Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018336.1

Orthogroup ID

OG0000882

Physical Location & Seq

Genomic Coordinates Reverse (-)

85 .. 522

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018336.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

tctcctcctactccgaactccacacttgatgatccaccttacaaaatcaatgattccggagtccagcgtccgatcattaatgagactgttccggcatcagctctacactttggtaatataacagagtataacgtccataacctatatgggttcttggaatctaaagcaacacaccaggggttgatcaatgttactggtaagagaccatttatactttctagatcaacctttgtaagctctggtaagtacacagcacactggactggagacaatgcagcaagatggagtgacttggcatacacaattccaggcattttgaattttggactcttcggagttccaatggttggagctgatatatgtggtttctttggggatactaatgaagaactctgccggcgttggattcaggtaactgatcatgagcctttagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

145

Amino Acids

15.99

Weight (kDa)

5.63

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11720
fragaria_vesca	FvH4_3g11610 FvH4_3g11610 FvH4_3g11611
malus_domestica	MD05G1262000.v1.1 MD05G1262100.v1.1 MD05G1262200.v1.1 MD05G1262300.v1.1
prunus_persica	Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103500_v2.0.a1 Prupe.4G103600_v2.0.a1
pyrus_communis	pycom05g24590 pycom10g20100
rosa_chinensis	RchiOBHm_Chr5g0018571 RchiOBHm_Chr5g0018581 RchiOBHm_Chr5g0018611 RchiOBHm_Chr5g0018631 RchiOBHm_Chr5g0020511
rosa_laevigata	RLG00000032381 RLG00000032382 RLG00000032383 RLG00000032384 RLG00000032535
rosa_multiflora	Rmu_co8186534.1_g000001 Rmu_co8378957.1_g000001 Rmu_sc0002579.1_g000013 Rmu_sc0007192.1_g000006 Rmu_sc0008501.1_g000002 Rmu_sc0008501.1_g000005 Rmu_sc0009745.1_g000015 Rmu_sc0018336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057780 Rroxscaffold_1G00059120 Rroxscaffold_1G00059160 Rroxscaffold_1G00059170 Rroxscaffold_1G00059180 Rroxscaffold_7G00184290
rosa_rugosa	Rorug05G0045300 Rorug05G0045400 Rorug05G0045500 Rorug05G0060200
rosa_samantha	Rh5AG136400 Rh5AG136500 Rh5AG136600 Rh5AG136700 Rh5BG135300 Rh5BG135400 Rh5BG135500 Rh5BG150100 Rh5CG147100 Rh5CG147200 Rh5CG147300 Rh5CG147400 Rh5CG161600 Rh5DG136300 Rh5DG136400 Rh5DG136600 Rh5DG136700 Rh5DG149500
rosa_wichuraiana	Rw5G012080 Rw5G012090 Rw5G012100 Rw5G012110 Rw5G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	347
AccIII	TCCGGA	1 cut(s)	56
AclWI	GGATC	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	319
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	319
AjnI	CCWGG	2 cut(s)	174, 307
AluBI	AGCT	3 cut(s)	101, 237, 353
AluI	AGCT	3 cut(s)	101, 237, 353
Alw26I	GTCTC	3 cut(s)	77, 196, 261
AlwI	GGATC	1 cut(s)	26
Aor13HI	TCCGGA	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	319
AseI	ATTAAT	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	1 cut(s)	276
BciT130I	CCWGG	2 cut(s)	176, 309
BciVI	GTATCC	1 cut(s)	370
BclI	TGATCA	2 cut(s)	183, 418
BcoDI	GTCTC	3 cut(s)	77, 196, 261
BfaI	CTAG	1 cut(s)	219
BfuI	GTATCC	1 cut(s)	370
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	176, 309
BmrFI	CCNGG	2 cut(s)	176, 309
BmsI	GCATC	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	175
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse118I	RCCGGY	1 cut(s)	396
Bse1I	ACTGG	3 cut(s)	199, 263, 268
BseAI	TCCGGA	1 cut(s)	56
BseBI	CCWGG	2 cut(s)	176, 309
BseDI	CCNNGG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseNI	ACTGG	3 cut(s)	199, 263, 268
BseXI	GCAGC	1 cut(s)	287
BsiSI	CCGG	3 cut(s)	57, 92, 397
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	3 cut(s)	77, 196, 261
Bso31I	GGTCTC	1 cut(s)	196
Bsp13I	TCCGGA	1 cut(s)	56
Bsp143I	GATC	5 cut(s)	31, 72, 183, 221, 418
BspEI	TCCGGA	1 cut(s)	56
BspHI	TCATGA	1 cut(s)	421
