Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000882

Physical Location & Seq

Genomic Coordinates Reverse (-)

39714034 .. 39714761

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1262200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTGGACAGACATTGATCACATGGATGCTTTTAAGGACTTCACTCTTGATCCCGTCAACTTTCCAGTCGATAAGATGCAGAATTTTGTGAATACCCTTCACAATAATAGCCAGAAATATGTCCTCATCGTCAACCCTGGTATTAGTACAAATGCGAGCTATGAAACCCTAACCAGGGGGAAGCAAGCAGATATATTTATAAAAAGTGATGGCAGTTATTACCAGGGAAAGGTTTGGCCTGGAGATGTCTACTTCCCTGATTTTATTCATCCACAAAGTGAAAGTTATTGGACAAATGAGATCAAAATATTCAAAGAGACCCTTCCTTTTGATGGTCTGTGGCTTGACATGAATGAGAATGCGAACTTCTTATCCTCCCCTCAAACTCAAAACTCTACACTTGATGATCCACCATACAAAATCAACAACGGAGGAAACCAGCGTCCGATAATTAGTAACACTGTTCCGGGATCAGCCCTACACTTTGGCAATGTTACGGAATATGATGTTCATAACCTGTTTGGCCTCTTGGAGTCCAAAGCAACAAACAAGGCCTTACTTAATATAACTGAGAAGAGACCCTTTGTGCTATCTAGGTCAACTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

203

Amino Acids

23.0

Weight (kDa)

