Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8378957.1

Orthogroup ID

OG0000882

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1114

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8378957.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 923 bp

atgggaaatttttgtttttgttttgtttatttcatatatatagttgctattcattttgatattgtgttctctcttgaaggattccaccagtgtagatatggttacaaggatgtttctgatcttgagggggtcgttgctggttatgcaaatgctagtatccctcttgaggttatgtggacagacattgattacatggatgcttacaaggatttcactcttgatcccgtcaactttccattagacaggatgaagaactttaccaacaaccttcaccaaaatggtcagaaatacgtgcttatcttggatcccggtattagtatcaatgatagctatggaacctacaccagagggaaggaagcagatatatttataaaacgtgatggcattccttaccagggaaatgtttggcctggcaatgtttactttcctgattttgtaaatccacaaagtgaaccatattgggagaatgagattaaactatttctagaccagctacctgttgatggcctttggcttgatatgaatgaagtatcaaatttccaaacttctaatcccactccgaattccacacttgatgatccaccttacaaaatcaacgatgctggaggccaccgtccgatccttagtaggactattccaggatcagctctacactttggtaatgttacagagtataatgttcataacctatttggcatgttagaagccaaagcaacaaacaaggccttgaccaatttgactggtaagagaccttttgttctctcgagatcgacttttgtaagctctggtaagtacacagcacactggaccggagacaatggtgcaaaatggagtgatttggcatactcaattccgggcattttgaattttggactctttggagttccaatggttggagctgatatatgtggtttctctgggga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

307

Amino Acids

34.47

Weight (kDa)

4.9

Isoelectric Point (pI)

