RchiOBHm_Chr5g0018611

Belongs to the glycosyl hydrolase 31 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
13124400 .. 13124894
495 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29879

Sequence Viewer

Length: 345 bp
ATGGGAGGAGAGGGAGGGAAGTGGAGTTTCGTGAGGTTTCGTTCTGCACTAGCACAAAATGGAAGTCTAGTTTTGAGCTCAAAGGTCGAAAATGGAGAATTTGCATTAAGCCAAGGTTGGATCATTGATAAAATTACCGTCCTTGGGTTGGACAAAGTTAATGCAACAGATGGGTATACATTGAGAATTACTAAAGGAGCAAAGTTGAAAGAAAACACAAATGTTAAGGCCAACTTTCACAGTTATGAGCGTTTTGTCAAGGTAGAGTCCAGTGTATCCCTTCCTATAGGAAAGGAGTTTGAGTTGGAGATGAAGCCGAATCAGATACTGGAGAAAACACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.

Protein Analysis

114

Amino Acids

12.64

Weight (kDa)

9.22

Isoelectric Point (pI)

8.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 176
AclWI GGATC 1 cut(s) 128
AcsI RAATTY 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 144, 148
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 1 cut(s) 78
AluI AGCT 1 cut(s) 78
Alw21I GWGCWC 1 cut(s) 80
AlwI GGATC 1 cut(s) 128
AlwNI CAGNNNCTG 1 cut(s) 328
AoxI GGCC 1 cut(s) 228
ApoI RAATTY 1 cut(s) 98
ArsI GACNNNNNNTTYG 2 cut(s) 49, 81
BanII GRGCYC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 80
BccI CCATC 1 cut(s) 164
BciVI GTATCC 1 cut(s) 286
BfaI CTAG 3 cut(s) 50, 68, 343
BfmI CTRYAG 1 cut(s) 285
BfuI GTATCC 1 cut(s) 286
BsaJI CCNNGG 2 cut(s) 112, 142
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 148
Bse1I ACTGG 2 cut(s) 270, 333
BseDI CCNNGG 2 cut(s) 112, 142
BseLI CCNNNNNNNGG 2 cut(s) 144, 148
BseNI ACTGG 2 cut(s) 270, 333
BseRI GAGGAG 1 cut(s) 21
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 80
BslI CCNNNNNNNGG 2 cut(s) 144, 148
BsnI GGCC 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 80
Bsp143I GATC 1 cut(s) 120
BspANI GGCC 1 cut(s) 230
BspPI GGATC 1 cut(s) 128
BsrI ACTGG 2 cut(s) 270, 333
BssECI CCNNGG 2 cut(s) 112, 142
BssMI GATC 1 cut(s) 120
BssNAI GTATAC 1 cut(s) 177
BssT1I CCWWGG 2 cut(s) 112, 142
Bst1107I GTATAC 1 cut(s) 177
Bst4CI ACNGT 2 cut(s) 139, 242
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BstSFI CTRYAG 1 cut(s) 285
BstZ17I GTATAC 1 cut(s) 177
BsuI GTATCC 1 cut(s) 286
BsuRI GGCC 1 cut(s) 230
BtsIMutI CAGTG 1 cut(s) 277
CaiI CAGNNNCTG 1 cut(s) 328
CviJI RGCY 4 cut(s) 78, 111, 230, 316
CviKI_1 RGCY 4 cut(s) 78, 111, 230, 316
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 112, 142
Eco24I GRGCYC 1 cut(s) 80
Eco53kI GAGCTC 1 cut(s) 78
EcoICRI GAGCTC 1 cut(s) 78
EcoT14I CCWWGG 2 cut(s) 112, 142
EcoT38I GRGCYC 1 cut(s) 80
ErhI CCWWGG 2 cut(s) 112, 142
FaiI YATR 3 cut(s) 177, 246, 287
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FblI GTMKAC 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 80
FspBI CTAG 3 cut(s) 50, 68, 343
HaeIII GGCC 1 cut(s) 230
HinfI GANTC 2 cut(s) 266, 319
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 1 cut(s) 324
Hpy188III TCNNGA 1 cut(s) 31
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 2 cut(s) 139, 242
HpyCH4V TGCA 3 cut(s) 47, 104, 164
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 2 cut(s) 283, 314
MaeI CTAG 3 cut(s) 50, 68, 343
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 80
MluCI AATT 3 cut(s) 98, 132, 186
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 3 cut(s) 98, 129, 285
MnlI CCTC 3 cut(s) 4, 8, 27
MseI TTAA 3 cut(s) 107, 159, 225
MslI CAYNNNNRTG 1 cut(s) 243
NdeII GATC 1 cut(s) 120
PfeI GAWTC 1 cut(s) 319
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
Psp124BI GAGCTC 1 cut(s) 80
PstNI CAGNNNCTG 1 cut(s) 328
RseI CAYNNNNRTG 1 cut(s) 243
SacI GAGCTC 1 cut(s) 80
SaqAI TTAA 3 cut(s) 107, 159, 225
Sau3AI GATC 1 cut(s) 120
SchI GAGTC 1 cut(s) 275
SduI GDGCHC 1 cut(s) 80
SetI ASST 5 cut(s) 38, 80, 87, 118, 264
SfcI CTRYAG 1 cut(s) 285
SgeI CNNG 8 cut(s) 43, 62, 80, 125, 155, 271, 282, 341
SmiMI CAYNNNNRTG 1 cut(s) 243
Sse9I AATT 3 cut(s) 98, 132, 186
SspMI CTAG 3 cut(s) 50, 68, 343
SstI GAGCTC 1 cut(s) 80
StyI CCWWGG 2 cut(s) 112, 142
TaaI ACNGT 2 cut(s) 139, 242
TaqI TCGA 1 cut(s) 87
TasI AATT 3 cut(s) 98, 132, 186
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 3 cut(s) 107, 159, 225
Tru9I TTAA 3 cut(s) 107, 159, 225
TscAI CASTG 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 326
TspRI CASTG 1 cut(s) 277
XapI RAATTY 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 176
XspI CTAG 3 cut(s) 50, 68, 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.