Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001615

Physical Location & Seq

Genomic Coordinates Forward (+)

54341105 .. 54341458

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG286000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCGCGGTTCAACCTCTTGACTGTTAGGGCCGACATAGACTTGATGTCGACGCCGTTAGTGTCGGAGATTCGCCAGATCACAGTGCTTAGGCTTCCACCTCCACTTGATGAGTTCGCGGTCGTTGGATTTGTTGTTGGAAATGCAATTCCAGCCCTTGAAGATCTCCTTGCAGGTGTTGTCGTACTTGGGAGAAGCATTAGGGTCGTAGATCCAGGCTCCATCGGAGTAGTCGCAGGACCCAACCGGCTCCGTCAGGTCGGATCTCGGGGGTTTCCGGAATTCGAGGGAGCTGTGAGGTTGGGAAGGAACAGAGGAGGTGTTTCTGATGCAAGAGAGTGGCAAAGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.72

Weight (kDa)

10.89

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001615)

Species	Orthologous Gene IDs
malus_domestica	MD00G1174900.v1.1 MD01G1174900.v1.1
pyrus_communis	pycom01g02540 pycom02g08640 pycom02g21750 pycom05g02950 pycom05g07810 pycom07g08030 pycom11g21700 pycom13g23410 pycom16g13490 pycom17g16180
rosa_chinensis	RchiOBHm_Chr6g0247261 RchiOBHm_Chr7g0204481
rosa_laevigata	RLG00000007852 RLG00000013807 RLG00000018815 RLG00000023656 RLG00000036145 RLG00000036151
rosa_multiflora	Rmu_sc0000367.1_g000212
rosa_roxburghii	Rroxscaffold_1G00054610 Rroxscaffold_3G00223650 Rroxscaffold_4G00310010 Rroxscaffold_4G00326510 Rroxscaffold_5G00347060 Rroxscaffold_7G00200030
rosa_rugosa	Rorug02G0466400 Rorug04G0195600 Rorug06G0200000
rosa_samantha	Rh2DG335000 Rh4BG049400 Rh4CG056000 Rh4CG286000 Rh4DG269000 Rh6AG158900 Rh6AG260100 Rh6BG163100 Rh6BG263200 Rh6CG155300 Rh6CG155400 Rh6CG262200 Rh6CG325100 Rh6DG138200 Rh6DG148900 Rh6DG254100 Rh6DG254400 Rh6DG310900 Rh7DG185300
rosa_wichuraiana	Rw1G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	164
Acc36I	ACCTGC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	50
AccII	CGCG	2 cut(s)	7, 119
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	2 cut(s)	7, 119
AclWI	GGATC	2 cut(s)	206, 271
AcsI	RAATTY	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	1 cut(s)	186
AgsI	TTSAA	2 cut(s)	13, 161
AhdI	GACNNNNNGTC	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
AlwI	GGATC	2 cut(s)	206, 271
Ama87I	CYCGRG	1 cut(s)	267
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	30, 239
AvaI	CYCGRG	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	239
BccI	CCATC	2 cut(s)	230, 342
BceAI	ACGGC	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BciT130I	CCWGG	1 cut(s)	216
BfuAI	ACCTGC	1 cut(s)	164
BglII	AGATCT	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	239
BmeRI	GACNNNNNGTC	1 cut(s)	46
BmeT110I	CYCGRG	1 cut(s)	267
BmgT120I	GGNCC	2 cut(s)	30, 239
BmiI	GGNNCC	3 cut(s)	220, 241, 251
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	319
Bpu10I	CCTNAGC	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	53
BsaWI	WCCGGW	1 cut(s)	277
Bse118I	RCCGGY	1 cut(s)	246
BseAI	TCCGGA	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	216
BseRI	GAGGAG	1 cut(s)	330
Bsh1236I	CGCG	2 cut(s)	7, 119
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	267
BsiSI	CCGG	2 cut(s)	247, 278
BsnI	GGCC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	267
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	4 cut(s)	78, 163, 211, 263
BspACI	CCGC	2 cut(s)	7, 119
BspANI	GGCC	1 cut(s)	32
BspEI	TCCGGA	1 cut(s)	277
BspFNI	CGCG	2 cut(s)	7, 119
BspLI	GGNNCC	3 cut(s)	220, 241, 251
BspMI	ACCTGC	1 cut(s)	164
