RchiOBHm_Chr5g0020511

Belongs to the glycosyl hydrolase 31 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
14734449 .. 14736558
2110 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30059

Sequence Viewer

Length: 1764 bp
ATGGGAGTTTTTTTTTTTTACTTCATATATATAATTGCTATTCACTTTGATATTGTGTTCTCTCTTGTAGGATTCCACCAGTGTAGATATGGTTACAAGGATGTTTCTGATCTTGAGGGGGTCGTTGCTGGTTATGCAAATGCTAGTATCCCTCTTGAGGTTATGTGGACAGACATTGATTACATGGATGCTTACAAGGATTTCACTCTTGATCCCGTCAACTTTCCATTAGACAGGATGAAGAACTTTACCAACAACCTTCACCAAAATGGTCAGAAATACGTGCTCATCTTGGATCCCGGTATTAGTATCAATGATAGCTATGGAACCTACACCAGAGGGAAGGAAGCAGATATATTTATAAAACGTGATGGCATTCCTTACCAGGGAAATGTTTGGCCTGGCAATGTTTACTTTCCTGATTTTGTAAATCCACAAAGTGAACCATATTGGGAGAATGAGATTAAACTATTTCTAGACCAGCTACCTGTTGATGGCCTTTGGCTTGATATGAATGAAGTATCAAATTTCCAAACTTCTAATCCCACTCCGAATTCCACACTTGATGATCCGCCTTACAAAATCAACGATGCTGGAGGCCACCGTCCGATCCTTAGTAGGACTATTCCAGGATCAGCTCTACACTTTGGTAATGTGACAGAGTATAATGTTCATAACCTATTTGGCATGTTACAAGCCAAAGCAACAAACAAGGCCTTGACCAATTTGACTGGTAAGAGACCTTTTGTTCTCTCGAGATCGACTTTTGTAAGCTCTGGTAAGTACACAGCACACTGGACCGGTGATAATGGTGCAAAATGGAGTGATTTGGCATACTCAATTCCGGGCATTTTGAATTTTGGACTCTTTGGAGTTCCAATGGTTGGAGCTGATATATGTGGTTTCTCTGGGGATACTAATGAAGAACTCTGCCGGCGTTGGATTCAGCTAGGGGCCTTTTACCCCTTTTCAAGAGATCATTCGGATAAGAATTCAATCCGGCAGGAGCTCTATGTTTGGGAATCAGTGGCTGCATCAGCAAAAAAAGTGCTGGGGCTACGTTACCGGTTGCTTCCCTTGTTCTATACATCAATGTATCAAGCACACAAGAACGGGACTCCAATTGCAAGGCCCGTATTCTTCTCATTTCCTGAAGATACCAATACATACAGTATCTATTCACAGTTTCTGATTGGTAAAGGCGTAATGGTGTCACCTGTGTTGCAGCAAGGAGCAAATTCAGTCGAGGCATATTTTCCTGCAGGAAATTGGTTCGATCTCTTCAACTACACATCAGTTAGTGTAGACTCTGGAAAGAATGTTACGTTGGATGCACCGCCTGATCATATCAATGTGCATGTCCACGAAGGAAACATTTTGGCCTTGCAAGGAGAGGCCTTGACAACACAAGCAGCCCGAAACACTACATTCGAACTTTTGGTGGTCACTGGTAGTAGCAATGAGAGTACCGGAGAATTGTTCTTGGATGATGGAGAGGAAGTTGAAATGGGAGGAGAGGGAGGGAAGTGGAGTTTTGTGAGGTTTCGTTCTGCAAGAGCACAAAATGGAAGTCTAGTTTTGAGCTCGAAGGTCGAAAATGGAGAATTTGCATTAAGCCAAGGTTGGATCATTGATAAAATTACCGTCCTTGGGTTGGACAAAGTTAATGCAACACAGTCCAGTGTATCCCTTCCTATAGGAAAGGAGTTTGAGTTGGAGCTGAAGCCGAATCAGACACTGACGAAACCAAAAACATATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.

