Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8186534.1

Orthogroup ID

OG0000882

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 689

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8186534.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

gttccaatggttggagctgatatatgtggtttctctggggatactaatgaagaactctgccggcgttggattcagctaggggccttttacccgttttcaagagatcactcagacaagaattcaatccggcaagagctctatctttgggaatcagttgcagcatcagcaaagaaggtgctggggctgcgataccggttgcttcccttgttctacacatcaatgtatcaagcacacaagaacgggaccccaattgcaaggcccgtattcttctcatttcctgaagataccaatacatacgacatcagttcacagtttctgattggtaaaggcgtgatggtatcacctgtgttgcagcaaggagcaaattcagttgaggcgtattttcctgctggaaactggaaacatattggccttgcaaggagaggccttgacaacacaagcagcccgaaacactacattcgaacttttggtggtcactggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

160

Amino Acids

18.08

Weight (kDa)

9.15

Isoelectric Point (pI)

55.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11720
fragaria_vesca	FvH4_3g11610 FvH4_3g11610 FvH4_3g11611
malus_domestica	MD05G1262000.v1.1 MD05G1262100.v1.1 MD05G1262200.v1.1 MD05G1262300.v1.1
prunus_persica	Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103600_v2.0.a1
pyrus_communis	pycom05g24590 pycom10g20100
rosa_chinensis	RchiOBHm_Chr5g0018571 RchiOBHm_Chr5g0018581 RchiOBHm_Chr5g0018611 RchiOBHm_Chr5g0018631 RchiOBHm_Chr5g0020511
rosa_laevigata	RLG00000032381 RLG00000032382 RLG00000032383 RLG00000032384 RLG00000032535
rosa_multiflora	Rmu_co8186534.1_g000001 Rmu_co8378957.1_g000001 Rmu_sc0002579.1_g000013 Rmu_sc0007192.1_g000006 Rmu_sc0008501.1_g000002 Rmu_sc0008501.1_g000005 Rmu_sc0009745.1_g000015 Rmu_sc0018336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057780 Rroxscaffold_1G00059120 Rroxscaffold_1G00059160 Rroxscaffold_1G00059170 Rroxscaffold_1G00059180 Rroxscaffold_7G00184290
rosa_rugosa	Rorug05G0045300 Rorug05G0045400 Rorug05G0045500 Rorug05G0060200
rosa_samantha	Rh5AG136400 Rh5AG136500 Rh5AG136600 Rh5AG136700 Rh5BG135300 Rh5BG135400 Rh5BG135500 Rh5BG150100 Rh5CG147100 Rh5CG147200 Rh5CG147300 Rh5CG147400 Rh5CG161600 Rh5DG136300 Rh5DG136400 Rh5DG136600 Rh5DG136700 Rh5DG149500
rosa_wichuraiana	Rw5G012080 Rw5G012090 Rw5G012100 Rw5G012110 Rw5G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	11
AcsI	RAATTY	2 cut(s)	118, 364
AcuI	CTGAAG	1 cut(s)	300
AfiI	CCNNNNNNNGG	1 cut(s)	11
AgeI	ACCGGT	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	99, 123
AluBI	AGCT	3 cut(s)	17, 76, 136
AluI	AGCT	3 cut(s)	17, 76, 136
Alw21I	GWGCWC	1 cut(s)	138
AlwNI	CAGNNNCTG	1 cut(s)	316
AoxI	GGCC	4 cut(s)	81, 257, 409, 424
ApeKI	GCWGC	4 cut(s)	158, 184, 352, 441
ApoI	RAATTY	2 cut(s)	118, 364
AsiGI	ACCGGT	1 cut(s)	192
AspS9I	GGNCC	3 cut(s)	81, 243, 258
AsuHPI	GGTGA	1 cut(s)	333
AsuII	TTCGAA	1 cut(s)	460
AvaII	GGWCC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	4 cut(s)	170, 171, 364, 453
BccI	CCATC	1 cut(s)	328
BciVI	GTATCC	1 cut(s)	34
BfaI	CTAG	1 cut(s)	77
BfuI	GTATCC	1 cut(s)	34
BisI	GCNGC	4 cut(s)	159, 185, 353, 442
BlsI	GCNGC	4 cut(s)	160, 186, 354, 443
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	3 cut(s)	81, 243, 258
BmiI	GGNNCC	3 cut(s)	82, 244, 245
BmsI	GCATC	1 cut(s)	170
Bpu14I	TTCGAA	1 cut(s)	460
BsaWI	WCCGGW	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse118I	RCCGGY	2 cut(s)	60, 192
Bse1I	ACTGG	2 cut(s)	401, 482
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	2 cut(s)	401, 482
BseXI	GCAGC	4 cut(s)	170, 171, 364, 453
BseYI	CCCAGC	1 cut(s)	178
BshFI	GGCC	4 cut(s)	83, 259, 411, 426
BshTI	ACCGGT	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	3 cut(s)	61, 127, 193
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	4 cut(s)	83, 259, 411, 426
Bsp119I	TTCGAA	1 cut(s)	460
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	103
BspANI	GGCC	4 cut(s)	83, 259, 411, 426
BspCNI	CTCAG	1 cut(s)	122
BspLI	GGNNCC	3 cut(s)	82, 244, 245
BspT104I	TTCGAA	1 cut(s)	460
