Rh6DG310900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001615
Physical Location & Seq
Reverse (-)
51181881 .. 51182141
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG310900.1

Sequence Viewer

Length: 261 bp
ATGTTTAAGTTGAAGAACAAAACCCTCTTGATGGTTATGCTAGTAGTGGTTTCCTTGTTGGTCATTCTTGCAGCTGCAGCCGGTCGGCCTTTAGGACATGGCAGCAGCAGTGGCAGGATGATGAAACAGATGAGCACTACTACTTTTGGTGTGAAATCCAAGGCGACGGCGGCGGTGACATCTTTAGACCCGCAGGATAAAGGGGATGTGCCGCGTTGTGGCAACCCACGCACCAACGTCCCCAAACCCGGCCATTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.05

Weight (kDa)

10.46

Isoelectric Point (pI)

25.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 214
AciI CCGC 4 cut(s) 170, 173, 191, 212
AcoI YGGCCR 1 cut(s) 250
AfiI CCNNNNNNNGG 3 cut(s) 31, 218, 248
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 137
AoxI GGCC 2 cut(s) 86, 250
ApeKI GCWGC 5 cut(s) 71, 74, 77, 102, 105
AsuC2I CCSGG 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 137
BbvI GCAGC 5 cut(s) 61, 83, 89, 114, 117
BccI CCATC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 183
BcnI CCSGG 1 cut(s) 249
BfaI CTAG 2 cut(s) 41, 259
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 7 cut(s) 72, 75, 78, 103, 106, 171, 212
BlsI GCNGC 7 cut(s) 73, 76, 79, 104, 107, 172, 213
Bme1390I CCNGG 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 218, 248
Bse118I RCCGGY 1 cut(s) 80
Bse3DI GCAATG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 2 cut(s) 123, 211
BseLI CCNNNNNNNGG 3 cut(s) 31, 218, 248
BseMI GCAATG 1 cut(s) 253
BseXI GCAGC 5 cut(s) 61, 83, 89, 114, 117
Bsh1236I CGCG 1 cut(s) 214
Bsh1285I CGRYCG 1 cut(s) 85
BshFI GGCC 2 cut(s) 88, 252
BsiEI CGRYCG 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 2 cut(s) 81, 249
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 3 cut(s) 31, 218, 248
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 2 cut(s) 88, 252
Bsp1286I GDGCHC 1 cut(s) 137
BspACI CCGC 4 cut(s) 170, 173, 191, 212
BspANI GGCC 2 cut(s) 88, 252
BspFNI CGCG 1 cut(s) 214
BspMAI CTGCAG 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 253
BsrFI RCCGGY 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 159
BstF5I GGATG 2 cut(s) 123, 211
BstFNI CGCG 1 cut(s) 214
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 4 cut(s) 77, 111, 170, 228
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 75
BstUI CGCG 1 cut(s) 214
BstV1I GCAGC 5 cut(s) 61, 83, 89, 114, 117
BsuRI GGCC 2 cut(s) 88, 252
BtsCI GGATG 2 cut(s) 123, 211
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 80
CviAII CATG 1 cut(s) 98
CviJI RGCY 4 cut(s) 74, 80, 88, 252
CviKI_1 RGCY 4 cut(s) 74, 80, 88, 252
EaeI YGGCCR 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 1 cut(s) 101
FaiI YATR 2 cut(s) 38, 99
FaqI GGGAC 1 cut(s) 224
FatI CATG 1 cut(s) 97
FauI CCCGC 1 cut(s) 198
Fnu4HI GCNGC 7 cut(s) 72, 75, 78, 103, 106, 171, 212
FokI GGATG 2 cut(s) 130, 218
Fsp4HI GCNGC 7 cut(s) 72, 75, 78, 103, 106, 171, 212
FspBI CTAG 2 cut(s) 41, 259
GluI GCNGC 7 cut(s) 72, 75, 78, 103, 106, 171, 212
HaeIII GGCC 2 cut(s) 88, 252
HapII CCGG 2 cut(s) 81, 249
Hin1II CATG 1 cut(s) 101
HpaII CCGG 2 cut(s) 81, 249
HphI GGTGA 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 28
Hpy99I CGWCG 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 2 cut(s) 71, 77
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 111, 170, 228
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 1 cut(s) 101
LpnPI CCDG 3 cut(s) 94, 100, 179
Lsp1109I GCAGC 5 cut(s) 61, 83, 89, 114, 117
MaeI CTAG 2 cut(s) 41, 259
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 175
MboII GAAGA 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 137
MnlI CCTC 1 cut(s) 35
MseI TTAA 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 2 cut(s) 81, 249
MspR9I CCNGG 1 cut(s) 249
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 4 cut(s) 77, 111, 170, 228
NciI CCSGG 1 cut(s) 249
NlaIII CATG 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 175
PkrI GCNGC 7 cut(s) 73, 76, 79, 104, 107, 172, 213
PstI CTGCAG 1 cut(s) 79
PvuII CAGCTG 1 cut(s) 74
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 7 cut(s) 72, 75, 78, 103, 106, 171, 212
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 1 cut(s) 137
SetI ASST 2 cut(s) 76, 240
SfcI CTRYAG 1 cut(s) 75
SsiI CCGC 4 cut(s) 170, 173, 191, 212
SspMI CTAG 2 cut(s) 41, 259
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 159
TaiI ACGT 1 cut(s) 240
TauI GCSGC 2 cut(s) 173, 214
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 5 cut(s) 71, 74, 77, 102, 105
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 1 cut(s) 115
XspI CTAG 2 cut(s) 41, 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.