Protein Analysis

587

Amino Acids

65.56

Weight (kDa)

5.19

Isoelectric Point (pI)

26.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_31_2nd PF01055 23 - 363 1.6e-118 Glycosyl hydrolases family 31 TIM-barrel domain
Glyco_hydro_31_3rd PF21365 372 - 460 1.7e-24 Glycosyl hydrolase family 31 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 362
AccB7I CCANNNNNTGG 1 cut(s) 884
AccI GTMKAC 1 cut(s) 1305
AciI CCGC 2 cut(s) 572, 1337
AclWI GGATC 7 cut(s) 206, 290, 303, 563, 604, 640, 1634
AcsI RAATTY 6 cut(s) 526, 553, 856, 991, 1237, 1604
AcuI CTGAAG 2 cut(s) 1173, 1742
AdeI CACNNNGTG 1 cut(s) 440
AfaI GTAC 2 cut(s) 785, 1468
AfiI CCNNNNNNNGG 6 cut(s) 157, 386, 494, 884, 1650, 1654
AgeI ACCGGT 2 cut(s) 800, 1065
AgsI TTSAA 5 cut(s) 856, 972, 996, 1285, 1505
AjnI CCWGG 3 cut(s) 384, 400, 628
AjuI GAANNNNNNNTTGG 2 cut(s) 1310, 1342
AluBI AGCT 9 cut(s) 321, 484, 638, 774, 890, 949, 1009, 1584, 1720
AluI AGCT 9 cut(s) 321, 484, 638, 774, 890, 949, 1009, 1584, 1720
Alw21I GWGCWC 4 cut(s) 288, 1011, 1561, 1586
Alw26I GTCTC 1 cut(s) 733
AlwI GGATC 7 cut(s) 206, 290, 303, 563, 604, 640, 1634
AlwNI CAGNNNCTG 3 cut(s) 1031, 1189, 1738
Ama87I CYCGRG 1 cut(s) 754
AoxI GGCC 8 cut(s) 398, 496, 598, 714, 954, 1130, 1380, 1395
ApeKI GCWGC 3 cut(s) 1031, 1225, 1412
ApoI RAATTY 6 cut(s) 526, 553, 856, 991, 1237, 1604
ArsI GACNNNNNNTTYG 2 cut(s) 1555, 1587
AsiGI ACCGGT 2 cut(s) 800, 1065
AspS9I GGNCC 3 cut(s) 798, 954, 1131
AsuC2I CCSGG 2 cut(s) 300, 846
AsuHPI GGTGA 3 cut(s) 254, 815, 1206
AsuII TTCGAA 1 cut(s) 1431
AvaI CYCGRG 1 cut(s) 754
AvaII GGWCC 1 cut(s) 798
BamHI GGATCC 1 cut(s) 295
BanII GRGCYC 2 cut(s) 1011, 1586
Bbv12I GWGCWC 4 cut(s) 288, 1011, 1561, 1586
BbvI GCAGC 3 cut(s) 1018, 1237, 1424
BccI CCATC 3 cut(s) 365, 488, 1484
BciT130I CCWGG 3 cut(s) 386, 402, 630
BciVI GTATCC 3 cut(s) 158, 907, 1696
BclI TGATCA 1 cut(s) 1342
BcnI CCSGG 2 cut(s) 300, 846
BcoDI GTCTC 1 cut(s) 733
BfaI CTAG 4 cut(s) 144, 476, 950, 1574
BfmI CTRYAG 2 cut(s) 1260, 1695
BfuI GTATCC 3 cut(s) 158, 907, 1696
BisI GCNGC 3 cut(s) 1032, 1226, 1413
BlsI GCNGC 3 cut(s) 1033, 1227, 1414
Bme1390I CCNGG 5 cut(s) 300, 386, 402, 630, 846
Bme18I GGWCC 1 cut(s) 798
BmeT110I CYCGRG 1 cut(s) 754
