Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000882

Physical Location & Seq

Genomic Coordinates Forward (+)

23505773 .. 23506861

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00184290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAATATCTATTTCCTCATCAATTCAGTTGAGGCATATTTTCCTGCAGGAAATTGGTTCGATCTCTTCAACTACACATCAGTTAGTGTAGACTCTGGAAAGAATGTTACGTTGGATGCACCGCCTGATCATATCAATGTGCATGTCCACGAAGGAAACATTTTGGCCTTGCAAGGAGAGGCCTTGACAACACAAGCGGCCCGAAACACTACATTCGAACTTTTGGTGGTCACTGGTAGTAGCAATGCGAGTACCGGAGAATTGTTCTTGGATGATGGACAGGAAGTCGAAATGGGAGGAGAGGGAGGGAAGTGGAGTTTTGTGAGGTTTCGTTCTGCACGAGCACAAAATGGAAGTCTAGTTTTGAGCTCAAAGGTCGAAAATGGAGAATTTGCATTAAGCCAAGGTTGGATCATTGATCAAATTACCGTCCTTGGGTTGGACAAAGTTAATGCAACACAGTCCAGTGTATCCCTTCCTATAGGAAAGGAGTTTGAGTTAGAGCTGAAGACGAATCAGACACTGGCGAAAACACTCTTTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

181

Amino Acids

19.66

Weight (kDa)

4.61

Isoelectric Point (pI)