BspPI	GGATC	2 cut(s)	206, 271
BsrFI	RCCGGY	1 cut(s)	246
BssAI	RCCGGY	1 cut(s)	246
BssMI	GATC	4 cut(s)	78, 163, 211, 263
BssNI	GRCGYC	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	25, 85
BstACI	GRCGYC	1 cut(s)	53
BstDEI	CTNAG	1 cut(s)	89
BstFNI	CGCG	2 cut(s)	7, 119
BstKTI	GATC	4 cut(s)	81, 166, 214, 266
BstMBI	GATC	4 cut(s)	78, 163, 211, 263
BstMCI	CGRYCG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstUI	CGCG	2 cut(s)	7, 119
BstX2I	RGATCY	3 cut(s)	163, 211, 263
BstYI	RGATCY	3 cut(s)	163, 211, 263
BsuRI	GGCC	1 cut(s)	32
BtsIMutI	CAGTG	1 cut(s)	90
BveI	ACCTGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	246
Cfr13I	GGNCC	2 cut(s)	30, 239
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	185
CviJI	RGCY	6 cut(s)	32, 94, 155, 219, 250, 293
CviKI_1	RGCY	6 cut(s)	32, 94, 155, 219, 250, 293
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	4 cut(s)	80, 165, 213, 265
DpnII	GATC	4 cut(s)	78, 163, 211, 263
DriI	GACNNNNNGTC	1 cut(s)	46
Eam1105I	GACNNNNNGTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	267
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRI	GAATTC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	214
FaiI	YATR	1 cut(s)	38
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FblI	GTMKAC	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	2 cut(s)	247, 278
HgaI	GACGC	1 cut(s)	61
Hin1I	GRCGYC	1 cut(s)	53
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	2 cut(s)	247, 278
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	4 cut(s)	67, 227, 263, 328
Hpy188III	TCNNGA	2 cut(s)	19, 278
Hpy8I	GTNNAC	1 cut(s)	51
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	300
HpyCH4III	ACNGT	2 cut(s)	25, 85
HpyCH4V	TGCA	3 cut(s)	146, 173, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	89
Hsp92I	GRCGYC	1 cut(s)	53
Kpn2I	TCCGGA	1 cut(s)	277
Kzo9I	GATC	4 cut(s)	78, 163, 211, 263
LmnI	GCTCC	3 cut(s)	224, 255, 290
LpnPI	CCDG	9 cut(s)	89, 159, 165, 201, 222, 228, 242, 260, 291
LweI	GCATC	1 cut(s)	319
MalI	GATC	4 cut(s)	80, 165, 213, 265
MboI	GATC	4 cut(s)	78, 163, 211, 263
MboII	GAAGA	1 cut(s)	173
MflI	RGATCY	3 cut(s)	163, 211, 263
MluCI	AATT	2 cut(s)	147, 281
MmeI	TCCRAC	4 cut(s)	45, 106, 118, 241
MnlI	CCTC	6 cut(s)	26, 111, 280, 291, 308, 311
MroI	TCCGGA	1 cut(s)	277
MspI	CCGG	2 cut(s)	247, 278
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MvnI	CGCG	2 cut(s)	7, 119
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeII	GATC	4 cut(s)	78, 163, 211, 263
NlaIV	GGNNCC	3 cut(s)	220, 241, 251
PaqCI	CACCTGC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	70
PpuMI	RGGWCCY	1 cut(s)	239
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	3 cut(s)	220, 241, 251
PspPI	GGNCC	2 cut(s)	30, 239
PspPPI	RGGWCCY	1 cut(s)	239
PsuI	RGATCY	3 cut(s)	163, 211, 263
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
SalI	GTCGAC	1 cut(s)	49
Sau3AI	GATC	4 cut(s)	78, 163, 211, 263
Sau96I	GGNCC	2 cut(s)	30, 239
ScrFI	CCNGG	1 cut(s)	216
SetI	ASST	7 cut(s)	18, 103, 178, 261, 295, 302, 322
SfaNI	GCATC	1 cut(s)	319
SinI	GGWCC	1 cut(s)	239
Sse9I	AATT	2 cut(s)	147, 281
SsiI	CCGC	2 cut(s)	7, 119
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	2 cut(s)	25, 85
TaqI	TCGA	2 cut(s)	50, 285
TasI	AATT	2 cut(s)	147, 281
TfiI	GAWTC	1 cut(s)	70
TscAI	CASTG	1 cut(s)	90
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	239
XapI	RAATTY	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.