Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000882

Physical Location & Seq

Genomic Coordinates Reverse (-)

39713413 .. 39713894

Gene Structure 482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1262100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAAGAACTCTGCAGGGGTGGGAGCCTTTTACCCGTTTTCAAGAGATCACTCCGATATCCATTCAAGCCGGCAAGAGCTCTACCTTTGGGAATCAGTAGCTGCATCAGCCAGGAAGGTGCTCGGCCCGCGCTACCGGTTGCTCCCCTTGTTTTACACATCAATGTATGAGGCACACAAAAATGGAACCCCAATTGCAAGACCCCTTTTCTTCTCATTTCCTCAAGATATCAATACTTACGAGATTAGGTCACAGTTTCTGATTGGTAGAGGTGTGCTGGTTTCACCTGTGTTGAAGCAAGGGGAAAACTCGGTTGAGGCATACTTTACTGAAGACAACTGGTTCGATCTCTTCAACTACACGAACTCGGTGAATGTAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

128

Amino Acids

14.58

Weight (kDa)

6.83

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_31_2nd	PF01055	7 - 53	5.9e-12	Glycosyl hydrolases family 31 TIM-barrel domain
Glyco_hydro_31_3rd	PF21365	62 - 121	2.5e-18	Glycosyl hydrolase family 31 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11720
fragaria_vesca	FvH4_3g11610 FvH4_3g11610 FvH4_3g11611
malus_domestica	MD05G1262000.v1.1 MD05G1262100.v1.1 MD05G1262200.v1.1 MD05G1262300.v1.1
prunus_persica	Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103600_v2.0.a1
pyrus_communis	pycom05g24590 pycom10g20100
rosa_chinensis	RchiOBHm_Chr5g0018571 RchiOBHm_Chr5g0018581 RchiOBHm_Chr5g0018611 RchiOBHm_Chr5g0018631 RchiOBHm_Chr5g0020511
rosa_laevigata	RLG00000032381 RLG00000032382 RLG00000032383 RLG00000032384 RLG00000032535
rosa_multiflora	Rmu_co8186534.1_g000001 Rmu_co8378957.1_g000001 Rmu_sc0002579.1_g000013 Rmu_sc0007192.1_g000006 Rmu_sc0008501.1_g000002 Rmu_sc0008501.1_g000005 Rmu_sc0009745.1_g000015 Rmu_sc0018336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057780 Rroxscaffold_1G00059120 Rroxscaffold_1G00059160 Rroxscaffold_1G00059170 Rroxscaffold_1G00059180 Rroxscaffold_7G00184290
rosa_rugosa	Rorug05G0045300 Rorug05G0045400 Rorug05G0045500 Rorug05G0060200
rosa_samantha	Rh5AG136400 Rh5AG136500 Rh5AG136600 Rh5AG136700 Rh5BG135300 Rh5BG135400 Rh5BG135500 Rh5BG150100 Rh5CG147100 Rh5CG147200 Rh5CG147300 Rh5CG147400 Rh5CG161600 Rh5DG136300 Rh5DG136400 Rh5DG136600 Rh5DG136700 Rh5DG149500
rosa_wichuraiana	Rw5G012080 Rw5G012090 Rw5G012100 Rw5G012110 Rw5G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	130
AciI	CCGC	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	351
AgeI	ACCGGT	1 cut(s)	135
AgsI	TTSAA	4 cut(s)	42, 66, 295, 355
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	3 cut(s)	79, 101, 381
AluI	AGCT	3 cut(s)	79, 101, 381
Alw21I	GWGCWC	2 cut(s)	81, 123
AlwNI	CAGNNNCTG	2 cut(s)	101, 259
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	1 cut(s)	101
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AsiGI	ACCGGT	1 cut(s)	135
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	2 cut(s)	276, 382
BanII	GRGCYC	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	2 cut(s)	81, 123
BbvI	GCAGC	1 cut(s)	88
BciT130I	CCWGG	1 cut(s)	112
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	2 cut(s)	25, 187
BmrFI	CCNGG	1 cut(s)	112
BmsI	GCATC	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	135
Bse118I	RCCGGY	2 cut(s)	69, 135
Bse1I	ACTGG	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	112
BseNI	ACTGG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	88
Bsh1236I	CGCG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	126
BshTI	ACCGGT	1 cut(s)	135
BsiHKAI	GWGCWC	2 cut(s)	81, 123
BsiSI	CCGG	2 cut(s)	70, 136
BsnI	GGCC	1 cut(s)	126
Bsp1286I	GDGCHC	2 cut(s)	81, 123
