Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001615

Physical Location & Seq

Genomic Coordinates Reverse (-)

44492672 .. 44506380

Gene Structure 13709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG254400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCTTCTAAGCGACCACCGTCAGCCTCGAAGATGCCAGATAAGGAATGGACGGCGATTGACGCATGAGGCACCGTTAGTGTCGGTGATTCGCCAGATCACAGTGCTTAGGCTTCCACCTCCACTTGACGAGATCGCGGCCGTTGAATTTGTTGCTGGAAATGCAACTCCAGCCCTTGAAGATCTCCTTGCAAGTGTTGTCGTACTTGGGAGAAGCATTAGGGTCGTAGATCCAGGCTCCATCAGAGTAGTGGCAGGACTCGACCGGCTCCGTCAGGTTAGATCCTGGGCATTTCAGAAATTCGAGGGAGCTATGAGGTTGGGAAGGAACGGAGGAGATATACATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.85

Weight (kDa)

11.37

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001615)

Species	Orthologous Gene IDs
malus_domestica	MD00G1174900.v1.1 MD01G1174900.v1.1
pyrus_communis	pycom01g02540 pycom02g08640 pycom02g21750 pycom05g02950 pycom05g07810 pycom07g08030 pycom11g21700 pycom13g23410 pycom16g13490 pycom17g16180
rosa_chinensis	RchiOBHm_Chr6g0247261 RchiOBHm_Chr7g0204481
rosa_laevigata	RLG00000007852 RLG00000013807 RLG00000018815 RLG00000023656 RLG00000036145 RLG00000036151
rosa_multiflora	Rmu_sc0000367.1_g000212
rosa_roxburghii	Rroxscaffold_1G00054610 Rroxscaffold_3G00223650 Rroxscaffold_4G00310010 Rroxscaffold_4G00326510 Rroxscaffold_5G00347060 Rroxscaffold_7G00200030
rosa_rugosa	Rorug02G0466400 Rorug04G0195600 Rorug06G0200000
rosa_samantha	Rh2DG335000 Rh4BG049400 Rh4CG056000 Rh4CG286000 Rh4DG269000 Rh6AG158900 Rh6AG260100 Rh6BG163100 Rh6BG263200 Rh6CG155300 Rh6CG155400 Rh6CG262200 Rh6CG325100 Rh6DG138200 Rh6DG148900 Rh6DG254100 Rh6DG254400 Rh6DG310900 Rh7DG185300
rosa_wichuraiana	Rw1G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	70
AccII	CGCG	1 cut(s)	137
AciI	CCGC	1 cut(s)	137
AclWI	GGATC	2 cut(s)	224, 276
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	2 cut(s)	146, 299
AfaI	GTAC	1 cut(s)	204
AgsI	TTSAA	2 cut(s)	146, 179
AjnI	CCWGG	2 cut(s)	232, 284
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
AlwI	GGATC	2 cut(s)	224, 276
AoxI	GGCC	1 cut(s)	138
ApoI	RAATTY	2 cut(s)	146, 299
AsuHPI	GGTGA	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	70
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	2 cut(s)	68, 125
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BciT130I	CCWGG	2 cut(s)	234, 286
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	2 cut(s)	234, 286
BmiI	GGNNCC	3 cut(s)	72, 238, 269
BmrFI	CCNGG	2 cut(s)	234, 286
BmsI	GCATC	1 cut(s)	23
BoxI	GACNNNNGTC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	153
Bpu10I	CCTNAGC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	285
Bse118I	RCCGGY	1 cut(s)	264
BseBI	CCWGG	2 cut(s)	234, 286
BseDI	CCNNGG	1 cut(s)	285
BseRI	GAGGAG	1 cut(s)	348
BseX3I	CGGCCG	1 cut(s)	138
Bsh1236I	CGCG	1 cut(s)	137
Bsh1285I	CGRYCG	2 cut(s)	141, 265
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	70
BsiEI	CGRYCG	2 cut(s)	141, 265
BsiSI	CCGG	1 cut(s)	265
BsnI	GGCC	1 cut(s)	140
Bsp143I	GATC	5 cut(s)	96, 132, 181, 229, 281
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	3 cut(s)	72, 238, 269
BspPI	GGATC	2 cut(s)	224, 276
BspT107I	GGYRCC	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	264
BssAI	RCCGGY	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	5 cut(s)	96, 132, 181, 229, 281
Bst2UI	CCWGG	2 cut(s)	234, 286
