Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000882

Physical Location & Seq

Genomic Coordinates Forward (+)

3957525 .. 3957827

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0045300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGGTAGCGCCGCCGTGCCCTTCCTCGACAAACTCGCCCGCACCGCCTTCGCCGCCTTAAGCCTTGGCGCCGGCTCCACCATCGTCACCTCCACCCTCTACACTGTCGACGCCGGCCAGGGCGCCGTCCTCGGCGTCCTCGACGACACCAAGCCCTACATCTTCGACATCCGGACCCGGCCTCACGAGTTCTCCTCCGTCTCCTGCACCAAGGATCTACAGATGGTCGACCTCACCTTAGGGTTCTCGTCTGCCCAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

87

Amino Acids

9.12

Weight (kDa)

4.94

Isoelectric Point (pI)

19.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11720
fragaria_vesca	FvH4_3g11610 FvH4_3g11610 FvH4_3g11611
malus_domestica	MD05G1262000.v1.1 MD05G1262100.v1.1 MD05G1262200.v1.1 MD05G1262300.v1.1
prunus_persica	Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103600_v2.0.a1
pyrus_communis	pycom05g24590 pycom10g20100
rosa_chinensis	RchiOBHm_Chr5g0018571 RchiOBHm_Chr5g0018581 RchiOBHm_Chr5g0018611 RchiOBHm_Chr5g0018631 RchiOBHm_Chr5g0020511
rosa_laevigata	RLG00000032381 RLG00000032382 RLG00000032383 RLG00000032384 RLG00000032535
rosa_multiflora	Rmu_co8186534.1_g000001 Rmu_co8378957.1_g000001 Rmu_sc0002579.1_g000013 Rmu_sc0007192.1_g000006 Rmu_sc0008501.1_g000002 Rmu_sc0008501.1_g000005 Rmu_sc0009745.1_g000015 Rmu_sc0018336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057780 Rroxscaffold_1G00059120 Rroxscaffold_1G00059160 Rroxscaffold_1G00059170 Rroxscaffold_1G00059180 Rroxscaffold_7G00184290
rosa_rugosa	Rorug05G0045300 Rorug05G0045400 Rorug05G0045500 Rorug05G0060200
rosa_samantha	Rh5AG136400 Rh5AG136500 Rh5AG136600 Rh5AG136700 Rh5BG135300 Rh5BG135400 Rh5BG135500 Rh5BG150100 Rh5CG147100 Rh5CG147200 Rh5CG147300 Rh5CG147400 Rh5CG161600 Rh5DG136300 Rh5DG136400 Rh5DG136600 Rh5DG136700 Rh5DG149500
rosa_wichuraiana	Rw5G012080 Rw5G012090 Rw5G012100 Rw5G012110 Rw5G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	68, 122
AccI	GTMKAC	2 cut(s)	108, 228
AccIII	TCCGGA	1 cut(s)	171
AciI	CCGC	4 cut(s)	12, 40, 45, 54
AclWI	GGATC	1 cut(s)	222
AcoI	YGGCCR	1 cut(s)	115
AcyI	GRCGYC	4 cut(s)	69, 111, 123, 135
AflII	CTTAAG	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	222
Aor13HI	TCCGGA	1 cut(s)	171
AoxI	GGCC	2 cut(s)	115, 179
AspLEI	GCGC	3 cut(s)	11, 71, 125
AspS9I	GGNCC	1 cut(s)	174
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	2 cut(s)	79, 226
AvaII	GGWCC	1 cut(s)	174
AxyI	CCTNAGG	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	21
BanI	GGYRCC	2 cut(s)	68, 122
BauI	CACGAG	1 cut(s)	185
BccI	CCATC	2 cut(s)	89, 217
BceAI	ACGGC	1 cut(s)	110
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	1 cut(s)	119
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	205
BfmI	CTRYAG	1 cut(s)	218
BfoI	RGCGCY	3 cut(s)	12, 72, 126
BfrI	CTTAAG	1 cut(s)	58
BisI	GCNGC	2 cut(s)	12, 54
