Rh4CG056000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001615
Physical Location & Seq
Forward (+)
10968825 .. 10969043
219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG056000.1

Sequence Viewer

Length: 219 bp
ATGTCGGCACCGTTAGTGTCGGAGGTTCGCCAGATCACAGTGCTTAGGCTTCCACATCCACTTGACGAGTTCGCGGCCATTGGATTTGTTGCTGGAAATGCAATTCCAACCCTTGAAGATCTCCTTGCAGGTGTTGTCGTACTTGGGAGAAGCATTAGGGTCATAGATCCAGGCTCCATCGGAGTAGTCGCAGGACCCGATCGGCTCTGTCAGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.5

Weight (kDa)

5.0

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 119
Acc36I ACCTGC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 7
AccII CGCG 1 cut(s) 74
AciI CCGC 1 cut(s) 74
AclWI GGATC 1 cut(s) 161
AcoI YGGCCR 1 cut(s) 75
AfaI GTAC 1 cut(s) 141
AgsI TTSAA 1 cut(s) 116
AjnI CCWGG 1 cut(s) 169
AlwI GGATC 1 cut(s) 161
AoxI GGCC 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 194
AvaII GGWCC 1 cut(s) 194
BanI GGYRCC 1 cut(s) 7
BccI CCATC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 119
BglII AGATCT 1 cut(s) 118
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 3 cut(s) 9, 175, 196
BmrFI CCNGG 1 cut(s) 171
Bpu10I CCTNAGC 1 cut(s) 44
BseBI CCWGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 74
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 1 cut(s) 77
BshNI GGYRCC 1 cut(s) 7
BsiEI CGRYCG 1 cut(s) 202
BsnI GGCC 1 cut(s) 77
Bsp143I GATC 4 cut(s) 33, 118, 166, 199
BspACI CCGC 1 cut(s) 74
BspANI GGCC 1 cut(s) 77
BspFNI CGCG 1 cut(s) 74
BspLI GGNNCC 3 cut(s) 9, 175, 196
BspMI ACCTGC 1 cut(s) 119
BspPI GGATC 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 7
BssMI GATC 4 cut(s) 33, 118, 166, 199
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 2 cut(s) 12, 40
BstDEI CTNAG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 55
BstFNI CGCG 1 cut(s) 74
BstKTI GATC 4 cut(s) 36, 121, 169, 202
BstMBI GATC 4 cut(s) 33, 118, 166, 199
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstUI CGCG 1 cut(s) 74
BstX2I RGATCY 2 cut(s) 118, 166
BstYI RGATCY 2 cut(s) 118, 166
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 45
BveI ACCTGC 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 140
CviJI RGCY 4 cut(s) 49, 77, 174, 205
CviKI_1 RGCY 4 cut(s) 49, 77, 174, 205
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 1 cut(s) 44
DpnI GATC 4 cut(s) 35, 120, 168, 201
DpnII GATC 4 cut(s) 33, 118, 166, 199
EaeI YGGCCR 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 194
EcoO109I RGGNCCY 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 169
FaiI YATR 1 cut(s) 164
FalI AAGNNNNNCTT 2 cut(s) 108, 140
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
HaeIII GGCC 1 cut(s) 77
Hpy188I TCNGA 3 cut(s) 22, 182, 218
HpyCH4III ACNGT 2 cut(s) 12, 40
HpyCH4V TGCA 2 cut(s) 101, 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 1 cut(s) 44
Kzo9I GATC 4 cut(s) 33, 118, 166, 199
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 7 cut(s) 44, 78, 114, 156, 177, 183, 197
MalI GATC 4 cut(s) 35, 120, 168, 201
MboI GATC 4 cut(s) 33, 118, 166, 199
MboII GAAGA 1 cut(s) 128
MflI RGATCY 2 cut(s) 118, 166
MluCI AATT 1 cut(s) 102
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 1 cut(s) 16
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 98
NdeII GATC 4 cut(s) 33, 118, 166, 199
NlaIV GGNNCC 3 cut(s) 9, 175, 196
PaqCI CACCTGC 1 cut(s) 119
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PkrI GCNGC 1 cut(s) 76
Ple19I CGATCG 1 cut(s) 202
PpuMI RGGWCCY 1 cut(s) 194
Psp5II RGGWCCY 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 3 cut(s) 9, 175, 196
PspPI GGNCC 1 cut(s) 194
PspPPI RGGWCCY 1 cut(s) 194
PsuI RGATCY 2 cut(s) 118, 166
PvuI CGATCG 1 cut(s) 202
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 4 cut(s) 33, 118, 166, 199
Sau96I GGNCC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 171
SetI ASST 3 cut(s) 27, 133, 216
SinI GGWCC 1 cut(s) 194
Sse9I AATT 1 cut(s) 102
SsiI CCGC 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 2 cut(s) 12, 40
TasI AATT 1 cut(s) 102
TauI GCSGC 1 cut(s) 77
TscAI CASTG 1 cut(s) 45
TspRI CASTG 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.