Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000882

Physical Location & Seq

Genomic Coordinates Reverse (-)

39712858 .. 39713370

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1262000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCATGTTCGCGAAGGAAATATATTGGCCTTTCAAGGAGATGCCTTGACAACAGAAGCAGCCCGGAAAATTGCATTCGAACTTTTGGTGGTTGTTAGCAGTAGTGAACAGAGTACCGGACAAGTTTTCTTGGATGATGGAGAGGAAGCGGAAATGGGAGGAGACGGAGGCAACTGGACTTCAGTAGGATTTTCTTCTACTACACAAAATGGAAGTGTACATCTAAGCTCTAAGGTCGAAAACCAAGGATTCGCTTTAAACCAAAAGTTGATCATTGATAATGTTACCTTCATCGGGTTGCAAAACGCTGGTGGGGTGGAAGGGTATACTTTCAACATTACAAGGGGAGCAAACTCGACCGGAGATATCAAGGCCAGCCTTGACAGTAGCCAGCTGTTTGTTACGGTACAGATTTCCGGAGTAGCAATTCCTATAGGAACAGAGTTTGAGTTGGAGCTTAAGCATGGAAATGCTCTGAACAGCTCTGGAAACAAAGCTTTCATAGGCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

171

Amino Acids

17.83

Weight (kDa)

4.55

Isoelectric Point (pI)

