Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000367.1

Orthogroup ID

OG0001615

Physical Location & Seq

Genomic Coordinates Forward (+)

1003570 .. 1008618

Gene Structure 5049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000367.1_g000212.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atgaatgccatgggggtgtcaacaataaaatcgttttctgctttcaactcaattttatttttattagacgatgaagccccagatgatcagagccaattcgaagttcagggagagactgcaggaagtgctgaaatggtgctcaatgaagatgattgtaagaatttttctgctttcaactcaattttatttttattagacgatgaagccgcagatgatcagagccaattcgaagttcagggagagactgcaggaagtgctgaaatggtgctcaatgaagatgattatgagtttagtgcggttttgaagcgtgaatcgaatccgaagatattgatcaccacttgccgatttaactcttctaggggtcctgcttttatagaggaactactttcggtgatcccaaatgcgcagtactataaaagagacacttatgacttgaaaaaggtaccatttctgtacatttttgaaaccaaagagactaaacaggctgaagtaaagggcaaaaggaccaaggattccaaagttgacgctattactgaagcaaaaccatttgcgcgcctacagatcttaacggtctttcctgtcttaaacactcaggaatgtggtcctcgttttacccttaaattgatcagtctgcagcacgggacatttgatcctagaggcggggagtttgagtgggttcacaagcttcacaacaagcttggaggtgatgcaaataagaatatagtgcacatgatgcttggtaaggtgacacatgaagctagatatagctctgcgccaaagcgacgccattggattagtgtaaaagatatctttcgatacttgagatgtatgagtgatatgggcttgttctatgcctataaagagattatggattcggacccatcacacaccaggaacgccgccaacactggcctgcgtccactatccccatcccaaaacgacatgtgttttggaaggttttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

321

Amino Acids

36.39

Weight (kDa)

5.49

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001615)

