Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001615

Physical Location & Seq

Genomic Coordinates Reverse (-)

7423632 .. 7423982

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g08030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCGGAGGACTCCAGCTGGGCATCGTTTTGCGAAGGGAGGAGGAGGCATTGGGGAGAGTGGTCGTCACCGCCGCCCATCCACTATGAGACGACGACGTCGTTCAAGAACTATGAAGGTTGAGAGAAAGAAAGTGAAGTCCAAGTCCATCCACCACGTGGCTGACGTCGCCCAGACATTAGCCTTGCATCACATGCCCTTCGGGCTCTCGGGCTGGCAACTCCTGCCGGGCCTCTCCCTCGGGCCCGCTCGGGCTCCATCGCCAGCACACGCTGGACCAAGTTGCTCAGGCTTTCTGGCACTGTTTGAGAGCCATTCCACCAGACTATTGCCCATGGTGGAACTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

117

Amino Acids

12.72

Weight (kDa)

12.0

Isoelectric Point (pI)

76.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001615)

Species	Orthologous Gene IDs
malus_domestica	MD00G1174900.v1.1 MD01G1174900.v1.1
pyrus_communis	pycom01g02540 pycom02g08640 pycom02g21750 pycom05g02950 pycom05g07810 pycom07g08030 pycom11g21700 pycom13g23410 pycom16g13490 pycom17g16180
rosa_chinensis	RchiOBHm_Chr6g0247261 RchiOBHm_Chr7g0204481
rosa_laevigata	RLG00000007852 RLG00000013807 RLG00000018815 RLG00000023656 RLG00000036145 RLG00000036151
rosa_multiflora	Rmu_sc0000367.1_g000212
rosa_roxburghii	Rroxscaffold_1G00054610 Rroxscaffold_3G00223650 Rroxscaffold_4G00310010 Rroxscaffold_4G00326510 Rroxscaffold_5G00347060 Rroxscaffold_7G00200030
rosa_rugosa	Rorug02G0466400 Rorug04G0195600 Rorug06G0200000
rosa_samantha	Rh2DG335000 Rh4BG049400 Rh4CG056000 Rh4CG286000 Rh4DG269000 Rh6AG158900 Rh6AG260100 Rh6BG163100 Rh6BG263200 Rh6CG155300 Rh6CG155400 Rh6CG262200 Rh6CG325100 Rh6DG138200 Rh6DG148900 Rh6DG254100 Rh6DG254400 Rh6DG310900 Rh7DG185300
rosa_wichuraiana	Rw1G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	96
AatII	GACGTC	2 cut(s)	100, 168
AccB7I	CCANNNNNTGG	1 cut(s)	157
AccBSI	CCGCTC	1 cut(s)	248
AciI	CCGC	4 cut(s)	4, 70, 73, 246
AcvI	CACGTG	1 cut(s)	157
AcyI	GRCGYC	2 cut(s)	97, 165
AdeI	CACNNNGTG	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	1 cut(s)	105
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	82
Ama87I	CYCGRG	3 cut(s)	208, 239, 249
AoxI	GGCC	2 cut(s)	229, 242
ApaI	GGGCCC	1 cut(s)	246
AspS9I	GGNCC	4 cut(s)	229, 242, 243, 275
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	59
AvaI	CYCGRG	3 cut(s)	208, 239, 249
AvaII	GGWCC	1 cut(s)	275
BaeGI	GKGCMC	1 cut(s)	246
BanII	GRGCYC	3 cut(s)	207, 246, 256
BbrPI	CACGTG	1 cut(s)	157
BccI	CCATC	3 cut(s)	85, 155, 265
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	82
BglI	GCCNNNNNGGC	1 cut(s)	202
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	275
BmeT110I	CYCGRG	3 cut(s)	208, 239, 249
BmgT120I	GGNCC	4 cut(s)	229, 242, 243, 275
BmiI	GGNNCC	2 cut(s)	244, 255
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	2 cut(s)	31, 196
Bpu10I	CCTNAGC	1 cut(s)	286
BpuMI	CCSGG	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	157
BsaHI	GRCGYC	2 cut(s)	97, 165
BsaJI	CCNNGG	2 cut(s)	238, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
BseDI	CCNNGG	2 cut(s)	238, 333
BseGI	GGATG	2 cut(s)	77, 147
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMII	CTCAG	1 cut(s)	300
BseRI	GAGGAG	2 cut(s)	54, 57
BseSI	GKGCMC	1 cut(s)	246
BseYI	CCCAGC	1 cut(s)	17
BshFI	GGCC	2 cut(s)	231, 244
BsiHKCI	CYCGRG	3 cut(s)	208, 239, 249
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
BsnI	GGCC	2 cut(s)	231, 244
BsoBI	CYCGRG	3 cut(s)	208, 239, 249
Bsp120I	GGGCCC	1 cut(s)	242
Bsp1286I	GDGCHC	3 cut(s)	207, 246, 256
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	4 cut(s)	4, 70, 73, 246
BspANI	GGCC	2 cut(s)	231, 244
BspCNI	CTCAG	1 cut(s)	299
BspLI	GGNNCC	2 cut(s)	244, 255
BsrBI	CCGCTC	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	238, 333
