Rorug05G0045500

Belongs to the glycosyl hydrolase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000882
Physical Location & Seq
Reverse (-)
3964536 .. 3965123
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0045500.1

Sequence Viewer

Length: 588 bp
ATGACGTCGTCCTCCGCTGCTTCTCGATTGGGTTTGGGGATAAGGACTGCTTCTTCCTCCACCTCTAGCGAAATCATGGAGGCTCGAGGCCATATTCTAAGGGCCACCGGCAGGAAAGACCGCCACAACAAGGTCTGCACCGCCAAAGGCCCCAGGGACCACCGCGTCCGGCTCGCCGCCCACACCGCAATTCAATTCTACGACGTGCAAGACCGGCTCGGATATGACCGGCCCAGCAAGGCCGTCGATTGGCTCATCAAGAAAACCAAGGCCGCAATCGACGAGCTGCCGCTGTGGAACCCGAACTCAATTTCTGTTCAGACAACATCTTCTCCGACGGTGACGATATCCGCCGCGCAGGACACGCAGAACGCGAGCCTCCATTTCTCGATGGTGGAGGCTCCGAGTTCTTTGTCTGCTAATCGGCGAGGCGCAATGGTGGGTAGCAGCGGAGTGGCGGAGCTGGTGAATCAGAACAGCTCGAATTTTCTGCATGTGAGGATGGTGTGGAGGCCGAAGTTGTTAATCTTTGTCTGCCTACAATTGCCTCTGATCGAAGTTGGGCTAGAGGCCGAAGTTGTCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 ko00500 ko01100 map00052 map00500 map01100
Pfam Domains
Protein Families
Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

195

Amino Acids

21.19

Weight (kDa)