15.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11720
fragaria_vesca	FvH4_3g11610 FvH4_3g11610 FvH4_3g11611
malus_domestica	MD05G1262000.v1.1 MD05G1262100.v1.1 MD05G1262200.v1.1 MD05G1262300.v1.1
prunus_persica	Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103600_v2.0.a1
pyrus_communis	pycom05g24590 pycom10g20100
rosa_chinensis	RchiOBHm_Chr5g0018571 RchiOBHm_Chr5g0018581 RchiOBHm_Chr5g0018611 RchiOBHm_Chr5g0018631 RchiOBHm_Chr5g0020511
rosa_laevigata	RLG00000032381 RLG00000032382 RLG00000032383 RLG00000032384 RLG00000032535
rosa_multiflora	Rmu_co8186534.1_g000001 Rmu_co8378957.1_g000001 Rmu_sc0002579.1_g000013 Rmu_sc0007192.1_g000006 Rmu_sc0008501.1_g000002 Rmu_sc0008501.1_g000005 Rmu_sc0009745.1_g000015 Rmu_sc0018336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057780 Rroxscaffold_1G00059120 Rroxscaffold_1G00059160 Rroxscaffold_1G00059170 Rroxscaffold_1G00059180 Rroxscaffold_7G00184290
rosa_rugosa	Rorug05G0045300 Rorug05G0045400 Rorug05G0045500 Rorug05G0060200
rosa_samantha	Rh5AG136400 Rh5AG136500 Rh5AG136600 Rh5AG136700 Rh5BG135300 Rh5BG135400 Rh5BG135500 Rh5BG150100 Rh5CG147100 Rh5CG147200 Rh5CG147300 Rh5CG147400 Rh5CG161600 Rh5DG136300 Rh5DG136400 Rh5DG136600 Rh5DG136700 Rh5DG149500
rosa_wichuraiana	Rw5G012080 Rw5G012090 Rw5G012100 Rw5G012110 Rw5G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AccB7I	CCANNNNNTGG	1 cut(s)	893
AclWI	GGATC	6 cut(s)	215, 299, 312, 572, 613, 649
AcsI	RAATTY	4 cut(s)	7, 535, 562, 865
AdeI	CACNNNGTG	1 cut(s)	449
AfaI	GTAC	1 cut(s)	794
AfiI	CCNNNNNNNGG	4 cut(s)	166, 395, 503, 893
AgsI	TTSAA	2 cut(s)	77, 865
AjnI	CCWGG	3 cut(s)	393, 409, 637
AluBI	AGCT	5 cut(s)	330, 493, 647, 783, 899
AluI	AGCT	5 cut(s)	330, 493, 647, 783, 899
Alw26I	GTCTC	2 cut(s)	742, 807
AlwI	GGATC	6 cut(s)	215, 299, 312, 572, 613, 649
Ama87I	CYCGRG	1 cut(s)	763
AoxI	GGCC	4 cut(s)	407, 505, 607, 723
ApoI	RAATTY	4 cut(s)	7, 535, 562, 865
AspS9I	GGNCC	1 cut(s)	807
AsuC2I	CCSGG	2 cut(s)	309, 855
AsuHPI	GGTGA	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	763
AvaII	GGWCC	1 cut(s)	807
BamHI	GGATCC	1 cut(s)	304
BccI	CCATC	2 cut(s)	374, 497
BciT130I	CCWGG	3 cut(s)	395, 411, 639
BciVI	GTATCC	1 cut(s)	167
BcnI	CCSGG	2 cut(s)	309, 855
BcoDI	GTCTC	2 cut(s)	742, 807
BfaI	CTAG	2 cut(s)	153, 485
BfuI	GTATCC	1 cut(s)	167
Bme1390I	CCNGG	5 cut(s)	309, 395, 411, 639, 855
Bme18I	GGWCC	1 cut(s)	807
BmeT110I	CYCGRG	1 cut(s)	763
BmgT120I	GGNCC	1 cut(s)	807
BmiI	GGNNCC	2 cut(s)	306, 337
BmrFI	CCNGG	5 cut(s)	309, 395, 411, 639, 855
BmsI	GCATC	2 cut(s)	187, 589
BpmI	CTGGAG	1 cut(s)	624
BpuEI	CTTGAG	2 cut(s)	143, 185
BpuMI	CCSGG	2 cut(s)	309, 855
BsaAI	YACGTR	1 cut(s)	292
BsaI	GGTCTC	1 cut(s)	742
BsaJI	CCNNGG	1 cut(s)	394
BsaWI	WCCGGW	1 cut(s)	809
Bsc4I	CCNNNNNNNGG	4 cut(s)	166, 395, 503, 893
Bse1I	ACTGG	3 cut(s)	88, 745, 809
Bse3DI	GCAATG	1 cut(s)	421
BseBI	CCWGG	3 cut(s)	395, 411, 639
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	3 cut(s)	115, 202, 252
BseLI	CCNNNNNNNGG	4 cut(s)	166, 395, 503, 893
BseMI	GCAATG	1 cut(s)	421
BseNI	ACTGG	3 cut(s)	88, 745, 809
BshFI	GGCC	4 cut(s)	409, 507, 609, 725
BsiHKCI	CYCGRG	1 cut(s)	763
BsiSI	CCGG	3 cut(s)	309, 810, 854
BslI	CCNNNNNNNGG	4 cut(s)	166, 395, 503, 893
BsmAI	GTCTC	2 cut(s)	742, 807
BsmI	GAATGC	1 cut(s)	384
BsnI	GGCC	4 cut(s)	409, 507, 609, 725
Bso31I	GGTCTC	1 cut(s)	742
BsoBI	CYCGRG	1 cut(s)	763
Bsp143I	GATC	7 cut(s)	118, 220, 304, 577, 618, 641, 767
BspANI	GGCC	4 cut(s)	409, 507, 609, 725
BspLI	GGNNCC	2 cut(s)	306, 337
BspPI	GGATC	6 cut(s)	215, 299, 312, 572, 613, 649
BspTNI	GGTCTC	1 cut(s)	742
BsrDI	GCAATG	1 cut(s)	421
BsrI	ACTGG	3 cut(s)	88, 745, 809
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	7 cut(s)	118, 220, 304, 577, 618, 641, 767
Bst2UI	CCWGG	3 cut(s)	395, 411, 639
Bst4CI	ACNGT	1 cut(s)	614
BstBAI	YACGTR	1 cut(s)	292
BstDEI	CTNAG	1 cut(s)	623
BstF5I	GGATG	3 cut(s)	115, 202, 252
BstKTI	GATC	7 cut(s)	121, 223, 307, 580, 621, 644, 770
BstMAI	GTCTC	2 cut(s)	742, 807
BstMBI	GATC	7 cut(s)	118, 220, 304, 577, 618, 641, 767
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	3 cut(s)	395, 411, 639
BstNSI	RCATGY	1 cut(s)	700
BstSCI	CCNGG	5 cut(s)	307, 393, 409, 637, 853