BlsI	GCNGC	2 cut(s)	13, 55
Bme1390I	CCNGG	2 cut(s)	119, 178
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	4 cut(s)	70, 76, 124, 176
BmrFI	CCNGG	2 cut(s)	119, 178
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
BpuMI	CCSGG	1 cut(s)	178
BsaHI	GRCGYC	4 cut(s)	69, 111, 123, 135
BsaJI	CCNNGG	4 cut(s)	64, 118, 130, 210
BsaWI	WCCGGW	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bse118I	RCCGGY	2 cut(s)	71, 113
Bse21I	CCTNAGG	1 cut(s)	238
BseAI	TCCGGA	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	4 cut(s)	64, 118, 130, 210
BseGI	GGATG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	184
BseSI	GKGCMC	1 cut(s)	21
BsgI	GTGCAG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	117, 181
BshNI	GGYRCC	2 cut(s)	68, 122
BsiSI	CCGG	4 cut(s)	72, 114, 172, 178
BsmAI	GTCTC	1 cut(s)	205
BsmBI	CGTCTC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	117, 181
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp13I	TCCGGA	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	4 cut(s)	12, 40, 45, 54
BspANI	GGCC	2 cut(s)	117, 181
BspEI	TCCGGA	1 cut(s)	171
BspLI	GGNNCC	4 cut(s)	70, 76, 124, 176
BspPI	GGATC	1 cut(s)	222
BspT107I	GGYRCC	2 cut(s)	68, 122
BspTI	CTTAAG	1 cut(s)	58
BsrFI	RCCGGY	2 cut(s)	71, 113
BssAI	RCCGGY	2 cut(s)	71, 113
BssECI	CCNNGG	4 cut(s)	64, 118, 130, 210
BssMI	GATC	1 cut(s)	214
BssNI	GRCGYC	4 cut(s)	69, 111, 123, 135
BssSI	CACGAG	1 cut(s)	185
BssT1I	CCWWGG	2 cut(s)	64, 210
Bst2BI	CACGAG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	106
BstACI	GRCGYC	4 cut(s)	69, 111, 123, 135
BstAFI	CTTAAG	1 cut(s)	58
BstC8I	GCNNGC	3 cut(s)	40, 73, 115
BstDEI	CTNAG	1 cut(s)	238
BstF5I	GGATG	1 cut(s)	168
BstH2I	RGCGCY	3 cut(s)	12, 72, 126
BstHHI	GCGC	3 cut(s)	11, 71, 125
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 53
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	117, 176
BstSFI	CTRYAG	1 cut(s)	218
BstSLI	GKGCMC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
Bsu36I	CCTNAGG	1 cut(s)	238
BsuRI	GGCC	2 cut(s)	117, 181
BtsCI	GGATG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	3 cut(s)	40, 73, 115
CfoI	GCGC	3 cut(s)	11, 71, 125
Cfr10I	RCCGGY	2 cut(s)	71, 113
Cfr13I	GGNCC	1 cut(s)	174
CseI	GACGC	2 cut(s)	119, 124
CviJI	RGCY	5 cut(s)	63, 75, 117, 154, 181
CviKI_1	RGCY	5 cut(s)	63, 75, 117, 154, 181
DdeI	CTNAG	1 cut(s)	238
DinI	GGCGCC	2 cut(s)	70, 124
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	64, 210
Eco47I	GGWCC	1 cut(s)	174
Eco81I	CCTNAGG	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	2 cut(s)	64, 210
EgeI	GGCGCC	2 cut(s)	70, 124
EheI	GGCGCC	2 cut(s)	70, 124
ErhI	CCWWGG	2 cut(s)	64, 210
Esp3I	CGTCTC	1 cut(s)	205
FauI	CCCGC	1 cut(s)	47
FblI	GTMKAC	2 cut(s)	108, 228
Fnu4HI	GCNGC	2 cut(s)	12, 54
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	2 cut(s)	12, 54
GlaI	GCGC	3 cut(s)	10, 70, 124
GluI	GCNGC	2 cut(s)	12, 54