BmgT120I GGNCC 3 cut(s) 798, 954, 1131
BmiI GGNNCC 3 cut(s) 297, 328, 955
BmrFI CCNGG 5 cut(s) 300, 386, 402, 630, 846
BmsI GCATC 4 cut(s) 178, 580, 1043, 1321
BpmI CTGGAG 1 cut(s) 615
Bpu14I TTCGAA 1 cut(s) 1431
BpuEI CTTGAG 2 cut(s) 134, 176
BpuMI CCSGG 2 cut(s) 300, 846
BsaAI YACGTR 1 cut(s) 283
BsaI GGTCTC 1 cut(s) 733
BsaJI CCNNGG 3 cut(s) 385, 1618, 1648
BsaWI WCCGGW 3 cut(s) 800, 1065, 1469
BsaXI ACNNNNNCTCC 4 cut(s) 1485, 1515, 1697, 1727
Bsc4I CCNNNNNNNGG 6 cut(s) 157, 386, 494, 884, 1650, 1654
Bse118I RCCGGY 3 cut(s) 800, 933, 1065
Bse1I ACTGG 5 cut(s) 79, 736, 800, 1453, 1680
Bse3DI GCAATG 2 cut(s) 412, 1465
BseBI CCWGG 3 cut(s) 386, 402, 630
BseDI CCNNGG 3 cut(s) 385, 1618, 1648
BseGI GGATG 5 cut(s) 106, 193, 243, 1336, 1492
BseLI CCNNNNNNNGG 6 cut(s) 157, 386, 494, 884, 1650, 1654
BseMI GCAATG 2 cut(s) 412, 1465
BseNI ACTGG 5 cut(s) 79, 736, 800, 1453, 1680
BseRI GAGGAG 1 cut(s) 1527
BseXI GCAGC 3 cut(s) 1018, 1237, 1424
BseYI CCCAGC 1 cut(s) 1051
BshFI GGCC 8 cut(s) 400, 498, 600, 716, 956, 1132, 1382, 1397
BshTI ACCGGT 2 cut(s) 800, 1065
BsiHKAI GWGCWC 4 cut(s) 288, 1011, 1561, 1586
BsiHKCI CYCGRG 1 cut(s) 754
BsiSI CCGG 7 cut(s) 300, 801, 845, 934, 1000, 1066, 1470
BslFI GGGAC 1 cut(s) 1129
BslI CCNNNNNNNGG 6 cut(s) 157, 386, 494, 884, 1650, 1654
BsmAI GTCTC 1 cut(s) 733
BsmFI GGGAC 1 cut(s) 1129
BsmI GAATGC 1 cut(s) 375
BsnI GGCC 8 cut(s) 400, 498, 600, 716, 956, 1132, 1382, 1397
Bso31I GGTCTC 1 cut(s) 733
BsoBI CYCGRG 1 cut(s) 754
Bsp119I TTCGAA 1 cut(s) 1431
Bsp1286I GDGCHC 4 cut(s) 288, 1011, 1561, 1586
BspACI CCGC 2 cut(s) 572, 1337
BspANI GGCC 8 cut(s) 400, 498, 600, 716, 956, 1132, 1382, 1397
BspLI GGNNCC 3 cut(s) 297, 328, 955
BspMAI CTGCAG 1 cut(s) 1264
BspPI GGATC 7 cut(s) 206, 290, 303, 563, 604, 640, 1634
BspT104I TTCGAA 1 cut(s) 1431
BspTNI GGTCTC 1 cut(s) 733
BsrDI GCAATG 2 cut(s) 412, 1465
BsrFI RCCGGY 3 cut(s) 800, 933, 1065
BsrI ACTGG 5 cut(s) 79, 736, 800, 1453, 1680
BssAI RCCGGY 3 cut(s) 800, 933, 1065
BssECI CCNNGG 3 cut(s) 385, 1618, 1648
BssT1I CCWWGG 2 cut(s) 1618, 1648
Bst2UI CCWGG 3 cut(s) 386, 402, 630
Bst4CI ACNGT 5 cut(s) 605, 1172, 1185, 1645, 1677
Bst6I CTCTTC 1 cut(s) 1286
BstBAI YACGTR 1 cut(s) 283
