RLG00000036145

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001615
Physical Location & Seq
Reverse (-)
76387607 .. 76388912
1306 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036145

Sequence Viewer

Length: 318 bp
ATGCTTTCTCTACCCGTGATTTGGCGGCTCGGGTTCAGATCGAACAACGATCTGATTGCTAGGGTGGCTAGGTTATGGACGGAGAGCAAGACAAGGCGGAGGAGCGATGATGGAGGCGCGTTCAACCTATTGACCATTAGGTCCGGCATTGACTTGATGTCGGCGCTGTTAGTGTCGGAGATTCGCCAAATCACAGTGCTTAGGCTTCCACCTCCACTTGACGAGTTCGCAGCTGTTGGATTTGTTGCTGGAAATGCAATTCCAGCCCTTGAAGATCTCCTTGCAGATGTTGTCGTACTTGGGAGGAAGTGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.59

Weight (kDa)

9.29

Isoelectric Point (pI)

59.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 139
AccII CGCG 1 cut(s) 119
AciI CCGC 2 cut(s) 25, 97
AfaI GTAC 1 cut(s) 297
AfiI CCNNNNNNNGG 1 cut(s) 21
AgsI TTSAA 2 cut(s) 124, 272
AhdI GACNNNNNGTC 1 cut(s) 157
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 230
Asp700I GAANNNNTTC 1 cut(s) 311
AspLEI GCGC 2 cut(s) 119, 166
AspS9I GGNCC 1 cut(s) 141
AvaI CYCGRG 1 cut(s) 29
AvaII GGWCC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 242
BccI CCATC 1 cut(s) 104
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BfaI CTAG 2 cut(s) 60, 69
BfoI RGCGCY 1 cut(s) 167
BglII AGATCT 1 cut(s) 274
BisI GCNGC 2 cut(s) 26, 231
BlsI GCNGC 2 cut(s) 27, 232
Bme18I GGWCC 1 cut(s) 141
BmeRI GACNNNNNGTC 1 cut(s) 157
BmeT110I CYCGRG 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 141
Bpu10I CCTNAGC 1 cut(s) 200
BsaXI ACNNNNNCTCC 1 cut(s) 295
Bsc4I CCNNNNNNNGG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 242
Bsh1236I CGCG 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 21
BsoBI CYCGRG 1 cut(s) 29
Bsp143I GATC 3 cut(s) 38, 49, 274
BspACI CCGC 2 cut(s) 25, 97
BspFNI CGCG 1 cut(s) 119
BssMI GATC 3 cut(s) 38, 49, 274
Bst4CI ACNGT 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 200
BstFNI CGCG 1 cut(s) 119
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 2 cut(s) 119, 166
BstKTI GATC 3 cut(s) 41, 52, 277
BstMBI GATC 3 cut(s) 38, 49, 274
BstMWI GCNNNNNNNGC 3 cut(s) 65, 254, 263
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BtgZI GCGATG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 201
CfoI GCGC 2 cut(s) 119, 166
Cfr13I GGNCC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 296
CviJI RGCY 5 cut(s) 28, 68, 205, 233, 266
CviKI_1 RGCY 5 cut(s) 28, 68, 205, 233, 266
CviQI GTAC 1 cut(s) 296
DdeI CTNAG 1 cut(s) 200
DpnI GATC 3 cut(s) 40, 51, 276
DpnII GATC 3 cut(s) 38, 49, 274
DrdI GACNNNNNNGTC 1 cut(s) 139
DriI GACNNNNNGTC 1 cut(s) 157
DseDI GACNNNNNNGTC 1 cut(s) 139
Eam1105I GACNNNNNGTC 1 cut(s) 157
EciI GGCGGA 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 29
FaiI YATR 1 cut(s) 76
FalI AAGNNNNNCTT 2 cut(s) 264, 296
Fnu4HI GCNGC 2 cut(s) 26, 231
Fsp4HI GCNGC 2 cut(s) 26, 231
FspBI CTAG 2 cut(s) 60, 69
GlaI GCGC 2 cut(s) 118, 165
GluI GCNGC 2 cut(s) 26, 231
HaeII RGCGCY 1 cut(s) 167
HapII CCGG 1 cut(s) 144
HhaI GCGC 2 cut(s) 119, 166
Hin6I GCGC 2 cut(s) 117, 164
HinP1I GCGC 2 cut(s) 117, 164
HinfI GANTC 1 cut(s) 181
HpaII CCGG 1 cut(s) 144
Hpy188I TCNGA 4 cut(s) 38, 54, 178, 317
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 2 cut(s) 257, 284
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 254, 263
HpyF3I CTNAG 1 cut(s) 200
HspAI GCGC 2 cut(s) 117, 164
Kzo9I GATC 3 cut(s) 38, 49, 274
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 3 cut(s) 157, 234, 276
Lsp1109I GCAGC 1 cut(s) 242
MaeI CTAG 2 cut(s) 60, 69
MalI GATC 3 cut(s) 40, 51, 276
MboI GATC 3 cut(s) 38, 49, 274
MboII GAAGA 1 cut(s) 284
MflI RGATCY 1 cut(s) 274
MluCI AATT 1 cut(s) 258
MmeI TCCRAC 2 cut(s) 156, 217
MnlI CCTC 4 cut(s) 93, 107, 222, 297
MroXI GAANNNNTTC 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 1 cut(s) 144
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 3 cut(s) 65, 254, 263
NdeII GATC 3 cut(s) 38, 49, 274
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 2 cut(s) 27, 232
PspPI GGNCC 1 cut(s) 141
PsuI RGATCY 1 cut(s) 274
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
SatI GCNGC 2 cut(s) 26, 231
Sau3AI GATC 3 cut(s) 38, 49, 274
Sau96I GGNCC 1 cut(s) 141
SetI ASST 5 cut(s) 74, 129, 143, 214, 235
SinI GGWCC 1 cut(s) 141
Sse9I AATT 1 cut(s) 258
SsiI CCGC 2 cut(s) 25, 97
SspMI CTAG 2 cut(s) 60, 69
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 41
TasI AATT 1 cut(s) 258
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 1 cut(s) 181
TscAI CASTG 1 cut(s) 201
TseI GCWGC 1 cut(s) 230
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 1 cut(s) 201
VpaK11BI GGWCC 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 311
XspI CTAG 2 cut(s) 60, 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.