG 1 cut(s) 325
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 4 cut(s) 135, 284, 320, 337
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 2 cut(s) 168, 357
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 5 cut(s) 35, 128, 203, 230, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 2 cut(s) 39, 146
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 1 cut(s) 397
Kzo9I GATC 5 cut(s) 44, 135, 220, 268, 320
LmnI GCTCC 4 cut(s) 10, 127, 312, 347
LpnPI CCDG 8 cut(s) 138, 216, 222, 258, 279, 285, 299, 338
Lsp1109I GCAGC 3 cut(s) 19, 47, 188
MalI GATC 5 cut(s) 46, 137, 222, 270, 322
MboI GATC 5 cut(s) 44, 135, 220, 268, 320
MboII GAAGA 1 cut(s) 230
MflI RGATCY 3 cut(s) 220, 268, 320
MluCI AATT 3 cut(s) 27, 204, 338
MmeI TCCRAC 3 cut(s) 163, 175, 298
MnlI CCTC 3 cut(s) 16, 337, 348
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 1 cut(s) 325
MspR9I CCNGG 3 cut(s) 273, 325, 326
MvaI CCWGG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 209
NciI CCSGG 2 cut(s) 325, 326
NdeII GATC 5 cut(s) 44, 135, 220, 268, 320
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 2 cut(s) 298, 322
NspV TTCGAA 1 cut(s) 112
PaqCI CACCTGC 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PkrI GCNGC 4 cut(s) 15, 34, 37, 178
PpuMI RGGWCCY 1 cut(s) 296
Psp5II RGGWCCY 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 2 cut(s) 298, 322
PspPI GGNCC 1 cut(s) 296
PspPPI RGGWCCY 1 cut(s) 296
PstI CTGCAG 1 cut(s) 37
PsuI RGATCY 3 cut(s) 220, 268, 320
PvuII CAGCTG 1 cut(s) 38
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SatI GCNGC 4 cut(s) 14, 33, 36, 177
Sau3AI GATC 5 cut(s) 44, 135, 220, 268, 320
Sau96I GGNCC 1 cut(s) 296
ScrFI CCNGG 3 cut(s) 273, 325, 326
SetI ASST 8 cut(s) 15, 40, 160, 235, 318, 352, 359, 379
SfcI CTRYAG 1 cut(s) 33
SfuI TTCGAA 1 cut(s) 112
SinI GGWCC 1 cut(s) 296
SmaI CCCGGG 1 cut(s) 326
Sse9I AATT 3 cut(s) 27, 204, 338
StyD4I CCNGG 3 cut(s) 271, 323, 324
TaaI ACNGT 1 cut(s) 142
TaqI TCGA 2 cut(s) 112, 342
TasI AATT 3 cut(s) 27, 204, 338
TatI WGTACW 1 cut(s) 103
TscAI CASTG 1 cut(s) 147
TseI GCWGC 4 cut(s) 13, 32, 35, 176
TspGWI ACGGA 2 cut(s) 299, 384
TspMI CCCGGG 1 cut(s) 324
TspRI CASTG 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 296
XapI RAATTY 1 cut(s) 338
XmaI CCCGGG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.