Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001615

Physical Location & Seq

Genomic Coordinates Reverse (-)

27613030 .. 27614788

Gene Structure 1759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1174900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGCTCCGCTTCGACTACACATCTTCTGGAATTTTCGTTCCGTTTCCACTTCTTTCTCTCAAAAGCTGGGCTTTTCCATTTGCTTCCGGCAGTCTCCATCGAACTCCATTTCTCTCTCGCGATTTTCCACGAACCACAACGTATGCTACCTATCCCGTCCCGATTCGTAGAAAATTCCTCAAGCGGCCTTCATTTCATGGAACGGTGTTTTCTTATGGGCAGACCAACAGTGCGCAATGGTTCCAAAAGAGACTCGGGTATCATTCATCGAGCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

93

Amino Acids

10.68

Weight (kDa)

10.74

Isoelectric Point (pI)

54.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001615)

Species	Orthologous Gene IDs
malus_domestica	MD00G1174900.v1.1 MD01G1174900.v1.1
pyrus_communis	pycom01g02540 pycom02g08640 pycom02g21750 pycom05g02950 pycom05g07810 pycom07g08030 pycom11g21700 pycom13g23410 pycom16g13490 pycom17g16180
rosa_chinensis	RchiOBHm_Chr6g0247261 RchiOBHm_Chr7g0204481
rosa_laevigata	RLG00000007852 RLG00000013807 RLG00000018815 RLG00000023656 RLG00000036145 RLG00000036151
rosa_multiflora	Rmu_sc0000367.1_g000212
rosa_roxburghii	Rroxscaffold_1G00054610 Rroxscaffold_3G00223650 Rroxscaffold_4G00310010 Rroxscaffold_4G00326510 Rroxscaffold_5G00347060 Rroxscaffold_7G00200030
rosa_rugosa	Rorug02G0466400 Rorug04G0195600 Rorug06G0200000
rosa_samantha	Rh2DG335000 Rh4BG049400 Rh4CG056000 Rh4CG286000 Rh4DG269000 Rh6AG158900 Rh6AG260100 Rh6BG163100 Rh6BG263200 Rh6CG155300 Rh6CG155400 Rh6CG262200 Rh6CG325100 Rh6DG138200 Rh6DG148900 Rh6DG254100 Rh6DG254400 Rh6DG310900 Rh7DG185300
rosa_wichuraiana	Rw1G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	234
AccII	CGCG	1 cut(s)	120
AciI	CCGC	2 cut(s)	7, 184
AcsI	RAATTY	2 cut(s)	30, 173
AloI	GAACNNNNNNTCC	2 cut(s)	21, 53
AluBI	AGCT	2 cut(s)	66, 273
AluI	AGCT	2 cut(s)	66, 273
Alw26I	GTCTC	2 cut(s)	98, 244
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	1 cut(s)	185
ApoI	RAATTY	2 cut(s)	30, 173
AspLEI	GCGC	1 cut(s)	235
AvaI	CYCGRG	1 cut(s)	254
BaeI	ACNNNNGTAYC	2 cut(s)	242, 275
BccI	CCATC	1 cut(s)	105
BcoDI	GTCTC	2 cut(s)	98, 244
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
BmeT110I	CYCGRG	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	242
BseMI	GCAATG	1 cut(s)	242
BseYI	CCCAGC	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	143
BsmAI	GTCTC	2 cut(s)	98, 244
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	187
BsoBI	CYCGRG	1 cut(s)	254
Bsp68I	TCGCGA	1 cut(s)	120
BspACI	CCGC	2 cut(s)	7, 184
BspANI	GGCC	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	242
Bst4CI	ACNGT	2 cut(s)	205, 230
BstFNI	CGCG	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	235
BstMAI	GTCTC	2 cut(s)	98, 244
BstUI	CGCG	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	235
BtuMI	TCGCGA	1 cut(s)	120
CfoI	GCGC	1 cut(s)	235
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	4 cut(s)	66, 71, 187, 273
CviKI_1	RGCY	4 cut(s)	66, 71, 187, 273
Eco88I	CYCGRG	1 cut(s)	254
FaeI	CATG	1 cut(s)	200
FaiI	YATR	3 cut(s)	144, 198, 216
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	185
FspI	TGCGCA	1 cut(s)	234
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	185
GsaI	CCCAGC	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	87
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	1 cut(s)	200
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HinfI	GANTC	2 cut(s)	163, 252
HpaII	CCGG	1 cut(s)	87
Hpy188III	TCNNGA	3 cut(s)	27, 119, 160
HpyAV	CCTTC	1 cut(s)	198
HpyCH4III	ACNGT	2 cut(s)	205, 230
HpyCH4IV	ACGT	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	1 cut(s)	200
HspAI	GCGC	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	3 cut(s)	12, 52, 100
MaeII	ACGT	1 cut(s)	140
MboII	GAAGA	1 cut(s)	15
MluCI	AATT	2 cut(s)	30, 173
MlyI	GAGTC	1 cut(s)	246
MnlI	CCTC	1 cut(s)	188
MspI	CCGG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	120
NlaIII	CATG	1 cut(s)	200
NlaIV	GGNNCC	1 cut(s)	242
NruI	TCGCGA	1 cut(s)	120
NsbI	TGCGCA	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	186
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	242
RruI	TCGCGA	1 cut(s)	120
SatI	GCNGC	1 cut(s)	185
SchI	GAGTC	1 cut(s)	246
SetI	ASST	4 cut(s)	68, 143, 152, 275
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	2 cut(s)	30, 173
SsiI	CCGC	2 cut(s)	7, 184
TaaI	ACNGT	2 cut(s)	205, 230
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	3 cut(s)	12, 100, 269
TasI	AATT	2 cut(s)	30, 173
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	1 cut(s)	163
TscAI	CASTG	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	180, 185, 255
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	235
XapI	RAATTY	2 cut(s)	30, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.