Species	Orthologous Gene IDs
malus_domestica	MD00G1174900.v1.1 MD01G1174900.v1.1
pyrus_communis	pycom01g02540 pycom02g08640 pycom02g21750 pycom05g02950 pycom05g07810 pycom07g08030 pycom11g21700 pycom13g23410 pycom16g13490 pycom17g16180
rosa_chinensis	RchiOBHm_Chr6g0247261 RchiOBHm_Chr7g0204481
rosa_laevigata	RLG00000007852 RLG00000013807 RLG00000018815 RLG00000023656 RLG00000036145 RLG00000036151
rosa_multiflora	Rmu_sc0000367.1_g000212
rosa_roxburghii	Rroxscaffold_1G00054610 Rroxscaffold_3G00223650 Rroxscaffold_4G00310010 Rroxscaffold_4G00326510 Rroxscaffold_5G00347060 Rroxscaffold_7G00200030
rosa_rugosa	Rorug02G0466400 Rorug04G0195600 Rorug06G0200000
rosa_samantha	Rh2DG335000 Rh4BG049400 Rh4CG056000 Rh4CG286000 Rh4DG269000 Rh6AG158900 Rh6AG260100 Rh6BG163100 Rh6BG263200 Rh6CG155300 Rh6CG155400 Rh6CG262200 Rh6CG325100 Rh6DG138200 Rh6DG148900 Rh6DG254100 Rh6DG254400 Rh6DG310900 Rh7DG185300
rosa_wichuraiana	Rw1G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	405
Acc65I	GGTACC	1 cut(s)	442
AccB1I	GGYRCC	1 cut(s)	442
AccII	CGCG	1 cut(s)	553
AciI	CCGC	4 cut(s)	207, 296, 660, 900
AclWI	GGATC	2 cut(s)	388, 644
AcsI	RAATTY	1 cut(s)	160
AcuI	CTGAAG	2 cut(s)	507, 555
AcyI	GRCGYC	1 cut(s)	784
AfaI	GTAC	3 cut(s)	410, 444, 455
AfiI	CCNNNNNNNGG	1 cut(s)	659
AflIII	ACRYGT	1 cut(s)	942
AgsI	TTSAA	5 cut(s)	46, 175, 304, 436, 464
AjnI	CCWGG	1 cut(s)	890
AjuI	GAANNNNNNNTTGG	4 cut(s)	87, 119, 216, 248
AluBI	AGCT	4 cut(s)	685, 697, 758, 768
AluI	AGCT	4 cut(s)	685, 697, 758, 768
Alw21I	GWGCWC	3 cut(s)	141, 270, 729
Alw26I	GTCTC	4 cut(s)	107, 236, 414, 467
Alw44I	GTGCAC	1 cut(s)	725
AlwI	GGATC	2 cut(s)	388, 644
AoxI	GGCC	1 cut(s)	910
ApaLI	GTGCAC	1 cut(s)	725
ApeKI	GCWGC	1 cut(s)	634
ApoI	RAATTY	1 cut(s)	160
ArsI	GACNNNNNNTTYG	2 cut(s)	932, 964
Asp718I	GGTACC	1 cut(s)	442
AspLEI	GCGC	4 cut(s)	406, 553, 555, 775
AspS9I	GGNCC	4 cut(s)	362, 504, 602, 877
AsuHPI	GGTGA	4 cut(s)	325, 403, 716, 757
AsuII	TTCGAA	2 cut(s)	99, 228
AvaII	GGWCC	4 cut(s)	362, 504, 602, 877
BaeGI	GKGCMC	1 cut(s)	729
BanI	GGYRCC	1 cut(s)	442
Bbv12I	GWGCWC	3 cut(s)	141, 270, 729
BbvI	GCAGC	1 cut(s)	646
BccI	CCATC	2 cut(s)	889, 937
BciT130I	CCWGG	1 cut(s)	892
BclI	TGATCA	4 cut(s)	85, 214, 330, 624
BcoDI	GTCTC	4 cut(s)	107, 236, 414, 467
BfaI	CTAG	3 cut(s)	357, 654, 759
BfmI	CTRYAG	4 cut(s)	117, 246, 557, 632
BglII	AGATCT	1 cut(s)	561
BisI	GCNGC	3 cut(s)	207, 635, 900
BlsI	GCNGC	3 cut(s)	208, 636, 901
BmcAI	AGTACT	1 cut(s)	410
Bme1390I	CCNGG	1 cut(s)	892
Bme18I	GGWCC	4 cut(s)	362, 504, 602, 877
BmgT120I	GGNCC	4 cut(s)	362, 504, 602, 877
BmiI	GGNNCC	3 cut(s)	363, 444, 879