26.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_31_3rd	PF21365	9 - 55	7.7e-07	Glycosyl hydrolase family 31 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11720
fragaria_vesca	FvH4_3g11610 FvH4_3g11610 FvH4_3g11611
malus_domestica	MD05G1262000.v1.1 MD05G1262100.v1.1 MD05G1262200.v1.1 MD05G1262300.v1.1
prunus_persica	Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103600_v2.0.a1
pyrus_communis	pycom05g24590 pycom10g20100
rosa_chinensis	RchiOBHm_Chr5g0018571 RchiOBHm_Chr5g0018581 RchiOBHm_Chr5g0018611 RchiOBHm_Chr5g0018631 RchiOBHm_Chr5g0020511
rosa_laevigata	RLG00000032381 RLG00000032382 RLG00000032383 RLG00000032384 RLG00000032535
rosa_multiflora	Rmu_co8186534.1_g000001 Rmu_co8378957.1_g000001 Rmu_sc0002579.1_g000013 Rmu_sc0007192.1_g000006 Rmu_sc0008501.1_g000002 Rmu_sc0008501.1_g000005 Rmu_sc0009745.1_g000015 Rmu_sc0018336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057780 Rroxscaffold_1G00059120 Rroxscaffold_1G00059160 Rroxscaffold_1G00059170 Rroxscaffold_1G00059180 Rroxscaffold_7G00184290
rosa_rugosa	Rorug05G0045300 Rorug05G0045400 Rorug05G0045500 Rorug05G0060200
rosa_samantha	Rh5AG136400 Rh5AG136500 Rh5AG136600 Rh5AG136700 Rh5BG135300 Rh5BG135400 Rh5BG135500 Rh5BG150100 Rh5CG147100 Rh5CG147200 Rh5CG147300 Rh5CG147400 Rh5CG161600 Rh5DG136300 Rh5DG136400 Rh5DG136600 Rh5DG136700 Rh5DG149500
rosa_wichuraiana	Rw5G012080 Rw5G012090 Rw5G012100 Rw5G012110 Rw5G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	2 cut(s)	122, 197
AclWI	GGATC	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	389
AcuI	CTGAAG	1 cut(s)	527
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	2 cut(s)	435, 439
AgsI	TTSAA	1 cut(s)	70
AhdI	GACNNNNNGTC	1 cut(s)	284
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	3 cut(s)	369, 505, 543
AluI	AGCT	3 cut(s)	369, 505, 543
Alw21I	GWGCWC	2 cut(s)	346, 371
AlwI	GGATC	1 cut(s)	419
AlwNI	CAGNNNCTG	1 cut(s)	523
AoxI	GGCC	3 cut(s)	165, 180, 198
ApoI	RAATTY	1 cut(s)	389
ArsI	GACNNNNNNTTYG	2 cut(s)	340, 372
AspS9I	GGNCC	1 cut(s)	199
AsuII	TTCGAA	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	371
BauI	CACGAG	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	515
Bbv12I	GWGCWC	2 cut(s)	346, 371
BccI	CCATC	1 cut(s)	269
BciVI	GTATCC	1 cut(s)	481
BclI	TGATCA	2 cut(s)	127, 418
BfaI	CTAG	2 cut(s)	359, 544
BfmI	CTRYAG	2 cut(s)	45, 480
BfuI	GTATCC	1 cut(s)	481
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
BmeRI	GACNNNNNGTC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	199
BmsI	GCATC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	515
Bpu14I	TTCGAA	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	403, 433
BsaWI	WCCGGW	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	482, 512
Bsc4I	CCNNNNNNNGG	2 cut(s)	435, 439
Bse1I	ACTGG	3 cut(s)	238, 465, 528
Bse3DI	GCAATG	1 cut(s)	250
BseDI	CCNNGG	2 cut(s)	403, 433
BseGI	GGATG	2 cut(s)	121, 277
BseLI	CCNNNNNNNGG	2 cut(s)	435, 439
BseMI	GCAATG	1 cut(s)	250
BseNI	ACTGG	3 cut(s)	238, 465, 528
BseRI	GAGGAG	1 cut(s)	312
BsgI	GTGCAG	1 cut(s)	321
BshFI	GGCC	3 cut(s)	167, 182, 200
BsiHKAI	GWGCWC	2 cut(s)	346, 371
BsiSI	CCGG	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	435, 439
BsnI	GGCC	3 cut(s)	167, 182, 200
Bsp119I	TTCGAA	1 cut(s)	216
Bsp1286I	GDGCHC	2 cut(s)	346, 371
Bsp143I	GATC	4 cut(s)	61, 127, 411, 418
BspACI	CCGC	2 cut(s)	122, 197
BspANI	GGCC	3 cut(s)	167, 182, 200
BspMAI	CTGCAG	1 cut(s)	49
BspPI	GGATC	1 cut(s)	419
BspT104I	TTCGAA	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	250
BsrI	ACTGG	3 cut(s)	238, 465, 528
BssECI	CCNNGG	2 cut(s)	403, 433
BssMI	GATC	4 cut(s)	61, 127, 411, 418
BssSI	CACGAG	1 cut(s)	339
BssT1I	CCWWGG	2 cut(s)	403, 433
Bst2BI	CACGAG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	430, 462
Bst6I	CTCTTC	1 cut(s)	71
BstBI	TTCGAA	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	121, 277
BstKTI	GATC	4 cut(s)	64, 130, 414, 421
BstMBI	GATC	4 cut(s)	61, 127, 411, 418
BstNSI	RCATGY	1 cut(s)	146
BstSFI	CTRYAG	2 cut(s)	45, 480
BstV2I	GAAGAC	1 cut(s)	515
BsuI	GTATCC	1 cut(s)	481