BstBI TTCGAA 1 cut(s) 1431
BstC8I GCNNGC 1 cut(s) 935
BstDEI CTNAG 1 cut(s) 614
BstF5I GGATG 5 cut(s) 106, 193, 243, 1336, 1492
BstMAI GTCTC 1 cut(s) 733
BstMWI GCNNNNNNNGC 2 cut(s) 134, 1037
BstNI CCWGG 3 cut(s) 386, 402, 630
BstNSI RCATGY 2 cut(s) 691, 1361
BstSCI CCNGG 5 cut(s) 298, 384, 400, 628, 844
BstSFI CTRYAG 2 cut(s) 1260, 1695
BstV1I GCAGC 3 cut(s) 1018, 1237, 1424
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuI GTATCC 3 cut(s) 158, 907, 1696
BsuRI GGCC 8 cut(s) 400, 498, 600, 716, 956, 1132, 1382, 1397
BtsCI GGATG 5 cut(s) 106, 193, 243, 1336, 1492
BtsIMutI CAGTG 6 cut(s) 86, 793, 1032, 1446, 1687, 1736
Cac8I GCNNGC 1 cut(s) 935
CaiI CAGNNNCTG 3 cut(s) 1031, 1189, 1738
Cfr10I RCCGGY 3 cut(s) 800, 933, 1065
Cfr13I GGNCC 3 cut(s) 798, 954, 1131
Csp6I GTAC 2 cut(s) 784, 1467
CspAI ACCGGT 2 cut(s) 800, 1065
CviAII CATG 3 cut(s) 184, 688, 1358
CviQI GTAC 2 cut(s) 784, 1467
DdeI CTNAG 1 cut(s) 614
DraIII CACNNNGTG 1 cut(s) 440
Eam1104I CTCTTC 1 cut(s) 1286
EarI CTCTTC 1 cut(s) 1286
EciI GGCGGA 1 cut(s) 561
Ecl136II GAGCTC 2 cut(s) 1009, 1584
Eco130I CCWWGG 2 cut(s) 1618, 1648
Eco147I AGGCCT 2 cut(s) 716, 1397
Eco24I GRGCYC 2 cut(s) 1011, 1586
Eco31I GGTCTC 1 cut(s) 733
Eco47I GGWCC 1 cut(s) 798
Eco53kI GAGCTC 2 cut(s) 1009, 1584
Eco57I CTGAAG 2 cut(s) 1173, 1742
Eco88I CYCGRG 1 cut(s) 754
EcoICRI GAGCTC 2 cut(s) 1009, 1584
EcoO109I RGGNCCY 1 cut(s) 954
EcoRI GAATTC 2 cut(s) 553, 991
EcoRII CCWGG 3 cut(s) 384, 400, 628
EcoT14I CCWWGG 2 cut(s) 1618, 1648
EcoT38I GRGCYC 2 cut(s) 1011, 1586
ErhI CCWWGG 2 cut(s) 1618, 1648
FaeI CATG 3 cut(s) 187, 691, 1361
FaqI GGGAC 1 cut(s) 1129
FatI CATG 3 cut(s) 183, 687, 1357
FbaI TGATCA 1 cut(s) 1342
FblI GTMKAC 1 cut(s) 1305
Fnu4HI GCNGC 3 cut(s) 1032, 1226, 1413
FokI GGATG 5 cut(s) 113, 200, 250, 1343, 1499
FriOI GRGCYC 2 cut(s) 1011, 1586
Fsp4HI GCNGC 3 cut(s) 1032, 1226, 1413
FspBI CTAG 4 cut(s) 144, 476, 950, 1574
GluI GCNGC 3 cut(s) 1032, 1226, 1413
GsaI CCCAGC 1 cut(s) 1055
GsuI CTGGAG 1 cut(s) 615
HaeIII GGCC 8 cut(s) 400, 498, 600, 716, 956, 1132, 1382, 1397
HapII CCGG 7 cut(s) 300, 801, 845, 934, 1000, 1066, 1470
Hin1II CATG 3 cut(s) 187, 691, 1361
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 7 cut(s) 72, 864, 943, 1022, 1117, 1307, 1729