HaeII	RGCGCY	3 cut(s)	12, 72, 126
HaeIII	GGCC	2 cut(s)	117, 181
HapII	CCGG	4 cut(s)	72, 114, 172, 178
HgaI	GACGC	2 cut(s)	119, 124
HhaI	GCGC	3 cut(s)	11, 71, 125
Hin1I	GRCGYC	4 cut(s)	69, 111, 123, 135
Hin6I	GCGC	3 cut(s)	9, 69, 123
HinP1I	GCGC	3 cut(s)	9, 69, 123
HincII	GTYRAC	2 cut(s)	109, 229
HindII	GTYRAC	2 cut(s)	109, 229
HpaII	CCGG	4 cut(s)	72, 114, 172, 178
HphI	GGTGA	2 cut(s)	79, 226
Hpy166II	GTNNAC	2 cut(s)	109, 229
Hpy188III	TCNNGA	2 cut(s)	172, 185
Hpy8I	GTNNAC	2 cut(s)	109, 229
Hpy99I	CGWCG	2 cut(s)	113, 146
HpyAV	CCTTC	2 cut(s)	31, 58
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	207
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 53
HpyF3I	CTNAG	1 cut(s)	238
Hsp92I	GRCGYC	4 cut(s)	69, 111, 123, 135
HspAI	GCGC	3 cut(s)	9, 69, 123
KasI	GGCGCC	2 cut(s)	68, 122
Kpn2I	TCCGGA	1 cut(s)	171
KroI	GCCGGC	2 cut(s)	71, 113
KroNI	GCCGGC	2 cut(s)	73, 115
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	7 cut(s)	85, 104, 127, 131, 185, 191, 217
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	1 cut(s)	154
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	21
Mly113I	GGCGCC	2 cut(s)	69, 123
MnlI	CCTC	8 cut(s)	35, 100, 107, 140, 149, 192, 205, 242
MroI	TCCGGA	1 cut(s)	171
MroNI	GCCGGC	2 cut(s)	71, 113
MseI	TTAA	2 cut(s)	59, 262
MspCI	CTTAAG	1 cut(s)	58
MspI	CCGG	4 cut(s)	72, 114, 172, 178
MspR9I	CCNGG	2 cut(s)	119, 178
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	44, 53
NaeI	GCCGGC	2 cut(s)	73, 115
NarI	GGCGCC	2 cut(s)	69, 123
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	1 cut(s)	214
NgoMIV	GCCGGC	2 cut(s)	71, 113
NlaIV	GGNNCC	4 cut(s)	70, 76, 124, 176
NmeAIII	GCCGAG	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PdiI	GCCGGC	2 cut(s)	73, 115
PkrI	GCNGC	2 cut(s)	13, 55
PluTI	GGCGCC	2 cut(s)	72, 126
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	4 cut(s)	70, 76, 124, 176
PspPI	GGNCC	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	214
SalI	GTCGAC	2 cut(s)	107, 227
SaqAI	TTAA	2 cut(s)	59, 262
SatI	GCNGC	2 cut(s)	12, 54
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	174
ScrFI	CCNGG	2 cut(s)	119, 178
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	3 cut(s)	92, 234, 239
SfcI	CTRYAG	1 cut(s)	218
SfoI	GGCGCC	2 cut(s)	70, 124
SinI	GGWCC	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
SsiI	CCGC	4 cut(s)	12, 40, 45, 54
SspDI	GGCGCC	2 cut(s)	68, 122
StyD4I	CCNGG	2 cut(s)	117, 176
StyI	CCWWGG	2 cut(s)	64, 210
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	5 cut(s)	27, 108, 141, 165, 228
TauI	GCSGC	2 cut(s)	14, 56
Tru1I	TTAA	2 cut(s)	59, 262
Tru9I	TTAA	2 cut(s)	59, 262
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	85
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	1 cut(s)	109
Vha464I	CTTAAG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	174
XmiI	GTMKAC	2 cut(s)	108, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.