BsuRI	GGCC	3 cut(s)	167, 182, 200
BtsCI	GGATG	2 cut(s)	121, 277
BtsIMutI	CAGTG	3 cut(s)	231, 472, 521
CaiI	CAGNNNCTG	1 cut(s)	523
Cfr13I	GGNCC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	7 cut(s)	167, 182, 200, 369, 402, 505, 543
CviKI_1	RGCY	7 cut(s)	167, 182, 200, 369, 402, 505, 543
CviQI	GTAC	1 cut(s)	252
DpnI	GATC	4 cut(s)	63, 129, 413, 420
DpnII	GATC	4 cut(s)	61, 127, 411, 418
DriI	GACNNNNNGTC	1 cut(s)	284
Eam1104I	CTCTTC	1 cut(s)	71
Eam1105I	GACNNNNNGTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	71
Ecl136II	GAGCTC	1 cut(s)	369
Eco130I	CCWWGG	2 cut(s)	403, 433
Eco147I	AGGCCT	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	371
Eco53kI	GAGCTC	1 cut(s)	369
Eco57I	CTGAAG	1 cut(s)	527
EcoICRI	GAGCTC	1 cut(s)	369
EcoT14I	CCWWGG	2 cut(s)	403, 433
EcoT38I	GRGCYC	1 cut(s)	371
ErhI	CCWWGG	2 cut(s)	403, 433
FaeI	CATG	1 cut(s)	146
FaiI	YATR	4 cut(s)	37, 132, 144, 482
FatI	CATG	1 cut(s)	142
FbaI	TGATCA	2 cut(s)	127, 418
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	2 cut(s)	128, 284
FriOI	GRGCYC	1 cut(s)	371
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	2 cut(s)	359, 544
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	3 cut(s)	167, 182, 200
HapII	CCGG	1 cut(s)	255
Hin1II	CATG	1 cut(s)	146
HinfI	GANTC	2 cut(s)	92, 514
HpaII	CCGG	1 cut(s)	255
Hpy166II	GTNNAC	2 cut(s)	91, 148
Hpy188I	TCNGA	1 cut(s)	519
Hpy188III	TCNNGA	1 cut(s)	96
Hpy8I	GTNNAC	2 cut(s)	91, 148
HpyAV	CCTTC	2 cut(s)	146, 485
HpyCH4III	ACNGT	2 cut(s)	430, 462
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	7 cut(s)	47, 119, 142, 172, 338, 395, 455
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	146
Ksp22I	TGATCA	2 cut(s)	127, 418
Kzo9I	GATC	4 cut(s)	61, 127, 411, 418
LpnPI	CCDG	9 cut(s)	33, 57, 81, 138, 219, 266, 268, 478, 509
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	2 cut(s)	359, 544
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	2 cut(s)	106, 229
MalI	GATC	4 cut(s)	63, 129, 413, 420
MboI	GATC	4 cut(s)	61, 127, 411, 418
MboII	GAAGA	2 cut(s)	58, 520
MhlI	GDGCHC	2 cut(s)	346, 371
MluCI	AATT	5 cut(s)	22, 52, 260, 389, 423
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	3 cut(s)	93, 389, 420
MnlI	CCTC	7 cut(s)	25, 26, 172, 290, 295, 299, 318
MseI	TTAA	2 cut(s)	398, 450
MslI	CAYNNNNRTG	1 cut(s)	135
MspI	CCGG	1 cut(s)	255
NdeII	GATC	4 cut(s)	61, 127, 411, 418
NlaIII	CATG	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	1 cut(s)	146
NspV	TTCGAA	1 cut(s)	216
PceI	AGGCCT	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	514
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	371
PspPI	GGNCC	1 cut(s)	199
PstI	CTGCAG	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	523
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
RseI	CAYNNNNRTG	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	398, 450
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	4 cut(s)	61, 127, 411, 418
Sau96I	GGNCC	1 cut(s)	199
SbfI	CCTGCAGG	1 cut(s)	49
SchI	GAGTC	1 cut(s)	86
SdaI	CCTGCAGG	1 cut(s)	49
SduI	GDGCHC	2 cut(s)	346, 371
SetI	ASST	7 cut(s)	113, 329, 371, 378, 409, 507, 545
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	2 cut(s)	45, 480
SfuI	TTCGAA	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	135
Sse8387I	CCTGCAGG	1 cut(s)	49
Sse9I	AATT	5 cut(s)	22, 52, 260, 389, 423
SseBI	AGGCCT	1 cut(s)	182
SsiI	CCGC	2 cut(s)	122, 197
SspMI	CTAG	2 cut(s)	359, 544
SstI	GAGCTC	1 cut(s)	371
StuI	AGGCCT	1 cut(s)	182
StyI	CCWWGG	2 cut(s)	403, 433
TaaI	ACNGT	2 cut(s)	430, 462
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	4 cut(s)	60, 216, 288, 378
TasI	AATT	5 cut(s)	22, 52, 260, 389, 423
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	514
Tru1I	TTAA	2 cut(s)	398, 450
Tru9I	TTAA	2 cut(s)	398, 450
TscAI	CASTG	3 cut(s)	238, 472, 528
TseFI	GTSAC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	238, 472, 528
XapI	RAATTY	1 cut(s)	389
XceI	RCATGY	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	2 cut(s)	359, 544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.