HpaII CCGG 7 cut(s) 300, 801, 845, 934, 1000, 1066, 1470
HphI GGTGA 3 cut(s) 254, 815, 1206
Hpy166II GTNNAC 7 cut(s) 168, 220, 412, 443, 786, 1306, 1363
Hpy188I TCNGA 7 cut(s) 109, 276, 552, 609, 985, 1191, 1734
Hpy8I GTNNAC 7 cut(s) 168, 220, 412, 443, 786, 1306, 1363
HpyAV CCTTC 5 cut(s) 269, 337, 1361, 1582, 1700
HpyCH4III ACNGT 5 cut(s) 605, 1172, 1185, 1645, 1677
HpyCH4IV ACGT 4 cut(s) 282, 367, 1060, 1325
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 1037
HpyF3I CTNAG 1 cut(s) 614
HpySE526I ACGT 4 cut(s) 282, 367, 1060, 1325
Hsp92II CATG 3 cut(s) 187, 691, 1361
KroI GCCGGC 1 cut(s) 933
KroNI GCCGGC 1 cut(s) 935
Ksp22I TGATCA 1 cut(s) 1342
LmnI GCTCC 4 cut(s) 887, 1006, 1232, 1717
Lsp1109I GCAGC 3 cut(s) 1018, 1237, 1424
LweI GCATC 4 cut(s) 178, 580, 1043, 1321
MaeI CTAG 4 cut(s) 144, 476, 950, 1574
MaeII ACGT 4 cut(s) 282, 367, 1060, 1325
MaeIII GTNAC 7 cut(s) 92, 655, 690, 1061, 1212, 1321, 1444
MboII GAAGA 5 cut(s) 253, 935, 1132, 1166, 1273
MfeI CAATTG 1 cut(s) 1122
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 4 cut(s) 288, 1011, 1561, 1586
MlyI GAGTC 3 cut(s) 858, 1111, 1301
MmeI TCCRAC 6 cut(s) 865, 920, 1308, 1604, 1635, 1695
MroNI GCCGGC 1 cut(s) 933
MseI TTAA 3 cut(s) 465, 1613, 1665
MslI CAYNNNNRTG 3 cut(s) 267, 1350, 1759
MspI CCGG 7 cut(s) 300, 801, 845, 934, 1000, 1066, 1470
MspR9I CCNGG 5 cut(s) 300, 386, 402, 630, 846
MunI CAATTG 1 cut(s) 1122
Mva1269I GAATGC 1 cut(s) 375
MvaI CCWGG 3 cut(s) 386, 402, 630
MwoI GCNNNNNNNGC 2 cut(s) 134, 1037
NaeI GCCGGC 1 cut(s) 935
NciI CCSGG 2 cut(s) 300, 846
NgoMIV GCCGGC 1 cut(s) 933
NlaIII CATG 3 cut(s) 187, 691, 1361
NlaIV GGNNCC 3 cut(s) 297, 328, 955
NmuCI GTSAC 3 cut(s) 655, 1212, 1444
NspI RCATGY 2 cut(s) 691, 1361
NspV TTCGAA 1 cut(s) 1431
PaeR7I CTCGAG 1 cut(s) 754
PceI AGGCCT 2 cut(s) 716, 1397
PctI GAATGC 1 cut(s) 375
PdiI GCCGGC 1 cut(s) 935
PfeI GAWTC 4 cut(s) 72, 943, 1022, 1729
PflMI CCANNNNNTGG 1 cut(s) 884
PfoI TCCNGGA 1 cut(s) 628
PinAI ACCGGT 2 cut(s) 800, 1065
PkrI GCNGC 3 cut(s) 1033, 1227, 1414
PleI GAGTC 3 cut(s) 858, 1111, 1301
PpsI GAGTC 3 cut(s) 858, 1111, 1301
Ppu21I YACGTR 1 cut(s) 283
PsiI TTATAA 1 cut(s) 362