BmrFI	CCNGG	1 cut(s)	892
BmsI	GCATC	2 cut(s)	697, 723
Bpu14I	TTCGAA	2 cut(s)	99, 228
BpuEI	CTTGAG	1 cut(s)	841
BsaBI	GATNNNNATC	1 cut(s)	329
BsaHI	GRCGYC	1 cut(s)	784
BsaJI	CCNNGG	2 cut(s)	9, 507
BsaXI	ACNNNNNCTCC	2 cut(s)	656, 686
Bsc4I	CCNNNNNNNGG	1 cut(s)	659
Bse1I	ACTGG	1 cut(s)	913
Bse8I	GATNNNNATC	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	892
BseDI	CCNNGG	2 cut(s)	9, 507
BseGI	GGATG	1 cut(s)	929
BseJI	GATNNNNATC	1 cut(s)	329
BseLI	CCNNNNNNNGG	1 cut(s)	659
BseMII	CTCAG	1 cut(s)	605
BseNI	ACTGG	1 cut(s)	913
BsePI	GCGCGC	1 cut(s)	551
BseSI	GKGCMC	1 cut(s)	729
BseXI	GCAGC	1 cut(s)	646
Bsh1236I	CGCG	1 cut(s)	553
BshFI	GGCC	1 cut(s)	912
BshNI	GGYRCC	1 cut(s)	442
BsiHKAI	GWGCWC	3 cut(s)	141, 270, 729
BslFI	GGGAC	1 cut(s)	655
BslI	CCNNNNNNNGG	1 cut(s)	659
BsmAI	GTCTC	4 cut(s)	107, 236, 414, 467
BsmFI	GGGAC	1 cut(s)	655
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	912
Bsp119I	TTCGAA	2 cut(s)	99, 228
Bsp1286I	GDGCHC	3 cut(s)	141, 270, 729
Bsp1407I	TGTACA	1 cut(s)	453
Bsp143I	GATC	7 cut(s)	85, 214, 330, 393, 561, 624, 649
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	4 cut(s)	207, 296, 660, 900
BspANI	GGCC	1 cut(s)	912
BspCNI	CTCAG	1 cut(s)	604
BspFNI	CGCG	1 cut(s)	553
BspLI	GGNNCC	3 cut(s)	363, 444, 879
BspMAI	CTGCAG	3 cut(s)	121, 250, 636
BspPI	GGATC	2 cut(s)	388, 644
BspT104I	TTCGAA	2 cut(s)	99, 228
BspT107I	GGYRCC	1 cut(s)	442
BsrGI	TGTACA	1 cut(s)	453
BsrI	ACTGG	1 cut(s)	913
BssECI	CCNNGG	2 cut(s)	9, 507
BssHII	GCGCGC	1 cut(s)	551
BssMI	GATC	7 cut(s)	85, 214, 330, 393, 561, 624, 649
BssNI	GRCGYC	1 cut(s)	784
BssT1I	CCWWGG	2 cut(s)	9, 507
Bst2UI	CCWGG	1 cut(s)	892
Bst4CI	ACNGT	1 cut(s)	571
Bst6I	CTCTTC	1 cut(s)	358
BstACI	GRCGYC	1 cut(s)	784
BstAPI	GCANNNNNTGC	3 cut(s)	125, 254, 733
BstAUI	TGTACA	1 cut(s)	453
BstBI	TTCGAA	2 cut(s)	99, 228
BstC8I	GCNNGC	2 cut(s)	553, 914
BstDEI	CTNAG	1 cut(s)	591
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	929
BstFNI	CGCG	1 cut(s)	553
BstHHI	GCGC	4 cut(s)	406, 553, 555, 775
BstKTI	GATC	7 cut(s)	88, 217, 333, 396, 564, 627, 652
BstMAI	GTCTC	4 cut(s)	107, 236, 414, 467
BstMBI	GATC	7 cut(s)	85, 214, 330, 393, 561, 624, 649
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 254, 733
BstNI	CCWGG	1 cut(s)	892
BstNSI	RCATGY	1 cut(s)	946
BstSCI	CCNGG	1 cut(s)	890
BstSFI	CTRYAG	4 cut(s)	117, 246, 557, 632
BstSLI	GKGCMC	1 cut(s)	729
BstUI	CGCG	1 cut(s)	553
BstV1I	GCAGC	1 cut(s)	646
BstX2I	RGATCY	1 cut(s)	561
BstYI	RGATCY	1 cut(s)	561
BsuRI	GGCC	1 cut(s)	912
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	929
BtsIMutI	CAGTG	1 cut(s)	906