BspPI	GGATC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	396
BsrI	ACTGG	3 cut(s)	199, 263, 268
BssAI	RCCGGY	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	5 cut(s)	31, 72, 183, 221, 418
Bst2UI	CCWGG	2 cut(s)	176, 309
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	398
BstKTI	GATC	5 cut(s)	34, 75, 186, 224, 421
BstMAI	GTCTC	3 cut(s)	77, 196, 261
BstMBI	GATC	5 cut(s)	31, 72, 183, 221, 418
BstNI	CCWGG	2 cut(s)	176, 309
BstSCI	CCNGG	2 cut(s)	174, 307
BstV1I	GCAGC	1 cut(s)	287
BsuI	GTATCC	1 cut(s)	370
BtsIMutI	CAGTG	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	398
CciI	TCATGA	1 cut(s)	421
Cfr10I	RCCGGY	1 cut(s)	396
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	1 cut(s)	422
CviJI	RGCY	4 cut(s)	101, 237, 353, 427
CviKI_1	RGCY	4 cut(s)	101, 237, 353, 427
CviQI	GTAC	1 cut(s)	247
DpnI	GATC	5 cut(s)	33, 74, 185, 223, 420
DpnII	GATC	5 cut(s)	31, 72, 183, 221, 418
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
Eco31I	GGTCTC	1 cut(s)	196
EcoRII	CCWGG	2 cut(s)	174, 307
FaeI	CATG	1 cut(s)	425
FatI	CATG	1 cut(s)	421
FbaI	TGATCA	2 cut(s)	183, 418
Fnu4HI	GCNGC	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	285
HapII	CCGG	3 cut(s)	57, 92, 397
HgaI	GACGC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	425
HinfI	GANTC	5 cut(s)	53, 60, 158, 327, 406
HpaII	CCGG	3 cut(s)	57, 92, 397
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	3 cut(s)	15, 72, 335
Hpy188III	TCNNGA	3 cut(s)	57, 219, 422
Hpy8I	GTNNAC	1 cut(s)	249
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	1 cut(s)	275
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	425
Kpn2I	TCCGGA	1 cut(s)	56
KroI	GCCGGC	1 cut(s)	396
KroNI	GCCGGC	1 cut(s)	398
Ksp22I	TGATCA	2 cut(s)	183, 418
Kzo9I	GATC	5 cut(s)	31, 72, 183, 221, 418
LmnI	GCTCC	1 cut(s)	350
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	1 cut(s)	104
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	3 cut(s)	190, 287, 412
MalI	GATC	5 cut(s)	33, 74, 185, 223, 420
MboI	GATC	5 cut(s)	31, 72, 183, 221, 418
MboII	GAAGA	2 cut(s)	322, 398
MluCI	AATT	2 cut(s)	303, 319
MlyI	GAGTC	2 cut(s)	69, 321
MmeI	TCCRAC	2 cut(s)	328, 383
MnlI	CCTC	1 cut(s)	15
MroI	TCCGGA	1 cut(s)	56
MroNI	GCCGGC	1 cut(s)	396
MseI	TTAA	1 cut(s)	78
MspI	CCGG	3 cut(s)	57, 92, 397
MspR9I	CCNGG	2 cut(s)	176, 309
MvaI	CCWGG	2 cut(s)	176, 309
NaeI	GCCGGC	1 cut(s)	398
NdeII	GATC	5 cut(s)	31, 72, 183, 221, 418
NgoMIV	GCCGGC	1 cut(s)	396
NlaIII	CATG	1 cut(s)	425
NmuCI	GTSAC	1 cut(s)	287
PagI	TCATGA	1 cut(s)	421
PdiI	GCCGGC	1 cut(s)	398
PfeI	GAWTC	3 cut(s)	53, 158, 406
PflMI	CCANNNNNTGG	1 cut(s)	347
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	2 cut(s)	68, 321
PpsI	GAGTC	2 cut(s)	68, 321
PshBI	ATTAAT	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	174, 307
PspGI	CCWGG	2 cut(s)	174, 307
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	5 cut(s)	31, 72, 183, 221, 418
SchI	GAGTC	2 cut(s)	69, 321
ScrFI	CCNGG	2 cut(s)	176, 309
SetI	ASST	8 cut(s)	40, 103, 135, 144, 230, 239, 355, 414
SfaNI	GCATC	1 cut(s)	104
Sse9I	AATT	2 cut(s)	303, 319
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	174, 307
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	1 cut(s)	135
TasI	AATT	2 cut(s)	303, 319
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	3 cut(s)	53, 158, 406
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	1 cut(s)	263
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	1 cut(s)	399
TspRI	CASTG	1 cut(s)	263
Van91I	CCANNNNNTGG	1 cut(s)	347
VspI	ATTAAT	1 cut(s)	78
XapI	RAATTY	1 cut(s)	319
XbaI	TCTAGA	1 cut(s)	218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.