Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001615

Physical Location & Seq

Genomic Coordinates Reverse (-)

31891196 .. 31896768

Gene Structure 5573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00310010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGACAAGAAAAAGACAAAGAAACGAGGAAAGGAAAAGGAAAGAAGGTGAAGAACATCGGGATTTGGATGATCCCTCTAATACCGATGAGGAACTACTTTCAGTGATCCCAAATGCGCAGTACTATAAAAGAGACACTTATGACTTGAAAAATAATCATGGAAATCCAACCAGTCATGAGCTTGAGCTTGTATTAAACAACTTTACAACACGCCTTGGTCATCGTATTGGGAGGTACATTTTTGAAACCAAAGAGACTAAAGAGGCTGAAGTAAAGGGCAAAAAGACCAAGGATTCCAAAGCCGACGCTATTGCGAAGCAAAACCATTTGCACGCCTACGGGTTGATCTTAACGGTCTTTCTTGTCTTAAACACTCGGGAATGTGGTCCTCGTTTTACCCTTAAATTGATCAGTCTACAGCACGAGACATTTGATCCTAGAGGCGGGGAGTTTGAGTGGGTTCACAAGCTGCTACAACATTTAAATATGCTTTTGATTACAAACCATCCGGCATCAACTGGTACCCTTCACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

178

Amino Acids

20.75

Weight (kDa)

8.6

Isoelectric Point (pI)

26.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001615)