Cac8I	GCNNGC	2 cut(s)	553, 914
CfoI	GCGC	4 cut(s)	406, 553, 555, 775
Cfr13I	GGNCC	4 cut(s)	362, 504, 602, 877
CseI	GACGC	3 cut(s)	533, 792, 905
Csp6I	GTAC	3 cut(s)	409, 443, 454
CviAII	CATG	4 cut(s)	10, 730, 752, 943
CviQI	GTAC	3 cut(s)	409, 443, 454
DdeI	CTNAG	1 cut(s)	591
DpnI	GATC	7 cut(s)	87, 216, 332, 395, 563, 626, 651
DpnII	GATC	7 cut(s)	85, 214, 330, 393, 561, 624, 649
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Eco130I	CCWWGG	2 cut(s)	9, 507
Eco32I	GATATC	1 cut(s)	808
Eco47I	GGWCC	4 cut(s)	362, 504, 602, 877
Eco57I	CTGAAG	2 cut(s)	507, 555
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	890
EcoRV	GATATC	1 cut(s)	808
EcoT14I	CCWWGG	2 cut(s)	9, 507
ErhI	CCWWGG	2 cut(s)	9, 507
FaeI	CATG	4 cut(s)	13, 733, 755, 946
FalI	AAGNNNNNCTT	2 cut(s)	409, 441
FaqI	GGGAC	1 cut(s)	655
FatI	CATG	4 cut(s)	9, 729, 751, 942
FauI	CCCGC	1 cut(s)	653
FbaI	TGATCA	4 cut(s)	85, 214, 330, 624
Fnu4HI	GCNGC	3 cut(s)	207, 635, 900
FokI	GGATG	1 cut(s)	916
Fsp4HI	GCNGC	3 cut(s)	207, 635, 900
FspBI	CTAG	3 cut(s)	357, 654, 759
FspI	TGCGCA	1 cut(s)	405
GlaI	GCGC	4 cut(s)	405, 552, 554, 774
GluI	GCNGC	3 cut(s)	207, 635, 900
HaeIII	GGCC	1 cut(s)	912
HgaI	GACGC	3 cut(s)	533, 792, 905
HhaI	GCGC	4 cut(s)	406, 553, 555, 775
Hin1I	GRCGYC	1 cut(s)	784
Hin1II	CATG	4 cut(s)	13, 733, 755, 946
Hin6I	GCGC	4 cut(s)	404, 551, 553, 773
HinP1I	GCGC	4 cut(s)	404, 551, 553, 773
HincII	GTYRAC	2 cut(s)	21, 523
HindII	GTYRAC	2 cut(s)	21, 523
HindIII	AAGCTT	2 cut(s)	683, 695
HinfI	GANTC	4 cut(s)	311, 316, 512, 872
HphI	GGTGA	4 cut(s)	325, 403, 716, 757
Hpy166II	GTNNAC	5 cut(s)	21, 523, 679, 727, 920
Hpy188I	TCNGA	4 cut(s)	90, 219, 321, 877
Hpy188III	TCNNGA	1 cut(s)	593
Hpy8I	GTNNAC	5 cut(s)	21, 523, 679, 727, 920
Hpy99I	CGWCG	1 cut(s)	786
HpyAV	CCTTC	1 cut(s)	948
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4V	TGCA	5 cut(s)	119, 248, 634, 710, 727
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 254, 733
HpyF3I	CTNAG	1 cut(s)	591
Hsp92I	GRCGYC	1 cut(s)	784
Hsp92II	CATG	4 cut(s)	13, 733, 755, 946
HspAI	GCGC	4 cut(s)	404, 551, 553, 773
KpnI	GGTACC	1 cut(s)	446
Ksp22I	TGATCA	4 cut(s)	85, 214, 330, 624
Kzo9I	GATC	7 cut(s)	85, 214, 330, 393, 561, 624, 649
Lsp1109I	GCAGC	1 cut(s)	646
LweI	GCATC	2 cut(s)	697, 723
MaeI	CTAG	3 cut(s)	357, 654, 759
MaeIII	GTNAC	1 cut(s)	745
MalI	GATC	7 cut(s)	87, 216, 332, 395, 563, 626, 651
MboI	GATC	7 cut(s)	85, 214, 330, 393, 561, 624, 649
MboII	GAAGA	4 cut(s)	158, 287, 334, 345
MflI	RGATCY	1 cut(s)	561
MhlI	GDGCHC	3 cut(s)	141, 270, 729
MluCI	AATT	6 cut(s)	51, 95, 160, 180, 224, 620
MnlI	CCTC	4 cut(s)	370, 615, 650, 695