Bsp143I	GATC	2 cut(s)	46, 346
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	25, 187
BspMAI	CTGCAG	1 cut(s)	16
BsrFI	RCCGGY	2 cut(s)	69, 135
BsrI	ACTGG	1 cut(s)	344
BssAI	RCCGGY	2 cut(s)	69, 135
BssMI	GATC	2 cut(s)	46, 346
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	71, 128
BstFNI	CGCG	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	2 cut(s)	49, 349
BstMBI	GATC	2 cut(s)	46, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 127
BstNI	CCWGG	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	110
BstSFI	CTRYAG	1 cut(s)	12
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	71, 128
CaiI	CAGNNNCTG	2 cut(s)	101, 259
CfoI	GCGC	1 cut(s)	132
Cfr10I	RCCGGY	2 cut(s)	69, 135
Cfr13I	GGNCC	1 cut(s)	125
CspAI	ACCGGT	1 cut(s)	135
CviJI	RGCY	7 cut(s)	26, 69, 79, 101, 110, 126, 381
CviKI_1	RGCY	7 cut(s)	26, 69, 79, 101, 110, 126, 381
DpnI	GATC	2 cut(s)	48, 348
DpnII	GATC	2 cut(s)	46, 346
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Ecl136II	GAGCTC	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	81
Eco32I	GATATC	2 cut(s)	58, 229
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	110
EcoRV	GATATC	2 cut(s)	58, 229
EcoT38I	GRGCYC	1 cut(s)	81
FaiI	YATR	2 cut(s)	168, 322
FauI	CCCGC	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	102
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	102
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	2 cut(s)	70, 136
HhaI	GCGC	1 cut(s)	132
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	2 cut(s)	70, 136
HphI	GGTGA	2 cut(s)	276, 382
Hpy188I	TCNGA	2 cut(s)	55, 261
Hpy188III	TCNNGA	2 cut(s)	42, 224
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4V	TGCA	3 cut(s)	14, 104, 197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 127
HspAI	GCGC	1 cut(s)	130
KroI	GCCGGC	1 cut(s)	69
KroNI	GCCGGC	1 cut(s)	71
Kzo9I	GATC	2 cut(s)	46, 346
LmnI	GCTCC	2 cut(s)	23, 147
LpnPI	CCDG	7 cut(s)	83, 97, 124, 149, 263, 300, 325
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	2 cut(s)	48, 348
MboI	GATC	2 cut(s)	46, 346
MboII	GAAGA	4 cut(s)	16, 202, 343, 344
MfeI	CAATTG	1 cut(s)	192
MhlI	GDGCHC	2 cut(s)	81, 123
MluCI	AATT	1 cut(s)	192
MnlI	CCTC	4 cut(s)	163, 231, 263, 310
MroNI	GCCGGC	1 cut(s)	69
MslI	CAYNNNNRTG	2 cut(s)	161, 180
MspI	CCGG	2 cut(s)	70, 136
MspR9I	CCNGG	1 cut(s)	112
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	107, 127
NaeI	GCCGGC	1 cut(s)	71
NdeII	GATC	2 cut(s)	46, 346
NgoMIV	GCCGGC	1 cut(s)	69
NlaIV	GGNNCC	2 cut(s)	25, 187
NmeAIII	GCCGAG	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	249
PdiI	GCCGGC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	92
PinAI	ACCGGT	1 cut(s)	135
PkrI	GCNGC	1 cut(s)	103
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	2 cut(s)	25, 187
PspPI	GGNCC	1 cut(s)	125
PstI	CTGCAG	1 cut(s)	16
PstNI	CAGNNNCTG	2 cut(s)	101, 259
RseI	CAYNNNNRTG	2 cut(s)	161, 180
SacI	GAGCTC	1 cut(s)	81
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	2 cut(s)	46, 346
Sau96I	GGNCC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	2 cut(s)	81, 123
SetI	ASST	8 cut(s)	81, 87, 103, 120, 251, 274, 289, 383
SfaNI	GCATC	1 cut(s)	113
SfcI	CTRYAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	2 cut(s)	161, 180
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	1 cut(s)	192
SsiI	CCGC	1 cut(s)	128
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	345
TasI	AATT	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	92
TseFI	GTSAC	1 cut(s)	249
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	249
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.