Species	Orthologous Gene IDs
malus_domestica	MD00G1174900.v1.1 MD01G1174900.v1.1
pyrus_communis	pycom01g02540 pycom02g08640 pycom02g21750 pycom05g02950 pycom05g07810 pycom07g08030 pycom11g21700 pycom13g23410 pycom16g13490 pycom17g16180
rosa_chinensis	RchiOBHm_Chr6g0247261 RchiOBHm_Chr7g0204481
rosa_laevigata	RLG00000007852 RLG00000013807 RLG00000018815 RLG00000023656 RLG00000036145 RLG00000036151
rosa_multiflora	Rmu_sc0000367.1_g000212
rosa_roxburghii	Rroxscaffold_1G00054610 Rroxscaffold_3G00223650 Rroxscaffold_4G00310010 Rroxscaffold_4G00326510 Rroxscaffold_5G00347060 Rroxscaffold_7G00200030
rosa_rugosa	Rorug02G0466400 Rorug04G0195600 Rorug06G0200000
rosa_samantha	Rh2DG335000 Rh4BG049400 Rh4CG056000 Rh4CG286000 Rh4DG269000 Rh6AG158900 Rh6AG260100 Rh6BG163100 Rh6BG263200 Rh6CG155300 Rh6CG155400 Rh6CG262200 Rh6CG325100 Rh6DG138200 Rh6DG148900 Rh6DG254100 Rh6DG254400 Rh6DG310900 Rh7DG185300
rosa_wichuraiana	Rw1G006920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	117
Acc65I	GGTACC	1 cut(s)	521
AccB1I	GGYRCC	1 cut(s)	521
AccI	GTMKAC	1 cut(s)	415
AciI	CCGC	1 cut(s)	444
AclWI	GGATC	3 cut(s)	65, 100, 428
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	3 cut(s)	122, 236, 523
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	2 cut(s)	148, 245
AluBI	AGCT	3 cut(s)	181, 187, 469
AluI	AGCT	3 cut(s)	181, 187, 469
Alw26I	GTCTC	3 cut(s)	126, 248, 419
AlwI	GGATC	3 cut(s)	65, 100, 428
Ama87I	CYCGRG	1 cut(s)	375
ApeKI	GCWGC	1 cut(s)	469
Asp718I	GGTACC	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	59
AvaI	CYCGRG	1 cut(s)	375
AvaII	GGWCC	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	521
BauI	CACGAG	1 cut(s)	422
BbvI	GCAGC	1 cut(s)	456
BccI	CCATC	1 cut(s)	513
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BclI	TGATCA	1 cut(s)	408
BcoDI	GTCTC	3 cut(s)	126, 248, 419
BfaI	CTAG	2 cut(s)	438, 535
BfmI	CTRYAG	1 cut(s)	416
BisI	GCNGC	1 cut(s)	470
BlsI	GCNGC	1 cut(s)	471
BmcAI	AGTACT	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	386
BmeT110I	CYCGRG	1 cut(s)	375
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	523
BmsI	GCATC	1 cut(s)	521
BpuEI	CTTGAG	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	214, 288
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	2 cut(s)	171, 523
BseDI	CCNNGG	2 cut(s)	214, 288
BseGI	GGATG	2 cut(s)	73, 505
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseNI	ACTGG	2 cut(s)	171, 523
BseXI	GCAGC	1 cut(s)	456
BshNI	GGYRCC	1 cut(s)	521
BsiHKCI	CYCGRG	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	509
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	3 cut(s)	126, 248, 419
BsoBI	CYCGRG	1 cut(s)	375
Bsp143I	GATC	5 cut(s)	70, 105, 345, 408, 433
BspACI	CCGC	1 cut(s)	444
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	523
BspPI	GGATC	3 cut(s)	65, 100, 428
BspT107I	GGYRCC	1 cut(s)	521
BsrI	ACTGG	2 cut(s)	171, 523
BssECI	CCNNGG	2 cut(s)	214, 288
BssMI	GATC	5 cut(s)	70, 105, 345, 408, 433
BssSI	CACGAG	1 cut(s)	422
BssT1I	CCWWGG	2 cut(s)	214, 288
Bst2BI	CACGAG	1 cut(s)	422
Bst4CI	ACNGT	1 cut(s)	355
BstC8I	GCNNGC	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	73, 505
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	5 cut(s)	73, 108, 348, 411, 436
BstMAI	GTCTC	3 cut(s)	126, 248, 419
BstMBI	GATC	5 cut(s)	70, 105, 345, 408, 433
BstSFI	CTRYAG	1 cut(s)	416
BstV1I	GCAGC	1 cut(s)	456
BtsCI	GGATG	2 cut(s)	73, 505
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	333
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	386
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	3 cut(s)	121, 235, 522
CviAII	CATG	2 cut(s)	158, 176
CviJI	RGCY	5 cut(s)	181, 187, 266, 302, 469
CviKI_1	RGCY	5 cut(s)	181, 187, 266, 302, 469
CviQI	GTAC	3 cut(s)	121, 235, 522
DpnI	GATC	5 cut(s)	72, 107, 347, 410, 435
DpnII	GATC	5 cut(s)	70, 105, 345, 408, 433
DraI	TTTAAA	1 cut(s)	483
Eco130I	CCWWGG	2 cut(s)	214, 288
Eco47I	GGWCC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	375
EcoT14I	CCWWGG	2 cut(s)	214, 288
ErhI	CCWWGG	2 cut(s)	214, 288
FaeI	CATG	2 cut(s)	161, 179
FaiI	YATR	5 cut(s)	126, 141, 159, 177, 488
FalI	AAGNNNNNCTT	2 cut(s)	121, 153
FatI	CATG	2 cut(s)	157, 175
FauI	CCCGC	1 cut(s)	437
FbaI	TGATCA	1 cut(s)	408
FblI	GTMKAC	1 cut(s)	415
Fnu4HI	GCNGC	1 cut(s)	470
FokI	GGATG	2 cut(s)	80, 492
Fsp4HI	GCNGC	1 cut(s)	470
FspBI	CTAG	2 cut(s)	438, 535
FspI	TGCGCA	1 cut(s)	117
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	470
HapII	CCGG	1 cut(s)	509
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	161, 179
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HinfI	GANTC	1 cut(s)	293
HpaII	CCGG	1 cut(s)	509
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	2 cut(s)	416, 463
Hpy188III	TCNNGA	3 cut(s)	59, 176, 377
Hpy8I	GTNNAC	2 cut(s)	416, 463
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	2 cut(s)	38, 536
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4V	TGCA	1 cut(s)	331
Hsp92II	CATG	2 cut(s)	161, 179
HspAI	GCGC	1 cut(s)	116
KpnI	GGTACC	1 cut(s)	525
Ksp22I	TGATCA	1 cut(s)	408
Kzo9I	GATC	5 cut(s)	70, 105, 345, 408, 433
LpnPI	CCDG	3 cut(s)	184, 504, 522
Lsp1109I	GCAGC	1 cut(s)	456
LweI	GCATC	1 cut(s)	521
MaeI	CTAG	2 cut(s)	438, 535
MalI	GATC	5 cut(s)	72, 107, 347, 410, 435
MboI	GATC	5 cut(s)	70, 105, 345, 408, 433
MboII	GAAGA	1 cut(s)	62
MluCI	AATT	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	191
MnlI	CCTC	7 cut(s)	19, 82, 85, 225, 256, 399, 434
MseI	TTAA	5 cut(s)	194, 350, 368, 402, 482
MspI	CCGG	1 cut(s)	509
NdeII	GATC	5 cut(s)	70, 105, 345, 408, 433
NlaIII	CATG	2 cut(s)	161, 179
NlaIV	GGNNCC	1 cut(s)	523
NsbI	TGCGCA	1 cut(s)	117
PagI	TCATGA	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	1 cut(s)	471
PspN4I	GGNNCC	1 cut(s)	523
PspPI	GGNCC	1 cut(s)	386
RsaI	GTAC	3 cut(s)	122, 236, 523
RsaNI	GTAC	3 cut(s)	121, 235, 522
SaqAI	TTAA	5 cut(s)	194, 350, 368, 402, 482
SatI	GCNGC	1 cut(s)	470
Sau3AI	GATC	5 cut(s)	70, 105, 345, 408, 433
Sau96I	GGNCC	1 cut(s)	386
ScaI	AGTACT	1 cut(s)	122
SetI	ASST	5 cut(s)	49, 183, 189, 236, 471
SfaNI	GCATC	1 cut(s)	521
SfcI	CTRYAG	1 cut(s)	416
SinI	GGWCC	1 cut(s)	386
SmiI	ATTTAAAT	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	404
SsiI	CCGC	1 cut(s)	444
SspMI	CTAG	2 cut(s)	438, 535
StyI	CCWWGG	2 cut(s)	214, 288
SwaI	ATTTAAAT	1 cut(s)	483
TaaI	ACNGT	1 cut(s)	355
TasI	AATT	1 cut(s)	404
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	5 cut(s)	194, 350, 368, 402, 482
Tru9I	TTAA	5 cut(s)	194, 350, 368, 402, 482
TscAI	CASTG	1 cut(s)	108
TseI	GCWGC	1 cut(s)	469
TspRI	CASTG	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	415
XspI	CTAG	2 cut(s)	438, 535
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.