5.12

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_31_2nd	PF01055	1 - 201	1.6e-48	Glycosyl hydrolases family 31 TIM-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11720
fragaria_vesca	FvH4_3g11610 FvH4_3g11610 FvH4_3g11611
malus_domestica	MD05G1262000.v1.1 MD05G1262100.v1.1 MD05G1262200.v1.1 MD05G1262300.v1.1
prunus_persica	Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103600_v2.0.a1
pyrus_communis	pycom05g24590 pycom10g20100
rosa_chinensis	RchiOBHm_Chr5g0018571 RchiOBHm_Chr5g0018581 RchiOBHm_Chr5g0018611 RchiOBHm_Chr5g0018631 RchiOBHm_Chr5g0020511
rosa_laevigata	RLG00000032381 RLG00000032382 RLG00000032383 RLG00000032384 RLG00000032535
rosa_multiflora	Rmu_co8186534.1_g000001 Rmu_co8378957.1_g000001 Rmu_sc0002579.1_g000013 Rmu_sc0007192.1_g000006 Rmu_sc0008501.1_g000002 Rmu_sc0008501.1_g000005 Rmu_sc0009745.1_g000015 Rmu_sc0018336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057780 Rroxscaffold_1G00059120 Rroxscaffold_1G00059160 Rroxscaffold_1G00059170 Rroxscaffold_1G00059180 Rroxscaffold_7G00184290
rosa_rugosa	Rorug05G0045300 Rorug05G0045400 Rorug05G0045500 Rorug05G0060200
rosa_samantha	Rh5AG136400 Rh5AG136500 Rh5AG136600 Rh5AG136700 Rh5BG135300 Rh5BG135400 Rh5BG135500 Rh5BG150100 Rh5CG147100 Rh5CG147200 Rh5CG147300 Rh5CG147400 Rh5CG161600 Rh5DG136300 Rh5DG136400 Rh5DG136600 Rh5DG136700 Rh5DG149500
rosa_wichuraiana	Rw5G012080 Rw5G012090 Rw5G012100 Rw5G012110 Rw5G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
AccI	GTMKAC	1 cut(s)	249
AclWI	GGATC	3 cut(s)	44, 401, 478
AcsI	RAATTY	1 cut(s)	82
AdeI	CACNNNGTG	1 cut(s)	278
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	4 cut(s)	174, 175, 229, 332
AgsI	TTSAA	1 cut(s)	313
AjnI	CCWGG	4 cut(s)	136, 173, 222, 238
AloI	GAACNNNNNNTCC	2 cut(s)	356, 388
AluBI	AGCT	1 cut(s)	159
AluI	AGCT	1 cut(s)	159
Alw26I	GTCTC	2 cut(s)	311, 571
AlwI	GGATC	3 cut(s)	44, 401, 478
AoxI	GGCC	3 cut(s)	236, 523, 552
ApoI	RAATTY	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	468
BccI	CCATC	2 cut(s)	203, 326
BciT130I	CCWGG	4 cut(s)	138, 175, 224, 240
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	468
BcoDI	GTCTC	2 cut(s)	311, 571
BfaI	CTAG	1 cut(s)	594
Bme1390I	CCNGG	5 cut(s)	138, 175, 224, 240, 468
BmrFI	CCNGG	5 cut(s)	138, 175, 224, 240, 468
BmsI	GCATC	2 cut(s)	16, 66
BpmI	CTGGAG	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	468
BsaI	GGTCTC	2 cut(s)	311, 571
BsaJI	CCNNGG	3 cut(s)	136, 174, 223
Bsc4I	CCNNNNNNNGG	4 cut(s)	174, 175, 229, 332
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	496
BseBI	CCWGG	4 cut(s)	138, 175, 224, 240
BseDI	CCNNGG	3 cut(s)	136, 174, 223
BseGI	GGATG	2 cut(s)	31, 268
BseLI	CCNNNNNNNGG	4 cut(s)	174, 175, 229, 332
BseMI	GCAATG	1 cut(s)	496
BseMII	CTCAG	1 cut(s)	561
BseNI	ACTGG	1 cut(s)	65
BshFI	GGCC	3 cut(s)	238, 525, 554
BsiSI	CCGG	1 cut(s)	467
BslI	CCNNNNNNNGG	4 cut(s)	174, 175, 229, 332
BsmAI	GTCTC	2 cut(s)	311, 571
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	3 cut(s)	238, 525, 554
Bso31I	GGTCTC	2 cut(s)	311, 571
Bsp143I	GATC	5 cut(s)	16, 49, 300, 406, 470
BspANI	GGCC	3 cut(s)	238, 525, 554
BspCNI	CTCAG	1 cut(s)	562
BspPI	GGATC	3 cut(s)	44, 401, 478
BspTNI	GGTCTC	2 cut(s)	311, 571
BsrDI	GCAATG	1 cut(s)	496
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	3 cut(s)	136, 174, 223
BssMI	GATC	5 cut(s)	16, 49, 300, 406, 470
Bst2UI	CCWGG	4 cut(s)	138, 175, 224, 240
Bst4CI	ACNGT	1 cut(s)	463
Bst6I	CTCTTC	1 cut(s)	569
BstC8I	GCNNGC	2 cut(s)	157, 186