Psp124BI GAGCTC 2 cut(s) 1011, 1586
Psp6I CCWGG 3 cut(s) 384, 400, 628
PspFI CCCAGC 1 cut(s) 1051
PspGI CCWGG 3 cut(s) 384, 400, 628
PspN4I GGNNCC 3 cut(s) 297, 328, 955
PspPI GGNCC 3 cut(s) 798, 954, 1131
PstI CTGCAG 1 cut(s) 1264
PstNI CAGNNNCTG 3 cut(s) 1031, 1189, 1738
PsuI RGATCY 1 cut(s) 295
RsaI GTAC 2 cut(s) 785, 1468
RsaNI GTAC 2 cut(s) 784, 1467
RseI CAYNNNNRTG 3 cut(s) 267, 1350, 1759
SacI GAGCTC 2 cut(s) 1011, 1586
SaqAI TTAA 3 cut(s) 465, 1613, 1665
SatI GCNGC 3 cut(s) 1032, 1226, 1413
Sau96I GGNCC 3 cut(s) 798, 954, 1131
SbfI CCTGCAGG 1 cut(s) 1264
SchI GAGTC 3 cut(s) 858, 1111, 1301
ScrFI CCNGG 5 cut(s) 300, 386, 402, 630, 846
SdaI CCTGCAGG 1 cut(s) 1264
SduI GDGCHC 4 cut(s) 288, 1011, 1561, 1586
SfaNI GCATC 4 cut(s) 178, 580, 1043, 1321
SfcI CTRYAG 2 cut(s) 1260, 1695
Sfr274I CTCGAG 1 cut(s) 754
SfuI TTCGAA 1 cut(s) 1431
SinI GGWCC 1 cut(s) 798
SlaI CTCGAG 1 cut(s) 754
SmiMI CAYNNNNRTG 3 cut(s) 267, 1350, 1759
SmlI CTYRAG 3 cut(s) 113, 155, 754
SmoI CTYRAG 3 cut(s) 113, 155, 754
Sse8387I CCTGCAGG 1 cut(s) 1264
SseBI AGGCCT 2 cut(s) 716, 1397
SsiI CCGC 2 cut(s) 572, 1337
SspMI CTAG 4 cut(s) 144, 476, 950, 1574
SstI GAGCTC 2 cut(s) 1011, 1586
StuI AGGCCT 2 cut(s) 716, 1397
StyD4I CCNGG 5 cut(s) 298, 384, 400, 628, 844
StyI CCWWGG 2 cut(s) 1618, 1648
TaaI ACNGT 5 cut(s) 605, 1172, 1185, 1645, 1677
TaiI ACGT 4 cut(s) 285, 370, 1063, 1328
TaqI TCGA 7 cut(s) 755, 761, 1245, 1275, 1431, 1586, 1593
TatI WGTACW 1 cut(s) 783
TfiI GAWTC 4 cut(s) 72, 943, 1022, 1729
Tru1I TTAA 3 cut(s) 465, 1613, 1665
Tru9I TTAA 3 cut(s) 465, 1613, 1665
TscAI CASTG 6 cut(s) 86, 800, 1032, 1453, 1687, 1743
TseFI GTSAC 3 cut(s) 655, 1212, 1444
TseI GCWGC 3 cut(s) 1031, 1225, 1412
Tsp45I GTSAC 3 cut(s) 655, 1212, 1444
TspDTI ATGAA 6 cut(s) 13, 254, 527, 531, 662, 936
TspRI CASTG 6 cut(s) 86, 800, 1032, 1453, 1687, 1743
Van91I CCANNNNNTGG 1 cut(s) 884
VpaK11BI GGWCC 1 cut(s) 798
XapI RAATTY 6 cut(s) 526, 553, 856, 991, 1237, 1604
XbaI TCTAGA 1 cut(s) 475
XceI RCATGY 2 cut(s) 691, 1361
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
XhoI CTCGAG 1 cut(s) 754
XmiI GTMKAC 1 cut(s) 1305
XspI CTAG 4 cut(s) 144, 476, 950, 1574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.