BsrFI	RCCGGY	2 cut(s)	60, 192
BsrI	ACTGG	2 cut(s)	401, 482
BssAI	RCCGGY	2 cut(s)	60, 192
BssMI	GATC	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	312
BstBI	TTCGAA	1 cut(s)	460
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	109
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 184
BstV1I	GCAGC	4 cut(s)	170, 171, 364, 453
BsuI	GTATCC	1 cut(s)	34
BsuRI	GGCC	4 cut(s)	83, 259, 411, 426
BtsIMutI	CAGTG	1 cut(s)	475
Cac8I	GCNNGC	1 cut(s)	62
CaiI	CAGNNNCTG	1 cut(s)	316
Cfr10I	RCCGGY	2 cut(s)	60, 192
Cfr13I	GGNCC	3 cut(s)	81, 243, 258
CspAI	ACCGGT	1 cut(s)	192
CviJI	RGCY	9 cut(s)	17, 76, 83, 136, 184, 259, 411, 426, 444
CviKI_1	RGCY	9 cut(s)	17, 76, 83, 136, 184, 259, 411, 426, 444
DdeI	CTNAG	1 cut(s)	109
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Ecl136II	GAGCTC	1 cut(s)	136
Eco147I	AGGCCT	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	300
EcoICRI	GAGCTC	1 cut(s)	136
EcoO109I	RGGNCCY	2 cut(s)	81, 243
EcoRI	GAATTC	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	138
FaiI	YATR	4 cut(s)	23, 25, 295, 405
FaqI	GGGAC	1 cut(s)	256
Fnu4HI	GCNGC	4 cut(s)	159, 185, 353, 442
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	4 cut(s)	159, 185, 353, 442
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	4 cut(s)	159, 185, 353, 442
GsaI	CCCAGC	1 cut(s)	182
HaeIII	GGCC	4 cut(s)	83, 259, 411, 426
HapII	CCGG	3 cut(s)	61, 127, 193
HinfI	GANTC	2 cut(s)	70, 149
HpaII	CCGG	3 cut(s)	61, 127, 193
HphI	GGTGA	1 cut(s)	333
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	2 cut(s)	112, 318
Hpy188III	TCNNGA	2 cut(s)	99, 278
Hpy8I	GTNNAC	1 cut(s)	308
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4V	TGCA	4 cut(s)	158, 254, 352, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 184
HpyF3I	CTNAG	1 cut(s)	109
KflI	GGGWCCC	1 cut(s)	243
KroI	GCCGGC	1 cut(s)	60
KroNI	GCCGGC	1 cut(s)	62
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	2 cut(s)	14, 359
Lsp1109I	GCAGC	4 cut(s)	170, 171, 364, 453
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	3 cut(s)	62, 259, 293
MfeI	CAATTG	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	3 cut(s)	118, 249, 364
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	2 cut(s)	367, 416
MroNI	GCCGGC	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	218
MspI	CCGG	3 cut(s)	61, 127, 193
MunI	CAATTG	1 cut(s)	249
MwoI	GCNNNNNNNGC	2 cut(s)	164, 184
NaeI	GCCGGC	1 cut(s)	62
NdeII	GATC	1 cut(s)	103
NgoMIV	GCCGGC	1 cut(s)	60
NlaIV	GGNNCC	3 cut(s)	82, 244, 245
NmuCI	GTSAC	1 cut(s)	473
NspV	TTCGAA	1 cut(s)	460
PceI	AGGCCT	1 cut(s)	426
PdiI	GCCGGC	1 cut(s)	62
PfeI	GAWTC	2 cut(s)	70, 149
PflMI	CCANNNNNTGG	1 cut(s)	11
PinAI	ACCGGT	1 cut(s)	192
PkrI	GCNGC	4 cut(s)	160, 186, 354, 443
PpuMI	RGGWCCY	1 cut(s)	243
Psp124BI	GAGCTC	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	178
PspN4I	GGNNCC	3 cut(s)	82, 244, 245
PspPI	GGNCC	3 cut(s)	81, 243, 258
PspPPI	RGGWCCY	1 cut(s)	243
PstNI	CAGNNNCTG	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	138
SatI	GCNGC	4 cut(s)	159, 185, 353, 442
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	3 cut(s)	81, 243, 258
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	5 cut(s)	19, 78, 138, 177, 346
SfaNI	GCATC	1 cut(s)	170
SfuI	TTCGAA	1 cut(s)	460
SinI	GGWCC	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	218
Sse9I	AATT	3 cut(s)	118, 249, 364
SseBI	AGGCCT	1 cut(s)	426
SspMI	CTAG	1 cut(s)	77
SstI	GAGCTC	1 cut(s)	138
StuI	AGGCCT	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	312
TaqI	TCGA	1 cut(s)	460
TasI	AATT	3 cut(s)	118, 249, 364
TfiI	GAWTC	2 cut(s)	70, 149
TscAI	CASTG	1 cut(s)	482
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	4 cut(s)	158, 184, 352, 441
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	482
Van91I	CCANNNNNTGG	1 cut(s)	11
VpaK11BI	GGWCC	1 cut(s)	243
XapI	RAATTY	2 cut(s)	118, 364
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.