BstDEI	CTNAG	1 cut(s)	570
BstF5I	GGATG	2 cut(s)	31, 268
BstKTI	GATC	5 cut(s)	19, 52, 303, 409, 473
BstMAI	GTCTC	2 cut(s)	311, 571
BstMBI	GATC	5 cut(s)	16, 49, 300, 406, 470
BstNI	CCWGG	4 cut(s)	138, 175, 224, 240
BstSCI	CCNGG	5 cut(s)	136, 173, 222, 238, 466
BsuRI	GGCC	3 cut(s)	238, 525, 554
BtsCI	GGATG	2 cut(s)	31, 268
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	2 cut(s)	157, 186
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	2 cut(s)	22, 349
CviJI	RGCY	7 cut(s)	111, 159, 238, 343, 476, 525, 554
CviKI_1	RGCY	7 cut(s)	111, 159, 238, 343, 476, 525, 554
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	5 cut(s)	18, 51, 302, 408, 472
DpnII	GATC	5 cut(s)	16, 49, 300, 406, 470
DraIII	CACNNNGTG	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
Eco147I	AGGCCT	1 cut(s)	554
Eco31I	GGTCTC	2 cut(s)	311, 571
EcoRII	CCWGG	4 cut(s)	136, 173, 222, 238
FaeI	CATG	2 cut(s)	25, 352
FalI	AAGNNNNNCTT	4 cut(s)	306, 338, 566, 598
FatI	CATG	2 cut(s)	21, 348
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	249
FokI	GGATG	2 cut(s)	38, 255
FspBI	CTAG	1 cut(s)	594
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	238, 525, 554
HapII	CCGG	1 cut(s)	467
HgaI	GACGC	1 cut(s)	431
Hin1II	CATG	2 cut(s)	25, 352
HincII	GTYRAC	3 cut(s)	58, 133, 600
HindII	GTYRAC	3 cut(s)	58, 133, 600
HinfI	GANTC	1 cut(s)	533
HpaII	CCGG	1 cut(s)	467
Hpy166II	GTNNAC	5 cut(s)	6, 58, 133, 250, 600
Hpy188I	TCNGA	1 cut(s)	447
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	5 cut(s)	6, 58, 133, 250, 600
HpyAV	CCTTC	2 cut(s)	107, 332
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4V	TGCA	1 cut(s)	79
HpyF3I	CTNAG	1 cut(s)	570
Hsp92II	CATG	2 cut(s)	25, 352
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	5 cut(s)	16, 49, 300, 406, 470
LweI	GCATC	2 cut(s)	16, 66
MaeI	CTAG	1 cut(s)	594
MaeIII	GTNAC	2 cut(s)	455, 493
MalI	GATC	5 cut(s)	18, 51, 302, 408, 472
MboI	GATC	5 cut(s)	16, 49, 300, 406, 470
MboII	GAAGA	1 cut(s)	586
MluCI	AATT	2 cut(s)	82, 450
MlyI	GAGTC	1 cut(s)	542
MnlI	CCTC	5 cut(s)	134, 385, 390, 425, 536
MseI	TTAA	2 cut(s)	33, 561
MslI	CAYNNNNRTG	1 cut(s)	24
MspI	CCGG	1 cut(s)	467
MspR9I	CCNGG	5 cut(s)	138, 175, 224, 240, 468
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	4 cut(s)	138, 175, 224, 240
NciI	CCSGG	1 cut(s)	468
NdeII	GATC	5 cut(s)	16, 49, 300, 406, 470
NlaIII	CATG	2 cut(s)	25, 352
PceI	AGGCCT	1 cut(s)	554
PctI	GAATGC	1 cut(s)	364
PfoI	TCCNGGA	1 cut(s)	466
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
PsiI	TTATAA	1 cut(s)	200
Psp6I	CCWGG	4 cut(s)	136, 173, 222, 238
PspGI	CCWGG	4 cut(s)	136, 173, 222, 238
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
RseI	CAYNNNNRTG	1 cut(s)	24
SaqAI	TTAA	2 cut(s)	33, 561
Sau3AI	GATC	5 cut(s)	16, 49, 300, 406, 470
SchI	GAGTC	1 cut(s)	542
ScrFI	CCNGG	5 cut(s)	138, 175, 224, 240, 468
SetI	ASST	4 cut(s)	161, 234, 519, 599
SfaNI	GCATC	2 cut(s)	16, 66
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	2 cut(s)	82, 450
SseBI	AGGCCT	1 cut(s)	554
SspI	AATATT	1 cut(s)	309
SspMI	CTAG	1 cut(s)	594
StuI	AGGCCT	1 cut(s)	554
StyD4I	CCNGG	5 cut(s)	136, 173, 222, 238, 466
TaaI	ACNGT	1 cut(s)	463
TaqI	TCGA	1 cut(s)	69
TasI	AATT	2 cut(s)	82, 450
TatI	WGTACW	1 cut(s)	146
Tru1I	TTAA	2 cut(s)	33, 561
Tru9I	TTAA	2 cut(s)	33, 561
TscAI	CASTG	1 cut(s)	466
TspDTI	ATGAA	4 cut(s)	177, 257, 365, 500
TspGWI	ACGGA	2 cut(s)	444, 512
TspRI	CASTG	1 cut(s)	466
XapI	RAATTY	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.