9.85

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 37 - 118 5.1e-29 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
AatII GACGTC 1 cut(s) 8
AccII CGCG 3 cut(s) 165, 356, 374
AcsI RAATTY 1 cut(s) 484
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 111, 130, 249
AgsI TTSAA 1 cut(s) 194
AjiI CACGTC 1 cut(s) 205
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 3 cut(s) 286, 463, 480
AluI AGCT 3 cut(s) 286, 463, 480
Ama87I CYCGRG 1 cut(s) 84
AoxI GGCC 8 cut(s) 88, 102, 148, 230, 240, 270, 512, 570
ApeKI GCWGC 3 cut(s) 17, 286, 447
ApoI RAATTY 1 cut(s) 484
AspLEI GCGC 2 cut(s) 358, 434
AspS9I GGNCC 4 cut(s) 102, 149, 157, 231
AsuHPI GGTGA 2 cut(s) 352, 478
AvaI CYCGRG 1 cut(s) 84
AvaII GGWCC 1 cut(s) 157
BbvI GCAGC 3 cut(s) 4, 273, 459
BccI CCATC 2 cut(s) 385, 496
BceAI ACGGC 1 cut(s) 227
BcgI CGANNNNNNTGC 4 cut(s) 226, 260, 472, 506
BciT130I CCWGG 1 cut(s) 154
BfaI CTAG 3 cut(s) 66, 566, 586
BisI GCNGC 7 cut(s) 18, 177, 273, 287, 290, 354, 448
BlsI GCNGC 7 cut(s) 19, 178, 274, 288, 291, 355, 449
Bme1390I CCNGG 1 cut(s) 154
Bme18I GGWCC 1 cut(s) 157
BmeT110I CYCGRG 1 cut(s) 84
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 4 cut(s) 102, 149, 157, 231
BmiI GGNNCC 4 cut(s) 151, 158, 299, 402
BmrFI CCNGG 1 cut(s) 154
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 152, 153, 267
BsaXI ACNNNNNCTCC 2 cut(s) 316, 346
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 130, 249
Bse118I RCCGGY 3 cut(s) 107, 213, 228
Bse3DI GCAATG 1 cut(s) 441
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 3 cut(s) 152, 153, 267
BseGI GGATG 1 cut(s) 507
BseLI CCNNNNNNNGG 3 cut(s) 111, 130, 249
BseMI GCAATG 1 cut(s) 441
BseXI GCAGC 3 cut(s) 4, 273, 459
BseYI CCCAGC 1 cut(s) 233
BsgI GTGCAG 1 cut(s) 121
Bsh1236I CGCG 3 cut(s) 165, 356, 374
BshFI GGCC 8 cut(s) 90, 104, 150, 232, 242, 272, 514, 572
BsiHKCI CYCGRG 1 cut(s) 84
BsiSI CCGG 4 cut(s) 108, 169, 214, 229
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 3 cut(s) 111, 130, 249
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 8 cut(s) 90, 104, 150, 232, 242, 272, 514, 572
BsoBI CYCGRG 1 cut(s) 84
Bsp143I GATC 1 cut(s) 552
BspANI GGCC 8 cut(s) 90, 104, 150, 232, 242, 272, 514, 572
BspFNI CGCG 3 cut(s) 165, 356, 374
BspLI GGNNCC 4 cut(s) 151, 158, 299, 402
BsrDI GCAATG 1 cut(s) 441
BsrFI RCCGGY 3 cut(s) 107, 213, 228
BssAI RCCGGY 3 cut(s) 107, 213, 228
BssECI CCNNGG 3 cut(s) 152, 153, 267
BssMI GATC 1 cut(s) 552
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 340
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 174, 376
BstDEI CTNAG 1 cut(s) 98
BstF5I GGATG 1 cut(s) 507
BstFNI CGCG 3 cut(s) 165, 356, 374
BstHHI GCGC 2 cut(s) 358, 434
BstKTI GATC 1 cut(s) 555
BstMBI GATC 1 cut(s) 552
BstMWI GCNNNNNNNGC 3 cut(s) 185, 214, 364
BstNI CCWGG 1 cut(s) 154
BstNSI RCATGY 1 cut(s) 497
BstSCI CCNGG 1 cut(s) 152
BstUI CGCG 3 cut(s) 165, 356, 374
BstV1I GCAGC 3 cut(s) 4, 273, 459
BsuRI GGCC 8 cut(s) 90, 104, 150, 232, 242, 272, 514, 572
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 1 cut(s) 507
Cac8I GCNNGC 2 cut(s) 174, 376
CfoI GCGC 2 cut(s) 358, 434
Cfr10I RCCGGY 3 cut(s) 107, 213, 228
Cfr13I GGNCC 4 cut(s) 102, 149, 157, 231
CseI GACGC 1 cut(s) 154
CviAII CATG 2 cut(s) 76, 494
DdeI CTNAG 1 cut(s) 98
DpnI GATC 1 cut(s) 554
DpnII GATC 1 cut(s) 552
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
EciI GGCGGA 2 cut(s) 340, 473
Eco130I CCWWGG 1 cut(s) 267
Eco32I GATATC 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 157
Eco88I CYCGRG 1 cut(s) 84