BssNI	GRCGYC	2 cut(s)	97, 165
BssT1I	CCWWGG	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	303
BstACI	GRCGYC	2 cut(s)	97, 165
BstAPI	GCANNNNNTGC	2 cut(s)	193, 223
BstBAI	YACGTR	1 cut(s)	157
BstC8I	GCNNGC	3 cut(s)	215, 246, 264
BstDEI	CTNAG	1 cut(s)	286
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	77, 147
BstMAI	GTCTC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 193, 202, 223
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	226
BstSLI	GKGCMC	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	231, 244
BtgI	CCRYGG	1 cut(s)	333
BtgZI	GCGATG	1 cut(s)	243
BtsCI	GGATG	2 cut(s)	77, 147
BtsIMutI	CAGTG	1 cut(s)	299
Cac8I	GCNNGC	3 cut(s)	215, 246, 264
Cfr13I	GGNCC	4 cut(s)	229, 242, 243, 275
CviAII	CATG	2 cut(s)	193, 334
DdeI	CTNAG	1 cut(s)	286
DraIII	CACNNNGTG	1 cut(s)	157
DrdI	GACNNNNNNGTC	1 cut(s)	96
DseDI	GACNNNNNNGTC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	333
Eco24I	GRGCYC	3 cut(s)	207, 246, 256
Eco47I	GGWCC	1 cut(s)	275
Eco72I	CACGTG	1 cut(s)	157
Eco88I	CYCGRG	3 cut(s)	208, 239, 249
EcoT14I	CCWWGG	1 cut(s)	333
EcoT38I	GRGCYC	3 cut(s)	207, 246, 256
ErhI	CCWWGG	1 cut(s)	333
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	2 cut(s)	196, 337
FaiI	YATR	4 cut(s)	86, 113, 194, 335
FatI	CATG	2 cut(s)	192, 333
FauI	CCCGC	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	2 cut(s)	64, 134
FriOI	GRGCYC	3 cut(s)	207, 246, 256
Fsp4HI	GCNGC	1 cut(s)	73
GluI	GCNGC	1 cut(s)	73
GsaI	CCCAGC	1 cut(s)	21
HaeIII	GGCC	2 cut(s)	231, 244
HapII	CCGG	1 cut(s)	227
Hin1I	GRCGYC	2 cut(s)	97, 165
Hin1II	CATG	2 cut(s)	196, 337
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	59
Hpy188III	TCNNGA	1 cut(s)	105
Hpy99I	CGWCG	4 cut(s)	96, 99, 102, 170
HpyAV	CCTTC	3 cut(s)	28, 109, 208
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4IV	ACGT	3 cut(s)	97, 156, 165
HpyCH4V	TGCA	1 cut(s)	187
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 193, 202, 223
HpyF3I	CTNAG	1 cut(s)	286
HpySE526I	ACGT	3 cut(s)	97, 156, 165
Hsp92I	GRCGYC	2 cut(s)	97, 165
Hsp92II	CATG	2 cut(s)	196, 337
LmnI	GCTCC	1 cut(s)	259
LweI	GCATC	2 cut(s)	31, 196
MaeII	ACGT	3 cut(s)	97, 156, 165
MaeIII	GTNAC	1 cut(s)	65
MbiI	CCGCTC	1 cut(s)	248
MhlI	GDGCHC	3 cut(s)	207, 246, 256
MlyI	GAGTC	1 cut(s)	4
MnlI	CCTC	5 cut(s)	32, 35, 38, 242, 248
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	4 cut(s)	167, 193, 202, 223
NciI	CCSGG	1 cut(s)	228
NcoI	CCATGG	1 cut(s)	333
NlaIII	CATG	2 cut(s)	196, 337
NlaIV	GGNNCC	2 cut(s)	244, 255
NmuCI	GTSAC	1 cut(s)	65
NspI	RCATGY	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	2 cut(s)	97, 162
PflFI	GACNNNGTC	1 cut(s)	96
PflMI	CCANNNNNTGG	1 cut(s)	157
PkrI	GCNGC	1 cut(s)	74
PleI	GAGTC	1 cut(s)	4
PmaCI	CACGTG	1 cut(s)	157
PmlI	CACGTG	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	4
Ppu21I	YACGTR	1 cut(s)	157
PspCI	CACGTG	1 cut(s)	157
PspFI	CCCAGC	1 cut(s)	17
PspN4I	GGNNCC	2 cut(s)	244, 255
PspOMI	GGGCCC	1 cut(s)	242
PspPI	GGNCC	4 cut(s)	229, 242, 243, 275
PsyI	GACNNNGTC	1 cut(s)	96
PvuII	CAGCTG	1 cut(s)	17
SatI	GCNGC	1 cut(s)	73
Sau96I	GGNCC	4 cut(s)	229, 242, 243, 275
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	3 cut(s)	207, 246, 256
SetI	ASST	5 cut(s)	19, 100, 120, 159, 168
SfaNI	GCATC	2 cut(s)	31, 196
SinI	GGWCC	1 cut(s)	275
SsiI	CCGC	4 cut(s)	4, 70, 73, 246
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	1 cut(s)	303
TaiI	ACGT	3 cut(s)	100, 159, 168
TauI	GCSGC	1 cut(s)	75
TscAI	CASTG	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	306
Tth111I	GACNNNGTC	1 cut(s)	96
Van91I	CCANNNNNTGG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	275
XceI	RCATGY	1 cut(s)	196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
ZraI	GACGTC	2 cut(s)	98, 166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.