Bst4CI	ACNGT	3 cut(s)	20, 75, 103
BstDEI	CTNAG	2 cut(s)	8, 107
BstFNI	CGCG	1 cut(s)	137
BstKTI	GATC	5 cut(s)	99, 135, 184, 232, 284
BstMBI	GATC	5 cut(s)	96, 132, 181, 229, 281
BstMCI	CGRYCG	2 cut(s)	141, 265
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 161, 170
BstNI	CCWGG	2 cut(s)	234, 286
BstPAI	GACNNNNGTC	1 cut(s)	18
BstSCI	CCNGG	2 cut(s)	232, 284
BstUI	CGCG	1 cut(s)	137
BstX2I	RGATCY	3 cut(s)	181, 229, 281
BstYI	RGATCY	3 cut(s)	181, 229, 281
BstZI	CGGCCG	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	108
Cfr10I	RCCGGY	1 cut(s)	264
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	203
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	7 cut(s)	25, 112, 140, 173, 237, 268, 311
CviKI_1	RGCY	7 cut(s)	25, 112, 140, 173, 237, 268, 311
CviQI	GTAC	1 cut(s)	203
DdeI	CTNAG	2 cut(s)	8, 107
DpnI	GATC	5 cut(s)	98, 134, 183, 231, 283
DpnII	GATC	5 cut(s)	96, 132, 181, 229, 281
EaeI	YGGCCR	1 cut(s)	138
EagI	CGGCCG	1 cut(s)	138
EclXI	CGGCCG	1 cut(s)	138
Eco52I	CGGCCG	1 cut(s)	138
EcoRII	CCWGG	2 cut(s)	232, 284
FaeI	CATG	1 cut(s)	68
FaiI	YATR	4 cut(s)	66, 314, 341, 345
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FatI	CATG	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	138
GluI	GCNGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	265
HgaI	GACGC	1 cut(s)	70
Hin1II	CATG	1 cut(s)	68
HinfI	GANTC	2 cut(s)	88, 258
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	245, 297
HpyAV	CCTTC	1 cut(s)	318
HpyCH4III	ACNGT	3 cut(s)	20, 75, 103
HpyCH4V	TGCA	2 cut(s)	164, 191
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 161, 170
HpyF3I	CTNAG	2 cut(s)	8, 107
Hsp92II	CATG	1 cut(s)	68
Kzo9I	GATC	5 cut(s)	96, 132, 181, 229, 281
LmnI	GCTCC	3 cut(s)	242, 273, 308
LweI	GCATC	1 cut(s)	23
MalI	GATC	5 cut(s)	98, 134, 183, 231, 283
MboI	GATC	5 cut(s)	96, 132, 181, 229, 281
MboII	GAAGA	2 cut(s)	42, 191
MflI	RGATCY	3 cut(s)	181, 229, 281
MluCI	AATT	2 cut(s)	146, 299
MlyI	GAGTC	1 cut(s)	252
MnlI	CCTC	6 cut(s)	36, 61, 129, 298, 309, 326
MseI	TTAA	1 cut(s)	349
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	2 cut(s)	234, 286
MvaI	CCWGG	2 cut(s)	234, 286
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	3 cut(s)	61, 161, 170
NdeII	GATC	5 cut(s)	96, 132, 181, 229, 281
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	3 cut(s)	72, 238, 269
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	139
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
PshAI	GACNNNNGTC	1 cut(s)	18
Psp6I	CCWGG	2 cut(s)	232, 284
PspGI	CCWGG	2 cut(s)	232, 284
PspN4I	GGNNCC	3 cut(s)	72, 238, 269
PsuI	RGATCY	3 cut(s)	181, 229, 281
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	349
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	5 cut(s)	96, 132, 181, 229, 281
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	2 cut(s)	234, 286
SetI	ASST	4 cut(s)	121, 279, 313, 320
SfaNI	GCATC	1 cut(s)	23
Sse9I	AATT	2 cut(s)	146, 299
SsiI	CCGC	1 cut(s)	137
StyD4I	CCNGG	2 cut(s)	232, 284
TaaI	ACNGT	3 cut(s)	20, 75, 103
TaqI	TCGA	3 cut(s)	28, 261, 303
TasI	AATT	2 cut(s)	146, 299
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	349
Tru9I	TTAA	1 cut(s)	349
TscAI	CASTG	1 cut(s)	108
TspGWI	ACGGA	2 cut(s)	260, 345
TspRI	CASTG	1 cut(s)	108
XapI	RAATTY	2 cut(s)	146, 299
XcmI	CCANNNNNNNNNTGG	2 cut(s)	44, 247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.