MseI	TTAA	4 cut(s)	348, 566, 584, 618
MslI	CAYNNNNRTG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	892
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	892
MvnI	CGCG	1 cut(s)	553
MwoI	GCNNNNNNNGC	3 cut(s)	125, 254, 733
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	7 cut(s)	85, 214, 330, 393, 561, 624, 649
NlaIII	CATG	4 cut(s)	13, 733, 755, 946
NlaIV	GGNNCC	3 cut(s)	363, 444, 879
NmuCI	GTSAC	1 cut(s)	745
NsbI	TGCGCA	1 cut(s)	405
NspI	RCATGY	1 cut(s)	946
NspV	TTCGAA	2 cut(s)	99, 228
PauI	GCGCGC	1 cut(s)	551
PciI	ACATGT	1 cut(s)	942
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	4 cut(s)	311, 316, 512, 872
PkrI	GCNGC	3 cut(s)	208, 636, 901
PpuMI	RGGWCCY	1 cut(s)	362
PscI	ACATGT	1 cut(s)	942
Psp5II	RGGWCCY	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	890
PspGI	CCWGG	1 cut(s)	890
PspN4I	GGNNCC	3 cut(s)	363, 444, 879
PspPI	GGNCC	4 cut(s)	362, 504, 602, 877
PspPPI	RGGWCCY	1 cut(s)	362
PstI	CTGCAG	3 cut(s)	121, 250, 636
PsuI	RGATCY	1 cut(s)	561
PteI	GCGCGC	1 cut(s)	551
RsaI	GTAC	3 cut(s)	410, 444, 455
RsaNI	GTAC	3 cut(s)	409, 443, 454
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	4 cut(s)	348, 566, 584, 618
SatI	GCNGC	3 cut(s)	207, 635, 900
Sau3AI	GATC	7 cut(s)	85, 214, 330, 393, 561, 624, 649
Sau96I	GGNCC	4 cut(s)	362, 504, 602, 877
ScaI	AGTACT	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	892
SduI	GDGCHC	3 cut(s)	141, 270, 729
SetI	ASST	8 cut(s)	444, 687, 699, 706, 747, 760, 770, 959
SfaNI	GCATC	2 cut(s)	697, 723
SfcI	CTRYAG	4 cut(s)	117, 246, 557, 632
SfuI	TTCGAA	2 cut(s)	99, 228
SinI	GGWCC	4 cut(s)	362, 504, 602, 877
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	820
SmoI	CTYRAG	1 cut(s)	820
Sse9I	AATT	6 cut(s)	51, 95, 160, 180, 224, 620
SsiI	CCGC	4 cut(s)	207, 296, 660, 900
SspMI	CTAG	3 cut(s)	357, 654, 759
StyD4I	CCNGG	1 cut(s)	890
StyI	CCWWGG	2 cut(s)	9, 507
TaaI	ACNGT	1 cut(s)	571
TaqI	TCGA	4 cut(s)	99, 228, 314, 814
TasI	AATT	6 cut(s)	51, 95, 160, 180, 224, 620
TatI	WGTACW	2 cut(s)	408, 453
TauI	GCSGC	2 cut(s)	209, 902
TfiI	GAWTC	4 cut(s)	311, 316, 512, 872
Tru1I	TTAA	4 cut(s)	348, 566, 584, 618
Tru9I	TTAA	4 cut(s)	348, 566, 584, 618
TscAI	CASTG	1 cut(s)	913
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	1 cut(s)	634
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	6 cut(s)	17, 87, 159, 216, 288, 768
TspRI	CASTG	1 cut(s)	913
VneI	GTGCAC	1 cut(s)	725
VpaK11BI	GGWCC	4 cut(s)	362, 504, 602, 877
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	1 cut(s)	946
XspI	CTAG	3 cut(s)	357, 654, 759
ZrmI	AGTACT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.