EcoO109I RGGNCCY 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 152
EcoRV GATATC 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 2 cut(s) 79, 497
FaiI YATR 4 cut(s) 77, 93, 225, 495
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FaqI GGGAC 1 cut(s) 170
FatI CATG 2 cut(s) 75, 493
Fnu4HI GCNGC 7 cut(s) 18, 177, 273, 287, 290, 354, 448
FokI GGATG 1 cut(s) 514
Fsp4HI GCNGC 7 cut(s) 18, 177, 273, 287, 290, 354, 448
FspBI CTAG 3 cut(s) 66, 566, 586
GlaI GCGC 2 cut(s) 357, 433
GluI GCNGC 7 cut(s) 18, 177, 273, 287, 290, 354, 448
GsaI CCCAGC 1 cut(s) 237
HaeIII GGCC 8 cut(s) 90, 104, 150, 232, 242, 272, 514, 572
HapII CCGG 4 cut(s) 108, 169, 214, 229
HgaI GACGC 1 cut(s) 154
HhaI GCGC 2 cut(s) 358, 434
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 79, 497
Hin6I GCGC 2 cut(s) 356, 432
HinP1I GCGC 2 cut(s) 356, 432
HinfI GANTC 1 cut(s) 469
HpaII CCGG 4 cut(s) 108, 169, 214, 229
HphI GGTGA 2 cut(s) 352, 478
Hpy188I TCNGA 6 cut(s) 221, 321, 336, 405, 474, 552
Hpy188III TCNNGA 3 cut(s) 24, 259, 388
Hpy99I CGWCG 5 cut(s) 10, 206, 248, 284, 340
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 2 cut(s) 5, 204
HpyCH4V TGCA 3 cut(s) 138, 208, 493
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 214, 364
HpyF3I CTNAG 1 cut(s) 98
HpySE526I ACGT 2 cut(s) 5, 204
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 79, 497
HspAI GCGC 2 cut(s) 356, 432
Kzo9I GATC 1 cut(s) 552
LmnI GCTCC 2 cut(s) 406, 460
Lsp1109I GCAGC 3 cut(s) 4, 273, 459
MaeI CTAG 3 cut(s) 66, 566, 586
MaeII ACGT 2 cut(s) 5, 204
MaeIII GTNAC 1 cut(s) 340
MalI GATC 1 cut(s) 554
MboI GATC 1 cut(s) 552
MboII GAAGA 2 cut(s) 45, 321
MfeI CAATTG 1 cut(s) 542
MluCI AATT 5 cut(s) 189, 194, 309, 484, 542
MmeI TCCRAC 1 cut(s) 359
MseI TTAA 1 cut(s) 524
MspA1I CMGCKG 3 cut(s) 17, 292, 450
MspI CCGG 4 cut(s) 108, 169, 214, 229
MspR9I CCNGG 1 cut(s) 154
MunI CAATTG 1 cut(s) 542
MvaI CCWGG 1 cut(s) 154
MvnI CGCG 3 cut(s) 165, 356, 374
MwoI GCNNNNNNNGC 3 cut(s) 185, 214, 364
NdeII GATC 1 cut(s) 552
NlaIII CATG 2 cut(s) 79, 497
NlaIV GGNNCC 4 cut(s) 151, 158, 299, 402
NmuCI GTSAC 1 cut(s) 340
NspI RCATGY 1 cut(s) 497
PaeR7I CTCGAG 1 cut(s) 84
PasI CCCWGGG 1 cut(s) 153
PcsI WCGNNNNNNNCGW 1 cut(s) 371
PfeI GAWTC 1 cut(s) 469
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 7 cut(s) 19, 178, 274, 288, 291, 355, 449
Psp6I CCWGG 1 cut(s) 152
PspFI CCCAGC 1 cut(s) 233
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 4 cut(s) 151, 158, 299, 402
PspPI GGNCC 4 cut(s) 102, 149, 157, 231
PspXI VCTCGAGB 1 cut(s) 84
PsyI GACNNNGTC 1 cut(s) 7
SaqAI TTAA 1 cut(s) 524
SatI GCNGC 7 cut(s) 18, 177, 273, 287, 290, 354, 448
Sau3AI GATC 1 cut(s) 552
Sau96I GGNCC 4 cut(s) 102, 149, 157, 231
ScrFI CCNGG 1 cut(s) 154
SetI ASST 7 cut(s) 8, 65, 135, 207, 288, 465, 482
Sfr274I CTCGAG 1 cut(s) 84
SinI GGWCC 1 cut(s) 157
SlaI CTCGAG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 5 cut(s) 189, 194, 309, 484, 542
SspMI CTAG 3 cut(s) 66, 566, 586
StyD4I CCNGG 1 cut(s) 152
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 2 cut(s) 8, 207
TaqI TCGA 7 cut(s) 25, 85, 246, 279, 389, 482, 555
TasI AATT 5 cut(s) 189, 194, 309, 484, 542
TauI GCSGC 4 cut(s) 179, 275, 292, 356
TfiI GAWTC 1 cut(s) 469
Tru1I TTAA 1 cut(s) 524
Tru9I TTAA 1 cut(s) 524
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 3 cut(s) 17, 286, 447
Tsp45I GTSAC 1 cut(s) 340
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 1 cut(s) 484
XceI RCATGY 1 cut(s) 497
XhoI CTCGAG 1 cut(s) 84
XspI CTAG 3 cut(s) 66, 566, 586
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.