29.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11720
fragaria_vesca	FvH4_3g11610 FvH4_3g11610 FvH4_3g11611
malus_domestica	MD05G1262000.v1.1 MD05G1262100.v1.1 MD05G1262200.v1.1 MD05G1262300.v1.1
prunus_persica	Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103600_v2.0.a1
pyrus_communis	pycom05g24590 pycom10g20100
rosa_chinensis	RchiOBHm_Chr5g0018571 RchiOBHm_Chr5g0018581 RchiOBHm_Chr5g0018611 RchiOBHm_Chr5g0018631 RchiOBHm_Chr5g0020511
rosa_laevigata	RLG00000032381 RLG00000032382 RLG00000032383 RLG00000032384 RLG00000032535
rosa_multiflora	Rmu_co8186534.1_g000001 Rmu_co8378957.1_g000001 Rmu_sc0002579.1_g000013 Rmu_sc0007192.1_g000006 Rmu_sc0008501.1_g000002 Rmu_sc0008501.1_g000005 Rmu_sc0009745.1_g000015 Rmu_sc0018336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057780 Rroxscaffold_1G00059120 Rroxscaffold_1G00059160 Rroxscaffold_1G00059170 Rroxscaffold_1G00059180 Rroxscaffold_7G00184290
rosa_rugosa	Rorug05G0045300 Rorug05G0045400 Rorug05G0045500 Rorug05G0060200
rosa_samantha	Rh5AG136400 Rh5AG136500 Rh5AG136600 Rh5AG136700 Rh5BG135300 Rh5BG135400 Rh5BG135500 Rh5BG150100 Rh5CG147100 Rh5CG147200 Rh5CG147300 Rh5CG147400 Rh5CG161600 Rh5DG136300 Rh5DG136400 Rh5DG136600 Rh5DG136700 Rh5DG149500
rosa_wichuraiana	Rw5G012080 Rw5G012090 Rw5G012100 Rw5G012110 Rw5G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	326
AccII	CGCG	1 cut(s)	12
AccIII	TCCGGA	1 cut(s)	416
AciI	CCGC	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	165
AfaI	GTAC	3 cut(s)	115, 219, 408
AfiI	CCNNNNNNNGG	1 cut(s)	294
AflII	CTTAAG	1 cut(s)	458
AgsI	TTSAA	2 cut(s)	35, 334
AluBI	AGCT	5 cut(s)	228, 394, 457, 483, 497
AluI	AGCT	5 cut(s)	228, 394, 457, 483, 497
Alw26I	GTCTC	1 cut(s)	156
Aor13HI	TCCGGA	1 cut(s)	416
AoxI	GGCC	3 cut(s)	27, 372, 505
ApeKI	GCWGC	1 cut(s)	59
AsuC2I	CCSGG	1 cut(s)	64
AsuII	TTCGAA	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	1 cut(s)	131
BclI	TGATCA	1 cut(s)	270
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	432
BfrI	CTTAAG	1 cut(s)	458
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	31
Bpu14I	TTCGAA	1 cut(s)	78
BpuMI	CCSGG	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	244
BsaWI	WCCGGW	3 cut(s)	116, 359, 416
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	179
BseAI	TCCGGA	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	1 cut(s)	360
BshFI	GGCC	3 cut(s)	29, 374, 507
BsiEI	CGRYCG	1 cut(s)	360
BsiSI	CCGG	4 cut(s)	64, 117, 360, 417
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	156
BsmBI	CGTCTC	1 cut(s)	156
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	3 cut(s)	29, 374, 507
Bsp119I	TTCGAA	1 cut(s)	78
Bsp13I	TCCGGA	1 cut(s)	416
Bsp1407I	TGTACA	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	270
Bsp68I	TCGCGA	1 cut(s)	12
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	3 cut(s)	29, 374, 507
BspEI	TCCGGA	1 cut(s)	416
BspFNI	CGCG	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	78
BspTI	CTTAAG	1 cut(s)	458
BsrGI	TGTACA	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	1 cut(s)	270
BssNAI	GTATAC	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	244
Bst1107I	GTATAC	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	386, 406
BstAFI	CTTAAG	1 cut(s)	458
BstAUI	TGTACA	1 cut(s)	217
BstBI	TTCGAA	1 cut(s)	78
BstC8I	GCNNGC	2 cut(s)	376, 392
BstDEI	CTNAG	2 cut(s)	224, 231
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	1 cut(s)	273
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	270
BstMCI	CGRYCG	1 cut(s)	360
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	71
BstZ17I	GTATAC	1 cut(s)	327
BsuRI	GGCC	3 cut(s)	29, 374, 507
BtsCI	GGATG	1 cut(s)	139
BtuMI	TCGCGA	1 cut(s)	12
Cac8I	GCNNGC	2 cut(s)	376, 392
Csp6I	GTAC	3 cut(s)	114, 218, 407
CviAII	CATG	2 cut(s)	5, 464
CviQI	GTAC	3 cut(s)	114, 218, 407
DdeI	CTNAG	2 cut(s)	224, 231
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
DraI	TTTAAA	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	244
Eco147I	AGGCCT	1 cut(s)	507
Eco32I	GATATC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	165
EcoRV	GATATC	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	244
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	244
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	2 cut(s)	8, 467
FaiI	YATR	6 cut(s)	6, 23, 327, 434, 465, 503
FatI	CATG	2 cut(s)	4, 463
FbaI	TGATCA	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	326
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	60
GluI	GCNGC	1 cut(s)	60
HaeIII	GGCC	3 cut(s)	29, 374, 507
HapII	CCGG	4 cut(s)	64, 117, 360, 417
Hin1II	CATG	2 cut(s)	8, 467
HindIII	AAGCTT	1 cut(s)	495
HinfI	GANTC	1 cut(s)	249
HpaII	CCGG	4 cut(s)	64, 117, 360, 417
Hpy166II	GTNNAC	3 cut(s)	107, 218, 327
Hpy188I	TCNGA	1 cut(s)	477
Hpy188III	TCNNGA	3 cut(s)	11, 417, 486
Hpy8I	GTNNAC	3 cut(s)	107, 218, 327
HpyAV	CCTTC	3 cut(s)	8, 298, 314
HpyCH4III	ACNGT	2 cut(s)	386, 406
HpyCH4V	TGCA	3 cut(s)	4, 74, 301
HpyF3I	CTNAG	2 cut(s)	224, 231
Hsp92II	CATG	2 cut(s)	8, 467
Kpn2I	TCCGGA	1 cut(s)	416
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	2 cut(s)	347, 454
LpnPI	CCDG	9 cut(s)	77, 130, 160, 294, 373, 388, 404, 430, 471
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	1 cut(s)	31
MaeIII	GTNAC	2 cut(s)	283, 400
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	1 cut(s)	186
MluCI	AATT	2 cut(s)	69, 426
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	3 cut(s)	136, 152, 161
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	416
MseI	TTAA	2 cut(s)	257, 459
MslI	CAYNNNNRTG	1 cut(s)	468
MspA1I	CMGCKG	1 cut(s)	394
MspCI	CTTAAG	1 cut(s)	458
MspI	CCGG	4 cut(s)	64, 117, 360, 417
MspR9I	CCNGG	1 cut(s)	64
Mva1269I	GAATGC	1 cut(s)	74
MvnI	CGCG	1 cut(s)	12
NciI	CCSGG	1 cut(s)	64
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	2 cut(s)	8, 467
NruI	TCGCGA	1 cut(s)	12
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
NspV	TTCGAA	1 cut(s)	78
PceI	AGGCCT	1 cut(s)	507
PctI	GAATGC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	249
PkrI	GCNGC	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	394
RruI	TCGCGA	1 cut(s)	12
RsaI	GTAC	3 cut(s)	115, 219, 408
RsaNI	GTAC	3 cut(s)	114, 218, 407
RseI	CAYNNNNRTG	1 cut(s)	468
SaqAI	TTAA	2 cut(s)	257, 459
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	1 cut(s)	270
ScrFI	CCNGG	1 cut(s)	64
SetI	ASST	7 cut(s)	230, 237, 290, 396, 459, 485, 499
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	1 cut(s)	432
SfuI	TTCGAA	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	468
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	2 cut(s)	69, 426
SseBI	AGGCCT	1 cut(s)	507
SsiI	CCGC	1 cut(s)	149
StuI	AGGCCT	1 cut(s)	507
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	2 cut(s)	386, 406
TaqI	TCGA	3 cut(s)	78, 237, 356
TasI	AATT	2 cut(s)	69, 426
TatI	WGTACW	1 cut(s)	217
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	2 cut(s)	257, 459
Tru9I	TTAA	2 cut(s)	257, 459
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	280, 490
TspGWI	ACGGA	1 cut(s)	180
Vha464I	CTTAAG	1 cut(s)	458
XceI	RCATGY	1 cut(s)	8
XmiI	GTMKAC	1 cut(s)	326
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.