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuI	GTATCC	1 cut(s)	167
BsuRI	GGCC	4 cut(s)	409, 507, 609, 725
BtsCI	GGATG	3 cut(s)	115, 202, 252
BtsIMutI	CAGTG	2 cut(s)	95, 802
Cfr13I	GGNCC	1 cut(s)	807
Csp6I	GTAC	1 cut(s)	793
CviAII	CATG	2 cut(s)	193, 697
CviQI	GTAC	1 cut(s)	793
DdeI	CTNAG	1 cut(s)	623
DpnI	GATC	7 cut(s)	120, 222, 306, 579, 620, 643, 769
DpnII	GATC	7 cut(s)	118, 220, 304, 577, 618, 641, 767
DraIII	CACNNNGTG	1 cut(s)	449
Eco147I	AGGCCT	1 cut(s)	725
Eco31I	GGTCTC	1 cut(s)	742
Eco47I	GGWCC	1 cut(s)	807
Eco88I	CYCGRG	1 cut(s)	763
EcoRI	GAATTC	1 cut(s)	562
EcoRII	CCWGG	3 cut(s)	393, 409, 637
FaeI	CATG	2 cut(s)	196, 700
FatI	CATG	2 cut(s)	192, 696
FokI	GGATG	3 cut(s)	122, 209, 259
FspBI	CTAG	2 cut(s)	153, 485
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	4 cut(s)	409, 507, 609, 725
HapII	CCGG	3 cut(s)	309, 810, 854
Hin1II	CATG	2 cut(s)	196, 700
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	2 cut(s)	81, 873
HpaII	CCGG	3 cut(s)	309, 810, 854
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	5 cut(s)	177, 229, 421, 452, 795
Hpy188I	TCNGA	4 cut(s)	118, 285, 561, 618
Hpy188III	TCNNGA	8 cut(s)	74, 122, 164, 218, 428, 485, 763, 765
Hpy8I	GTNNAC	5 cut(s)	177, 229, 421, 452, 795
HpyAV	CCTTC	3 cut(s)	71, 278, 346
HpyCH4III	ACNGT	1 cut(s)	614
HpyCH4IV	ACGT	2 cut(s)	291, 376
HpyCH4V	TGCA	2 cut(s)	146, 824
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	1 cut(s)	623
HpySE526I	ACGT	2 cut(s)	291, 376
Hsp92II	CATG	2 cut(s)	196, 700
Kzo9I	GATC	7 cut(s)	118, 220, 304, 577, 618, 641, 767
LmnI	GCTCC	1 cut(s)	896
LweI	GCATC	2 cut(s)	187, 589
MaeI	CTAG	2 cut(s)	153, 485
MaeII	ACGT	2 cut(s)	291, 376
MaeIII	GTNAC	2 cut(s)	101, 664
MalI	GATC	7 cut(s)	120, 222, 306, 579, 620, 643, 769
MboI	GATC	7 cut(s)	118, 220, 304, 577, 618, 641, 767
MboII	GAAGA	1 cut(s)	262
MflI	RGATCY	1 cut(s)	304
MluCI	AATT	6 cut(s)	7, 535, 562, 733, 849, 865
MlyI	GAGTC	1 cut(s)	867
MmeI	TCCRAC	1 cut(s)	874
MnlI	CCTC	5 cut(s)	118, 160, 171, 341, 599
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	1 cut(s)	276
MspI	CCGG	3 cut(s)	309, 810, 854
MspR9I	CCNGG	5 cut(s)	309, 395, 411, 639, 855
Mva1269I	GAATGC	1 cut(s)	384
MvaI	CCWGG	3 cut(s)	395, 411, 639
MwoI	GCNNNNNNNGC	1 cut(s)	143
NciI	CCSGG	2 cut(s)	309, 855
NdeII	GATC	7 cut(s)	118, 220, 304, 577, 618, 641, 767
NlaIII	CATG	2 cut(s)	196, 700
NlaIV	GGNNCC	2 cut(s)	306, 337
NspI	RCATGY	1 cut(s)	700
PaeR7I	CTCGAG	1 cut(s)	763
PceI	AGGCCT	1 cut(s)	725
PctI	GAATGC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	81
PflMI	CCANNNNNTGG	1 cut(s)	893
PfoI	TCCNGGA	1 cut(s)	637
PleI	GAGTC	1 cut(s)	867
PpsI	GAGTC	1 cut(s)	867
Ppu21I	YACGTR	1 cut(s)	292
PsiI	TTATAA	1 cut(s)	371
Psp6I	CCWGG	3 cut(s)	393, 409, 637
PspGI	CCWGG	3 cut(s)	393, 409, 637
PspN4I	GGNNCC	2 cut(s)	306, 337
PspPI	GGNCC	1 cut(s)	807
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	1 cut(s)	794
RsaNI	GTAC	1 cut(s)	793
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	474
Sau3AI	GATC	7 cut(s)	118, 220, 304, 577, 618, 641, 767
Sau96I	GGNCC	1 cut(s)	807
SchI	GAGTC	1 cut(s)	867
ScrFI	CCNGG	5 cut(s)	309, 395, 411, 639, 855
SfaNI	GCATC	2 cut(s)	187, 589
Sfr274I	CTCGAG	1 cut(s)	763
SinI	GGWCC	1 cut(s)	807
SlaI	CTCGAG	1 cut(s)	763
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	3 cut(s)	122, 164, 763
SmoI	CTYRAG	3 cut(s)	122, 164, 763
Sse9I	AATT	6 cut(s)	7, 535, 562, 733, 849, 865
SseBI	AGGCCT	1 cut(s)	725
SspMI	CTAG	2 cut(s)	153, 485
StuI	AGGCCT	1 cut(s)	725
StyD4I	CCNGG	5 cut(s)	307, 393, 409, 637, 853
TaaI	ACNGT	1 cut(s)	614
TaiI	ACGT	2 cut(s)	294, 379
TaqI	TCGA	2 cut(s)	764, 770
TasI	AATT	6 cut(s)	7, 535, 562, 733, 849, 865
TatI	WGTACW	1 cut(s)	792
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	2 cut(s)	95, 809
TspDTI	ATGAA	6 cut(s)	22, 41, 263, 536, 540, 671
TspRI	CASTG	2 cut(s)	95, 809
Van91I	CCANNNNNTGG	1 cut(s)	893
VpaK11BI	GGWCC	1 cut(s)	807
XapI	RAATTY	4 cut(s)	7, 535, 562, 865
XbaI	TCTAGA	1 cut(s)	484
XceI	RCATGY	1 cut(s)	700
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XhoI	CTCGAG	1 cut(s)	763
XspI	CTAG	2 cut(s)	153, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.